 Claudio Atzori
|
b2192fdcdc
|
simplified reset_outputpath nodes across the workflows, applied common xml formatting
|
2020-05-08 12:33:31 +02:00 |
 Miriam Baglioni
|
4c94231cad
|
merge with master fork
|
2020-05-08 12:25:57 +02:00 |
|
Miriam Baglioni
|
9b4c0d4b3a
|
-
|
2020-05-08 11:51:45 +02:00 |
|
Miriam Baglioni
|
53952707b6
|
modified test because of new step of data preparation. It now expects to find ResultCountrySet serialization nstead of DatasourceCountry
|
2020-05-08 11:49:19 +02:00 |
|
Claudio Atzori
|
62ea19f1d3
|
introduced mapping for ExternalReferences, made urls defined within an instance unique
|
2020-05-08 09:43:26 +02:00 |
|
Claudio Atzori
|
8c67073a07
|
force speculative execution to false
|
2020-05-08 09:42:21 +02:00 |
|
Miriam Baglioni
|
d6b9de9f46
|
Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop
|
2020-05-07 18:22:59 +02:00 |
|
Miriam Baglioni
|
f95d288681
|
fixed swithch of parameters
|
2020-05-07 18:22:32 +02:00 |
|
Claudio Atzori
|
166aafd936
|
heavy cleanup
|
2020-05-07 18:22:26 +02:00 |
 Michele Artini
|
ac0da5a7ee
|
Partial implementation of broker events
|
2020-05-07 12:31:26 +02:00 |
|
Miriam Baglioni
|
fb405275f7
|
merged with master
|
2020-05-07 11:48:21 +02:00 |
|
Miriam Baglioni
|
e124278934
|
-
|
2020-05-07 11:47:11 +02:00 |
|
Claudio Atzori
|
5111671e62
|
celanup
|
2020-05-07 11:47:00 +02:00 |
|
Miriam Baglioni
|
9f8855991c
|
changed Encorders.bean to Encoders.kryo
|
2020-05-07 11:44:35 +02:00 |
|
Miriam Baglioni
|
207b899d6d
|
merged with upstream
|
2020-05-07 11:43:53 +02:00 |
|
Claudio Atzori
|
5b3f8a0e90
|
using Encoders.bean instead of kryo
|
2020-05-07 11:41:41 +02:00 |
|
Miriam Baglioni
|
182225becb
|
Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop
|
2020-05-07 11:38:17 +02:00 |
|
Miriam Baglioni
|
5efae3acb9
|
new workflow for job3
|
2020-05-07 11:38:10 +02:00 |
|
Claudio Atzori
|
73243793b2
|
Dataset based implementation for SparkCountryPropagationJob3
|
2020-05-07 11:15:24 +02:00 |
|
Claudio Atzori
|
128c3bf1c8
|
restored Author bean with simple getter/setter, author pid addition moved into dedicated implementation SparkOrcidToResultFromSemRelJob3
|
2020-05-07 11:14:56 +02:00 |
|
Miriam Baglioni
|
b2fec32c87
|
new workflow for job3
|
2020-05-07 10:01:57 +02:00 |
|
Miriam Baglioni
|
29bc8c44b1
|
changes in the construction of new country set
|
2020-05-07 10:01:34 +02:00 |
|
Miriam Baglioni
|
55e825acd4
|
chenged the test according to changes in SparkCOuntryPropagationJob2
|
2020-05-07 10:01:00 +02:00 |
|
Miriam Baglioni
|
16193cf0ba
|
new workflow and parameter for country propagation
|
2020-05-07 09:59:58 +02:00 |
|
Miriam Baglioni
|
5a476c7a13
|
chenged the xquery for the cfhb table
|
2020-05-07 09:58:17 +02:00 |
|
Miriam Baglioni
|
42ad51577a
|
new implementation with one more serialization step
|
2020-05-07 09:57:49 +02:00 |
|
Claudio Atzori
|
17860d3ab6
|
general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas)
|
2020-05-06 13:20:02 +02:00 |
|
Claudio Atzori
|
fdfecc9578
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-05-06 11:28:01 +02:00 |
|
Claudio Atzori
|
c79e2f5977
|
drop workingPath before starting the dedup workflow
|
2020-05-06 11:27:44 +02:00 |
|
Michele Artini
|
8f30a09d84
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-05-05 17:12:22 +02:00 |
|
Michele Artini
|
ccc609f909
|
new module for the production of broker events
|
2020-05-05 17:09:00 +02:00 |
|
Miriam Baglioni
|
dd2e698a72
|
added a sequentialization step on the spark job. Addedd new parameter
|
2020-05-05 17:03:43 +02:00 |
|
Claudio Atzori
|
0825321d0b
|
improved unit tests in dhp-aggregation
|
2020-05-05 12:39:04 +02:00 |
|
Miriam Baglioni
|
252b219dd5
|
chanced the name of some properties
|
2020-05-05 10:03:32 +02:00 |
|
Claudio Atzori
|
4a8487165c
|
using long param names in wf definition
|
2020-05-04 19:19:29 +02:00 |
|
Claudio Atzori
|
a2fc37df5f
|
adjusted parameters
|
2020-05-04 19:18:59 +02:00 |
|
Claudio Atzori
|
f1b7e14036
|
code formatting
|
2020-05-04 19:18:34 +02:00 |
|
Miriam Baglioni
|
78578c3ccf
|
fixed wrong trnasition name in workflow
|
2020-05-04 15:46:24 +02:00 |
|
Miriam Baglioni
|
cc7d9b6b19
|
merge upstream
|
2020-05-04 13:59:09 +02:00 |
|
Miriam Baglioni
|
3957c815b9
|
changed the name of some parameters
|
2020-05-04 13:58:52 +02:00 |
|
Miriam Baglioni
|
e218360f8a
|
changed code for the mode of DbClient and also removed the dependency to graph-mapper
|
2020-05-04 12:26:17 +02:00 |
|
Miriam Baglioni
|
31ea05297d
|
moved the DbClient to common and added needed dependency to pom
|
2020-05-04 12:22:28 +02:00 |
miconis
|
085cf173d7
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-05-04 12:08:20 +02:00 |
|
miconis
|
3df703f67d
|
mergerels added to propagate relations
|
2020-05-04 12:08:12 +02:00 |
|
Claudio Atzori
|
bac37b3973
|
fixed children expansion in XML records
|
2020-05-04 11:51:17 +02:00 |
|
Claudio Atzori
|
077ccd8743
|
stats wf properties cleanup
|
2020-05-04 11:41:46 +02:00 |
|
Miriam Baglioni
|
b7dd400e51
|
added check if author.pid exists or is null
|
2020-05-01 15:09:02 +02:00 |
|
Miriam Baglioni
|
dbf3ba051a
|
minor
|
2020-04-30 20:22:07 +02:00 |
|
Miriam Baglioni
|
43053a286d
|
workflow pom with added blacklist module
|
2020-04-30 18:30:21 +02:00 |
|
Miriam Baglioni
|
0631fe548a
|
pom.xml
|
2020-04-30 18:29:46 +02:00 |
|
Miriam Baglioni
|
38ecfd5785
|
the wf with all the three steps for blacklisting relations
|
2020-04-30 18:28:46 +02:00 |
|
Miriam Baglioni
|
95433e1087
|
parameters for the preparation phase and blacklist phase
|
2020-04-30 18:28:13 +02:00 |
|
Miriam Baglioni
|
1070790c19
|
minor
|
2020-04-30 18:26:58 +02:00 |
|
Miriam Baglioni
|
b9d56b3ced
|
applies the actual removal of the relations
|
2020-04-30 18:26:25 +02:00 |
|
Miriam Baglioni
|
d6d6ebeae5
|
preparation step: creates the subset of the merges relations
|
2020-04-30 18:25:33 +02:00 |
|
Miriam Baglioni
|
13f30664ea
|
minor
|
2020-04-30 15:23:49 +02:00 |
|
Miriam Baglioni
|
276b95b7b3
|
add create file instruction
|
2020-04-30 15:05:17 +02:00 |
|
Miriam Baglioni
|
65a5d67b8b
|
minor modifications
|
2020-04-30 14:45:27 +02:00 |
|
Miriam Baglioni
|
418595fec2
|
removed the saveGraph parameter
|
2020-04-30 14:45:00 +02:00 |
|
Miriam Baglioni
|
ce8b1d0bc3
|
new workflow definition to be inserted in the provision pipeline
|
2020-04-30 14:38:54 +02:00 |
|
Miriam Baglioni
|
4b0bd91012
|
-
|
2020-04-30 12:45:28 +02:00 |
|
Miriam Baglioni
|
2349bfd8b8
|
changed the job test to remove the writeUpdate option
|
2020-04-30 11:43:33 +02:00 |
 Sandro La Bruzzo
|
1e06bbaee8
|
fixed test
|
2020-04-30 11:38:58 +02:00 |
|
Miriam Baglioni
|
951517f9ec
|
new input parameters and workflow definition to be used in the provision pipeline
|
2020-04-30 11:32:50 +02:00 |
|
Miriam Baglioni
|
026f297e49
|
removed the writeUpdate oprion
|
2020-04-30 11:31:59 +02:00 |
|
Sandro La Bruzzo
|
b8e95295e2
|
merged from master
|
2020-04-30 11:27:59 +02:00 |
|
Miriam Baglioni
|
c89fe762b1
|
modified relation datasource organization
|
2020-04-30 11:17:03 +02:00 |
|
Miriam Baglioni
|
3abb76ff7a
|
merge with upstream
|
2020-04-30 11:15:54 +02:00 |
|
Michele Artini
|
eb9bd42970
|
fixed a problem with journals
|
2020-04-30 11:06:05 +02:00 |
|
Miriam Baglioni
|
638a3c465b
|
-
|
2020-04-30 11:05:17 +02:00 |
|
Michele Artini
|
a0a6109bbc
|
fixed a problem with journals
|
2020-04-30 11:03:46 +02:00 |
|
Miriam Baglioni
|
354f0162be
|
changes in the blacklist and workflow definition
|
2020-04-30 10:26:50 +02:00 |
|
Claudio Atzori
|
439c6255a2
|
cleanup
|
2020-04-29 19:09:07 +02:00 |
|
Claudio Atzori
|
77ac995770
|
cleaned up poms, added descriptions
|
2020-04-29 18:44:17 +02:00 |
|
Miriam Baglioni
|
3cffee74b9
|
merge with upstream
|
2020-04-29 18:25:29 +02:00 |
|
Miriam Baglioni
|
9ab46535e7
|
pom with the new blacklist module added
|
2020-04-29 18:17:15 +02:00 |
|
Miriam Baglioni
|
6a47e6191d
|
read from blacklist and write the result as relations on hdfs
|
2020-04-29 18:16:01 +02:00 |
|
Miriam Baglioni
|
869f576273
|
added hash map for relationship entityType id prefix, and relation inverse
|
2020-04-29 18:14:52 +02:00 |
|
Miriam Baglioni
|
b85ad7012a
|
reads the blacklist from the blacklist db and writes it as a set of relations on hdfs
|
2020-04-29 17:29:49 +02:00 |
|
Claudio Atzori
|
8fd81e863d
|
added default value for the external_stats_db_name
|
2020-04-29 15:36:24 +02:00 |
|
Claudio Atzori
|
c6f3ff4462
|
stats workflow content relocated into common package; added <global> property definitions in stats workflow.xml
|
2020-04-29 14:29:27 +02:00 |
|
Sandro La Bruzzo
|
4a89465740
|
reformatted code
|
2020-04-29 13:24:29 +02:00 |
|
Sandro La Bruzzo
|
a6b1a59d0a
|
merged with maaster
|
2020-04-29 13:20:57 +02:00 |
|
Sandro La Bruzzo
|
920c0f19c3
|
Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost
|
2020-04-29 13:13:16 +02:00 |
|
Sandro La Bruzzo
|
09f161f1f4
|
implemented unit test
|
2020-04-29 13:13:02 +02:00 |
|
miconis
|
e0d14fe4f8
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-04-29 13:02:53 +02:00 |
|
miconis
|
0352d3b0ba
|
entity dumps in dedup compressed
|
2020-04-29 13:02:34 +02:00 |
|
Michele Artini
|
c43b4c8962
|
formatting
|
2020-04-29 12:56:58 +02:00 |
|
Michele Artini
|
a5d7007005
|
Fix relations in migration
Fix pom.xml in dhp-stats-update
|
2020-04-29 12:05:41 +02:00 |
|
Miriam Baglioni
|
f7695e833c
|
resolved conflicts
|
2020-04-29 11:41:31 +02:00 |
|
Claudio Atzori
|
3616d0f88d
|
Merge pull request 'Adding the stats workflow to the dnet-hadoop hierarchy' (#6) from spyros/dnet-hadoop:master into master
Integrating stats update workflow.
|
2020-04-29 10:35:02 +02:00 |
|
Claudio Atzori
|
964972d29a
|
added data provision workflow definition WIP
|
2020-04-29 09:25:50 +02:00 |
 Enrico Ottonello
|
1edcd53581
|
added shell actions to download all 11 activities files from ORCID
|
2020-04-28 20:25:09 +02:00 |
|
miconis
|
62e467eb0c
|
assertion numbers updated to fit the new implementation of the pace-core
|
2020-04-28 11:46:23 +02:00 |
|
Claudio Atzori
|
6f5b899038
|
reformatted code according to the updated style descriptor
|
2020-04-28 11:23:29 +02:00 |
|
Claudio Atzori
|
ac25f2d8d1
|
integrated changes from master
|
2020-04-28 08:55:28 +02:00 |
|
Miriam Baglioni
|
2980e50edf
|
merge upstream
|
2020-04-27 15:06:48 +02:00 |
|
Claudio Atzori
|
a0bdbacdae
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:52:31 +02:00 |
|
Claudio Atzori
|
7a3f8085f7
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:45:40 +02:00 |
|
Michele Artini
|
1260d03eba
|
skip empty projects
|
2020-04-27 13:51:13 +02:00 |
|
Miriam Baglioni
|
df34a4ebcc
|
changed the configuration to add ignorecase option to each verb related to covid-19 community
|
2020-04-27 12:32:56 +02:00 |
|
Miriam Baglioni
|
7a59324ccf
|
changed the test to check for the new ignorecase option
|
2020-04-27 12:31:46 +02:00 |
|
Miriam Baglioni
|
986c97348d
|
added the ignorecase option to each selection verb
|
2020-04-27 12:31:05 +02:00 |
|
Miriam Baglioni
|
a303fc9f73
|
resources for testing propagation of result to comminuty from organization and from semrel
|
2020-04-27 11:14:16 +02:00 |
|
Miriam Baglioni
|
c093d764a3
|
-
|
2020-04-27 11:12:38 +02:00 |
|
Miriam Baglioni
|
c925e2be16
|
test for propagation of result to community from organization and result to community from semrel
|
2020-04-27 10:59:53 +02:00 |
|
Miriam Baglioni
|
ec7f166690
|
changed the bl because of changed of the examples for the re implementation of the propagation step
|
2020-04-27 10:58:41 +02:00 |
|
Miriam Baglioni
|
6135096ef1
|
refactoring
|
2020-04-27 10:57:50 +02:00 |
|
Miriam Baglioni
|
d30e710165
|
fixed duplicates action name in the workflow
|
2020-04-27 10:52:30 +02:00 |
|
Miriam Baglioni
|
f9ee343fc0
|
new parametrized workflow with preparation steps and new parameter input files
|
2020-04-27 10:48:31 +02:00 |
|
Miriam Baglioni
|
e2093644dc
|
changed in the workflow the directory where to store the preparedInfo and the graph genearated at this step
|
2020-04-27 10:46:44 +02:00 |
|
Miriam Baglioni
|
8a58bf2744
|
removed the writeUpdate option
|
2020-04-27 10:45:06 +02:00 |
|
Miriam Baglioni
|
5dccbe13db
|
merge with upstream
|
2020-04-27 10:43:59 +02:00 |
|
Miriam Baglioni
|
7b6505ec69
|
new resuorces for testing propagation of project to result after the re-implementation
|
2020-04-27 10:42:16 +02:00 |
|
Miriam Baglioni
|
1b0e0bd1b5
|
refactoring
|
2020-04-27 10:40:26 +02:00 |
|
Miriam Baglioni
|
e5a177f0a7
|
refactoring
|
2020-04-27 10:36:21 +02:00 |
|
Miriam Baglioni
|
e000754c92
|
refactoring
|
2020-04-27 10:34:03 +02:00 |
|
Miriam Baglioni
|
95a54d5460
|
removed the writeUpdate option. The update is available in the preparedInfo path
|
2020-04-27 10:30:32 +02:00 |
|
Miriam Baglioni
|
8802e4126b
|
re-implemented inverting the couple: from (projectId, relatedResultList) to (resultId, relatedProjectList)
|
2020-04-27 10:26:55 +02:00 |
|
Enrico Ottonello
|
a1861b9eaa
|
workflow works in parallel on 2 activity files
|
2020-04-24 18:33:37 +02:00 |
|
Enrico Ottonello
|
941e94af06
|
added workflow for generating authors with dois data sequence file
|
2020-04-24 15:50:40 +02:00 |
|
Claudio Atzori
|
268462623a
|
refined definition of equals and hash methods for Oaf model classes, now based on entity identifier, while relations consider sourceid, targetid and relationship semantic; Factored out function to group Oaf objects in grouping operations; Raw graph creation procedure merges entities and relationships providing the same identity
|
2020-04-24 14:42:01 +02:00 |
|
Claudio Atzori
|
a3e480d1c9
|
implmented DispatchEntitiesApplication using spark2 datasets
|
2020-04-24 14:36:53 +02:00 |
|
Claudio Atzori
|
48157e0fc4
|
GraphHiveImporterJob moved in dedicate package
|
2020-04-24 14:32:28 +02:00 |
|
Miriam Baglioni
|
adcbf0e29a
|
refactoring
|
2020-04-24 10:47:43 +02:00 |
|
Claudio Atzori
|
278fc9d276
|
code formatting
|
2020-04-23 18:51:38 +02:00 |
|
miconis
|
5414236644
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-04-23 18:17:23 +02:00 |
|
miconis
|
8d258c85ff
|
spark dedup test fixed, sample for dataset and orp added, test implemented
|
2020-04-23 18:16:20 +02:00 |
|
Michele Artini
|
072eae3803
|
fixed a problem with missing contexts
|
2020-04-23 16:42:49 +02:00 |
|
Michele Artini
|
b164d96874
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-04-23 16:19:16 +02:00 |
|
Michele Artini
|
d920ce501e
|
fixed a problem with missing instances
|
2020-04-23 16:18:40 +02:00 |
|
Miriam Baglioni
|
0e447add66
|
removed unuseful classes
|
2020-04-23 12:59:43 +02:00 |
|
Miriam Baglioni
|
edb00db86a
|
refactoring
|
2020-04-23 12:57:35 +02:00 |
|
Miriam Baglioni
|
44fab140de
|
-
|
2020-04-23 12:42:07 +02:00 |
|
Miriam Baglioni
|
769aa8178a
|
refactoring
|
2020-04-23 12:40:44 +02:00 |
|
Miriam Baglioni
|
d8dc31d4af
|
refactoring
|
2020-04-23 12:35:49 +02:00 |
|
Miriam Baglioni
|
8c5dac5cc3
|
removed unuseful classes
|
2020-04-23 12:30:58 +02:00 |
|
Miriam Baglioni
|
15656684b9
|
added proeprties for the preparation step and actual propagation. Added the new parametrized workflow
|
2020-04-23 12:13:34 +02:00 |
|
Miriam Baglioni
|
6f35f5ca42
|
added the steps of reset output dir and copy information not changed by the propagation step
|
2020-04-23 12:12:07 +02:00 |
|
Miriam Baglioni
|
19cd5b85c0
|
changed the classname to execute
|
2020-04-23 12:07:41 +02:00 |
|
Miriam Baglioni
|
fa2ff5c6f5
|
refactoring
|
2020-04-23 11:58:26 +02:00 |
|
Miriam Baglioni
|
540f70298b
|
added missing property
|
2020-04-23 11:51:48 +02:00 |
|
Miriam Baglioni
|
e431fe4f5b
|
added the implements Serializable to each class
|
2020-04-23 11:48:47 +02:00 |
|
Miriam Baglioni
|
24fa81d7e8
|
implementation parametrized for result type
|
2020-04-23 11:44:19 +02:00 |
|
Miriam Baglioni
|
ab2a24cc2b
|
changed the dependency to use reflections to find annotated classes
|
2020-04-23 11:08:47 +02:00 |
|
Miriam Baglioni
|
5153d88bd3
|
defiition of workflow and properties for bulktagging
|
2020-04-23 11:04:53 +02:00 |
|
Miriam Baglioni
|
3b2e4ab670
|
test for bulktag
|
2020-04-23 10:00:10 +02:00 |
|
Sandro La Bruzzo
|
fdc0523e4c
|
Merge remote-tracking branch 'origin/master' into doiboost
|
2020-04-23 09:34:13 +02:00 |
|
Sandro La Bruzzo
|
4ba386d996
|
improved crossref mapping
|
2020-04-23 09:33:48 +02:00 |
|
Claudio Atzori
|
8851050814
|
replaced hive_db_name with hiveDbName
|
2020-04-23 08:36:40 +02:00 |
|
Claudio Atzori
|
91f81107b1
|
applying code formatting
|
2020-04-23 07:52:32 +02:00 |
|
Claudio Atzori
|
1e7583c5a6
|
filtered invisible records in data provision workflow
|
2020-04-23 07:51:34 +02:00 |
|
Claudio Atzori
|
9ddafd46ca
|
fixed dedup record id prefix, set the correct dataInfo in the DedupRecordFactory
|
2020-04-23 07:50:18 +02:00 |
|
Claudio Atzori
|
ade4cb97af
|
fixed parameters passed to the postprocessing action in the workflow mapping the graph as hive DB
|
2020-04-22 18:24:06 +02:00 |
|
Sandro La Bruzzo
|
bb6c9785b4
|
Merge remote-tracking branch 'origin/master' into doiboost
|
2020-04-22 15:00:57 +02:00 |
|
Sandro La Bruzzo
|
157915988c
|
improved crossref mapping
|
2020-04-22 15:00:44 +02:00 |
|
Enrico Ottonello
|
5977f08e92
|
merged
|
2020-04-22 14:50:50 +02:00 |
|
Enrico Ottonello
|
7d759947ae
|
used vtd for parsing orcid xml record, set 4g heapspace
|
2020-04-22 14:41:19 +02:00 |
|
Claudio Atzori
|
e81960335c
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-04-22 10:46:37 +02:00 |
|
Michele Artini
|
9e4d58f505
|
ResultType
|
2020-04-22 10:07:26 +02:00 |
|
Claudio Atzori
|
c891661822
|
small adjustments in the graph2hive workflow
|
2020-04-21 18:52:23 +02:00 |
|
Miriam Baglioni
|
259525cb93
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-21 18:33:46 +02:00 |
|
Miriam Baglioni
|
30e53261d0
|
minor
|
2020-04-21 18:00:53 +02:00 |
|
Claudio Atzori
|
0b55795d4d
|
small adjustments in the provisioning workflow
|
2020-04-21 16:15:04 +02:00 |
|
Claudio Atzori
|
88fbb3a353
|
added sparkSqlWarehouseDir to the default extra spark options passed to each workflow
|
2020-04-21 16:13:43 +02:00 |
|
Claudio Atzori
|
cd320efa96
|
added extra spark options to graph to hive workflow
|
2020-04-21 16:12:20 +02:00 |
|
Miriam Baglioni
|
90c768dde6
|
added shaded libs module
|
2020-04-21 16:03:51 +02:00 |
|
Claudio Atzori
|
91e72a6944
|
Dataset based implementation for SparkCreateDedupRecord phase, fixed datasource entity dump supplementing dedup unit tests
|
2020-04-21 12:06:08 +02:00 |
|
miconis
|
5c9ef08a8e
|
spark dedup test fixed
|
2020-04-21 10:19:04 +02:00 |
|
Sandro La Bruzzo
|
3624947a7f
|
Merge remote-tracking branch 'origin/master' into doiboost
|
2020-04-21 08:34:24 +02:00 |
|
Claudio Atzori
|
d772d967aa
|
restored changes from master branch
|
2020-04-20 18:53:06 +02:00 |
|
Claudio Atzori
|
eb8a020859
|
fixed behaviour of DedupRecordFactory
|
2020-04-20 18:44:06 +02:00 |
|
Sandro La Bruzzo
|
039f9b7871
|
Merge remote-tracking branch 'origin/master' into doiboost
|
2020-04-20 18:10:29 +02:00 |
|
Sandro La Bruzzo
|
e4b105cece
|
improved crossref mapping
|
2020-04-20 18:10:07 +02:00 |
|
Claudio Atzori
|
ede1af3d85
|
Merge branch 'master' into deduptesting
|
2020-04-20 16:52:14 +02:00 |
|
miconis
|
1102e32462
|
SparkDedupTest updated and organization dump fixed
|
2020-04-20 16:49:01 +02:00 |
|
Claudio Atzori
|
667d23c58b
|
finalising Actionset migration workflow
|
2020-04-20 16:45:21 +02:00 |
|
miconis
|
4da13e4570
|
Revert "Merge branch 'master' into deduptesting"
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
|
2020-04-20 16:04:49 +02:00 |
|
Claudio Atzori
|
9147af7fed
|
actionsets migration workflow moved in dhp-workflows/dhp-actionmanager
|
2020-04-20 15:24:33 +02:00 |
|
miconis
|
772f75d167
|
Merge branch 'master' into deduptesting
|
2020-04-20 14:50:12 +02:00 |
|
Sandro La Bruzzo
|
5d46ec7d5f
|
fixed name of wrong package
|
2020-04-20 14:49:32 +02:00 |
|
Sandro La Bruzzo
|
82cc3b707d
|
fixed name of wrong package
|
2020-04-20 14:47:06 +02:00 |
|
Sandro La Bruzzo
|
b2c872cb4d
|
merged master
|
2020-04-20 14:04:40 +02:00 |
|
Sandro La Bruzzo
|
7029942e06
|
Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost
|
2020-04-20 13:26:41 +02:00 |
|
Sandro La Bruzzo
|
0e45f4d450
|
continue mapping from crossref to OAF
|
2020-04-20 13:26:29 +02:00 |
|
Enrico Ottonello
|
a466648b4b
|
renamed output file
|
2020-04-20 12:32:03 +02:00 |
|
Claudio Atzori
|
d714bfb4d4
|
collectedfrom field moved in common parent class Oaf.java
|
2020-04-20 12:25:19 +02:00 |
|
Enrico Ottonello
|
4ae55e3891
|
added workflow parameters
|
2020-04-20 12:00:04 +02:00 |
|
Michele Artini
|
8ff7facfa3
|
fixed collectedFrom ID
|
2020-04-20 11:09:27 +02:00 |
|
Sandro La Bruzzo
|
eef60bb9f4
|
created structure of oozie wf for ORCID
|
2020-04-20 10:24:57 +02:00 |
|
Sandro La Bruzzo
|
4d0d9de07e
|
reorganized package and fixed test
|
2020-04-20 10:02:42 +02:00 |
|
Sandro La Bruzzo
|
618bc1fc72
|
first implementation of crossrefMapping
|
2020-04-20 09:53:34 +02:00 |
|
Michele Artini
|
25307965d2
|
add a default datainfo if missing
|
2020-04-20 09:43:27 +02:00 |
|
Michele Artini
|
d2058fdc47
|
tests
|
2020-04-20 09:31:14 +02:00 |
|
Enrico Ottonello
|
1d44a359ea
|
renamed package folder
|
2020-04-20 09:25:40 +02:00 |
|
Michele Artini
|
478a958f09
|
tests
|
2020-04-20 09:15:27 +02:00 |
|
Miriam Baglioni
|
e1848b7603
|
minor
|
2020-04-18 14:16:42 +02:00 |
|
Miriam Baglioni
|
0ff9b1ef05
|
added needed parameter
|
2020-04-18 14:16:29 +02:00 |
|
Miriam Baglioni
|
e2dfe8b656
|
removed not used action
|
2020-04-18 14:16:07 +02:00 |
|
Miriam Baglioni
|
437ebbad76
|
refactorign
|
2020-04-18 14:15:09 +02:00 |
|
Miriam Baglioni
|
9a8876ac86
|
added needed parameter
|
2020-04-18 14:14:08 +02:00 |
|
Miriam Baglioni
|
9854852878
|
refactoring
|
2020-04-18 14:13:16 +02:00 |
|
Miriam Baglioni
|
454b8a6a29
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-18 14:09:44 +02:00 |
|
Miriam Baglioni
|
890ec28f0f
|
input parameters for preparation step1
|
2020-04-18 14:09:37 +02:00 |
|
Miriam Baglioni
|
fbf5c27c27
|
Added preparation classes before actual propagation
|
2020-04-18 14:09:03 +02:00 |
|
Claudio Atzori
|
5f45f2c77f
|
Merge branch 'master' into deduptesting
|
2020-04-18 12:46:40 +02:00 |
|
Claudio Atzori
|
ad7a131b18
|
introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project
|
2020-04-18 12:42:58 +02:00 |
|
Claudio Atzori
|
a2938dd059
|
cleanup
|
2020-04-18 12:24:22 +02:00 |
|
Claudio Atzori
|
9374ff03ea
|
Merge branch 'master' into deduptesting
|
2020-04-18 12:06:58 +02:00 |
|
Claudio Atzori
|
71813795f6
|
various refactorings on the dnet-dedup-openaire workflow
|
2020-04-18 12:06:23 +02:00 |
|
Enrico Ottonello
|
7011d4203e
|
parser of orcid summaries from tar gz file on hdfs, that creates a sequence file with authors informations (oid, name, surname, credit name)
|
2020-04-17 18:52:39 +02:00 |
|
miconis
|
6450bb0daa
|
test for softwares dedup added. definition of orp, dataset and sw dedup configurations
|
2020-04-17 17:31:59 +02:00 |
|
Miriam Baglioni
|
72c63a326e
|
removed unuseful class
|
2020-04-17 17:14:51 +02:00 |
|
Miriam Baglioni
|
00c2ca3ee5
|
-
|
2020-04-17 17:14:25 +02:00 |
|
Miriam Baglioni
|
5cd092114f
|
use mergeFrom method to add the new community contexts
|
2020-04-17 17:13:18 +02:00 |
|
Miriam Baglioni
|
264c82f21e
|
minor
|
2020-04-17 16:54:46 +02:00 |
|
Miriam Baglioni
|
8c079c7a49
|
unit test for orcid to result propagation from semrel
|
2020-04-17 16:53:03 +02:00 |
|
Miriam Baglioni
|
eacd140a98
|
added missing parameter(s)
|
2020-04-17 16:52:30 +02:00 |
|
Miriam Baglioni
|
390e250faf
|
use the addPid method of the Author class to add a new pid
|
2020-04-17 16:52:02 +02:00 |
|
Miriam Baglioni
|
b46b080ddc
|
use mergeFrom method call to add the country(ies) instead of modify the result directly.
|
2020-04-17 16:50:54 +02:00 |
|
Miriam Baglioni
|
c4987dd12a
|
minor
|
2020-04-17 16:49:08 +02:00 |
|
Claudio Atzori
|
038ac7afd7
|
relation consistency workflow separated from dedup scan and creation of CCs
|
2020-04-17 13:12:44 +02:00 |
|
Claudio Atzori
|
c92bfeeaee
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-04-17 13:07:52 +02:00 |
|
Miriam Baglioni
|
adc11c97a7
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-17 12:34:31 +02:00 |
|
Sandro La Bruzzo
|
a329ea5575
|
merged with master branch
|
2020-04-17 12:23:54 +02:00 |
|
Sandro La Bruzzo
|
01ea7721f3
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-04-17 12:12:25 +02:00 |
|
Sandro La Bruzzo
|
5e2fa996aa
|
fixed problem with conversion of long into string
|
2020-04-17 12:11:51 +02:00 |
|
miconis
|
418cf94642
|
implementation of the deletedbyinference test in propagating relations
|
2020-04-17 10:40:21 +02:00 |
|
Miriam Baglioni
|
5d772e5263
|
new implementation of propagation of community to result from organization that exploits the prepared info
|
2020-04-16 18:45:22 +02:00 |
|
Miriam Baglioni
|
fff1e5ec39
|
classes to (de)serialize the data provided in the preparation step
|
2020-04-16 18:44:43 +02:00 |
|
Miriam Baglioni
|
3fd9d6b02f
|
preparation phase for the propagation of community to result from organization
|
2020-04-16 18:43:55 +02:00 |
|
Miriam Baglioni
|
a9120164aa
|
added hive parameter and a step of reset of the working dir in the workflow
|
2020-04-16 18:42:04 +02:00 |
|
Miriam Baglioni
|
6afbd542ca
|
changed the save mode to avoid NegativeArraySize... error. Needed to modify also the preparationstep2
|
2020-04-16 18:40:14 +02:00 |
|
Miriam Baglioni
|
d60fd36046
|
changed the save method
|
2020-04-16 16:14:15 +02:00 |
|
Miriam Baglioni
|
951b13ac46
|
input parameters and workflow for new implementation of propagation of orcid to result from semrel and preparation phases
|
2020-04-16 16:13:10 +02:00 |
|
Miriam Baglioni
|
4d89f3dfed
|
removed unuseful classes
|
2020-04-16 16:11:44 +02:00 |
|
Miriam Baglioni
|
5e72a51f11
|
-
|
2020-04-16 16:11:20 +02:00 |
|
Miriam Baglioni
|
c33a593381
|
renamed
|
2020-04-16 16:09:47 +02:00 |
|
Miriam Baglioni
|
0e5399bf74
|
seconf phase of data preparation. Groups all the possible updates by id
|
2020-04-16 16:08:51 +02:00 |
|
Miriam Baglioni
|
548ba915ac
|
first phase of data preparation. For each result type (parallel) it produces the possible updates
|
2020-04-16 15:58:42 +02:00 |
|
Miriam Baglioni
|
243013cea3
|
to (de)serialize the association from the resultId and the list of autoritative authors with orcid to possibly propagate
|
2020-04-16 15:57:29 +02:00 |
|
Miriam Baglioni
|
ac3ad25b36
|
to (de)serialize needed information of the author to determine if the orcid can be passed (name, surname, fullname (?), orcid)
|
2020-04-16 15:56:33 +02:00 |
|
Miriam Baglioni
|
d6cd700a32
|
new implementation that exploits prepared information (the list of possible updates: resultId - possible list of orcid to be added
|
2020-04-16 15:55:25 +02:00 |
|
Miriam Baglioni
|
f077f22f73
|
minor
|
2020-04-16 15:54:16 +02:00 |
|
Miriam Baglioni
|
fd5d792e35
|
refactoring
|
2020-04-16 15:53:34 +02:00 |
|
Claudio Atzori
|
cb0952428e
|
Merge branch 'master' into deduptesting
|
2020-04-16 14:42:25 +02:00 |
|
Claudio Atzori
|
cc21bbfb1a
|
Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting
|
2020-04-16 14:41:37 +02:00 |
|
Claudio Atzori
|
ec5dfc068d
|
added spark.sql.shuffle.partitions=3840 to dedup scan wf
|
2020-04-16 14:41:28 +02:00 |
|
Claudio Atzori
|
09f356b047
|
Merge pull request 'Closes #7: subdirs inside graph table dirs' (#8) from przemyslaw.jacewicz/dnet-hadoop:przemyslawjacewicz_7_distcp_configuration_fix into master
Run the code from this PR in isolation and it worked fine. Thanks!
|
2020-04-16 14:38:46 +02:00 |
|
Claudio Atzori
|
3437383112
|
Merge branch 'master' into deduptesting
|
2020-04-16 12:46:14 +02:00 |
|
miconis
|
0eccbc318b
|
Deduper class (utilities for dedup) cleaned. Useless methods removed
|
2020-04-16 12:36:37 +02:00 |
|
Claudio Atzori
|
76d23895e6
|
Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting
|
2020-04-16 12:18:32 +02:00 |
|
miconis
|
6a089ec287
|
minor changes
|
2020-04-16 12:15:38 +02:00 |
|
Claudio Atzori
|
376efd67de
|
removed prepare statement in spark action
|
2020-04-16 12:14:16 +02:00 |
|
miconis
|
9b36458b6a
|
Merge branch 'deduptesting' of code-repo.d4science.org:D-Net/dnet-hadoop into deduptesting
|
2020-04-16 12:13:58 +02:00 |
|
miconis
|
cd4d9a148f
|
creating temporary directories in dedup test
|
2020-04-16 12:13:26 +02:00 |
|
Claudio Atzori
|
b39ff36c16
|
improving the wf definitions
|
2020-04-16 12:11:37 +02:00 |
|
Claudio Atzori
|
011b342bc9
|
trying to avoid OOM in SparkPropagateRelation
|
2020-04-16 11:13:51 +02:00 |
|
Miriam Baglioni
|
08227cfcbd
|
resources needed for running the test on propagation of result to organization from institutional repositories
|
2020-04-16 11:06:10 +02:00 |
|
Miriam Baglioni
|
a97e915c24
|
test unit for propagation of result to organization from institutional repository
|
2020-04-16 11:05:21 +02:00 |
|
Miriam Baglioni
|
b078710924
|
modification to the test due to the removal of unused parameters
|
2020-04-16 11:04:39 +02:00 |
|
Miriam Baglioni
|
a5e5c81a2c
|
input parameters and workflow definition for propagation of result to organization from institutional repositories
|
2020-04-16 11:03:41 +02:00 |
|
Miriam Baglioni
|
5e1bd67680
|
removed unuseful parameter
|
2020-04-16 11:02:01 +02:00 |
|
Miriam Baglioni
|
eaf19ce01b
|
removed unuseful class
|
2020-04-16 10:59:33 +02:00 |
|
Miriam Baglioni
|
7bd49abbef
|
commit to delete
|
2020-04-16 10:59:09 +02:00 |
|
Miriam Baglioni
|
53f418098b
|
added the isTest checkpoint
|
2020-04-16 10:53:48 +02:00 |
|
Miriam Baglioni
|
c28333d43f
|
minor
|
2020-04-16 10:52:50 +02:00 |
|
Miriam Baglioni
|
a8100baed6
|
changed the way to save the results to aviod NegativeArray... error
|
2020-04-16 10:50:09 +02:00 |
|
Miriam Baglioni
|
79b978ec57
|
refactoring
|
2020-04-16 10:48:41 +02:00 |
|
Claudio Atzori
|
069ef5eaed
|
trying to avoid OOM in SparkPropagateRelation
|
2020-04-15 21:23:21 +02:00 |
|
Claudio Atzori
|
8eedfefc98
|
try to introduce intermediate serialization on hdfs to avoid OOM
|
2020-04-15 18:35:35 +02:00 |
 Przemysław Jacewicz
|
da019495d7
|
[dhp-actionmanager] target dir removal added for distcp actions
|
2020-04-15 17:56:57 +02:00 |
|
miconis
|
5689d49689
|
minor changes
|
2020-04-15 16:34:06 +02:00 |
|
Claudio Atzori
|
c439d0c6bb
|
PromoteActionPayloadForGraphTableJob reads directly the content pointed by the input path, adjusted promote action tests (ISLookup mock)
|
2020-04-15 16:18:33 +02:00 |
|
Claudio Atzori
|
ff30f99c65
|
using newline delimited json files for the raw graph materialization. Introduced contentPath parameter
|
2020-04-15 16:16:20 +02:00 |
|
Sandro La Bruzzo
|
3d3ac76dda
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-04-15 15:24:01 +02:00 |
|
Sandro La Bruzzo
|
74a7fac774
|
fixed problem with timestamp
|
2020-04-15 15:23:54 +02:00 |
|
Miriam Baglioni
|
3577219127
|
removed unuseful classes
|
2020-04-15 12:45:49 +02:00 |
|
Miriam Baglioni
|
964b22d418
|
modified the writing of the new relations. before: read old rels, add the new ones to them, write all the relations in new location. Now: first step of the wf copies the old relation i new location. If new relations are found, they are saved in the new location in append mode.
|
2020-04-15 12:32:01 +02:00 |
|
Miriam Baglioni
|
43f0590d4b
|
change in the testing because the business logic is changed.
|
2020-04-15 12:29:50 +02:00 |
|
Miriam Baglioni
|
473d17767c
|
new business logic for the actual propagation. It exploits previously computed information
|
2020-04-15 12:25:44 +02:00 |
|
Miriam Baglioni
|
6a377a7582
|
class to compute some information needed for the actual propagation
|
2020-04-15 12:25:11 +02:00 |
|
Miriam Baglioni
|
5a3487280d
|
classes to serialize/deserialize the prepared data
|
2020-04-15 12:24:36 +02:00 |
|
Miriam Baglioni
|
62b09be43c
|
added correct descritption for parameter isSparkSessionManaged
|
2020-04-15 12:23:06 +02:00 |
|
Miriam Baglioni
|
1859ce8902
|
minor refactoring
|
2020-04-15 12:21:31 +02:00 |
|
Miriam Baglioni
|
27f1d3ee8f
|
minor refactoring
|
2020-04-15 12:21:05 +02:00 |
 Alessia Bardi
|
550a9f82ed
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-04-14 17:53:01 +02:00 |
|
Alessia Bardi
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a68fae9bcb
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now supporting openaire 4.0 compliance
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2020-04-14 17:52:48 +02:00 |
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Sandro La Bruzzo
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c36239e693
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fixed incremental indexing
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2020-04-14 17:47:36 +02:00 |
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Miriam Baglioni
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3f4b579e7f
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new workflow. It is composed of four steps. The first removes the directory where to store the results. The second copies the relation to the new locatio, the third id the preparation phase and then the actual propagation
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2020-04-14 16:49:24 +02:00 |
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Miriam Baglioni
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ca2b40952e
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minor changes
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2020-04-14 16:48:02 +02:00 |
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Miriam Baglioni
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61d39e659e
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parameters for the project2result propagation phase
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2020-04-14 16:47:39 +02:00 |
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Miriam Baglioni
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92f19fa0a0
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parameters for the project2result preparation phase
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2020-04-14 16:46:57 +02:00 |
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Miriam Baglioni
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cadab9b81d
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new implementation for result to project propagation. Use the prepared info in propagation
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2020-04-14 16:46:07 +02:00 |
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Miriam Baglioni
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ceb1f299bf
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minor changes
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2020-04-14 16:45:12 +02:00 |
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Claudio Atzori
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82e8341f50
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reorganizing parameter names in the provision workflow
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2020-04-14 15:54:41 +02:00 |
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Miriam Baglioni
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e0038bde5b
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Support class to serialize/deserialize the association project, set of linked results
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2020-04-14 15:32:12 +02:00 |
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Miriam Baglioni
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c0bebb7c35
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code to compute the prepared information used in the actual propagation step. This step will produce who files: one with potential updates (association between projects and a list of results), the other already linked entities (association between projects and the list of results already linked to them)
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2020-04-14 15:31:26 +02:00 |
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Miriam Baglioni
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f47ee5b78e
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directory where to store the prepared infor before actual propagation will take place
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2020-04-14 15:29:21 +02:00 |
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Miriam Baglioni
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36cc9516d8
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the starting relation set for testing
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2020-04-14 15:28:34 +02:00 |