 Claudio Atzori
|
e355961997
|
dataset based provision WIP
|
2020-04-06 17:34:25 +02:00 |
miconis
|
56fbe689f0
|
implementation of the tests for each spark action
|
2020-04-06 16:30:31 +02:00 |
|
Claudio Atzori
|
ca345aaad3
|
dataset based provision WIP
|
2020-04-06 15:33:31 +02:00 |
|
Claudio Atzori
|
c8f4b95464
|
dataset based provision WIP
|
2020-04-06 08:59:58 +02:00 |
|
Claudio Atzori
|
eb2f5f3198
|
dataset based provision WIP
|
2020-04-04 17:41:31 +02:00 |
|
Claudio Atzori
|
3d1b637cab
|
dataset based provision WIP
|
2020-04-04 14:03:43 +02:00 |
|
miconis
|
53fd624c34
|
implemented test for sparkcreatesimrels
|
2020-04-03 18:32:25 +02:00 |
|
Claudio Atzori
|
24b2c9012e
|
dataset based provision WIP
|
2020-04-02 18:44:09 +02:00 |
|
miconis
|
a61763d149
|
structure for sparksimrel changed to be compliant with mockito testing
|
2020-04-02 18:37:53 +02:00 |
|
Claudio Atzori
|
daa26acc9d
|
dataset based provision WIP, fixed spark2EventLogDir
|
2020-04-02 16:15:50 +02:00 |
 Przemysław Jacewicz
|
7b2a7e2417
|
[dhp-actionmanager] missing descriptions added and minor naming and formatting fixes
|
2020-04-02 11:48:40 +02:00 |
 Spyros Zoupanos
|
1ab97bbe00
|
Adding the full stats workflow to the dnet-hadoop hierarchy
|
2020-04-01 22:22:05 +03:00 |
|
Claudio Atzori
|
9c7092416a
|
dataset based provision WIP
|
2020-04-01 19:07:30 +02:00 |
|
miconis
|
bfa5bc74df
|
minor changes
|
2020-04-01 19:05:48 +02:00 |
|
Przemysław Jacewicz
|
80cf43b9c8
|
[dhp-actionmanager] promoting workflow added
|
2020-04-01 18:51:25 +02:00 |
|
Przemysław Jacewicz
|
5b459bcc47
|
[dhp-actionmanager] promoting spark job added
|
2020-04-01 18:49:08 +02:00 |
|
miconis
|
9802bcb9fe
|
dedup testing
|
2020-04-01 18:48:31 +02:00 |
|
Przemysław Jacewicz
|
e21bb89dbd
|
[dhp-actionmanager] partitioning spark job added
|
2020-04-01 18:41:29 +02:00 |
|
Przemysław Jacewicz
|
f9f7350bb9
|
[dhp-actionmanager] common package added with utility classes supporting hadoop and spark envs
|
2020-04-01 18:39:26 +02:00 |
|
Przemysław Jacewicz
|
ad70c23b2e
|
[dhp-actionmanager] pom updated
|
2020-04-01 18:36:00 +02:00 |
|
Przemysław Jacewicz
|
4e910a78d4
|
[dhp-workflows] spark 2 connection properties added
|
2020-04-01 18:29:26 +02:00 |
|
Claudio Atzori
|
1402eb1fe7
|
cleanup
|
2020-04-01 15:38:50 +02:00 |
|
Claudio Atzori
|
7061d07727
|
ActionSets migration serialize the output as plain text files instead of SequenceFiles
|
2020-04-01 14:58:22 +02:00 |
|
Claudio Atzori
|
adcdd2d05e
|
WIP: reimplementing the adjacency list construction process using spark Datasets
|
2020-04-01 14:56:57 +02:00 |
 Sandro La Bruzzo
|
201d79021e
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-31 14:41:41 +02:00 |
|
Sandro La Bruzzo
|
cd7416ae4c
|
first implementation of incremental update of scholix index
|
2020-03-31 14:41:35 +02:00 |
przemek
|
9d1d18d4b9
|
Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype
|
2020-03-31 12:04:58 +02:00 |
|
Claudio Atzori
|
377e1ba840
|
[maven-release-plugin] prepare for next development iteration
|
2020-03-30 20:06:00 +02:00 |
|
Claudio Atzori
|
76d9315129
|
[maven-release-plugin] prepare release dhp-1.1.6
|
2020-03-30 20:05:56 +02:00 |
|
Claudio Atzori
|
ef429010ee
|
removed log file and job-override.properties
|
2020-03-30 20:00:58 +02:00 |
|
Claudio Atzori
|
0fbec69b82
|
use oozie prepare statement to cleanup working directories
|
2020-03-30 19:48:41 +02:00 |
|
Claudio Atzori
|
3af2b8d700
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-30 13:12:21 +02:00 |
|
Claudio Atzori
|
f3f9affd49
|
allow dynamic executors to build XML records
|
2020-03-30 13:12:11 +02:00 |
|
Claudio Atzori
|
2e2d4c4c68
|
adjusted path to template resource
|
2020-03-30 13:11:49 +02:00 |
|
Sandro La Bruzzo
|
62cc257e5c
|
fixed step1 workflow
|
2020-03-27 17:07:34 +01:00 |
|
Sandro La Bruzzo
|
1a7a866861
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-27 15:11:48 +01:00 |
|
Sandro La Bruzzo
|
7cef698f36
|
reformat code
|
2020-03-27 15:11:34 +01:00 |
|
Claudio Atzori
|
1767dfaa3f
|
method can be protected, it is meant to be used only in tests
|
2020-03-27 14:31:26 +01:00 |
|
Sandro La Bruzzo
|
a4b6a51168
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-27 13:48:56 +01:00 |
|
Sandro La Bruzzo
|
15d9106b3f
|
FIxed merge of dhp dedup
|
2020-03-27 13:48:44 +01:00 |
|
Claudio Atzori
|
e196fff212
|
adjusted path for source resource in unit test
|
2020-03-27 13:45:10 +01:00 |
|
Sandro La Bruzzo
|
8c9a56a0c8
|
refactored package name
|
2020-03-27 13:19:33 +01:00 |
|
Sandro La Bruzzo
|
2bd2d6f202
|
Merge branch 'master' of code-repo.d3science.org:D-Net/dnet-hadoop
|
2020-03-27 13:16:36 +01:00 |
|
Sandro La Bruzzo
|
a9935f80d4
|
refactor class name and workflow name for graph mapper, added javadoc
|
2020-03-27 13:16:24 +01:00 |
 Michele Artini
|
ae03948eed
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-27 11:47:07 +01:00 |
|
Michele Artini
|
f6e86b44a6
|
tests
|
2020-03-27 11:46:37 +01:00 |
|
Michele Artini
|
408be3c632
|
test and fixed a problem with datacite namespaces
|
2020-03-27 11:44:50 +01:00 |
|
Claudio Atzori
|
673e744649
|
moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa
|
2020-03-27 10:42:17 +01:00 |
|
Claudio Atzori
|
098fabab3f
|
reorganizing content under dhp-workflows/dhp-graph-mapper
|
2020-03-26 19:44:19 +01:00 |
|
Claudio Atzori
|
77c4294924
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-26 18:26:52 +01:00 |
|
Claudio Atzori
|
43cbcda7ef
|
unit test for SparkGraphImporterJob
|
2020-03-26 18:26:40 +01:00 |
|
Sandro La Bruzzo
|
e04da6d66a
|
merged all oozie wf in one
|
2020-03-26 14:17:07 +01:00 |
|
Sandro La Bruzzo
|
e71e001b58
|
commented test that doesn't work
|
2020-03-26 14:15:21 +01:00 |
|
Sandro La Bruzzo
|
0cd022ad6a
|
merge with master
|
2020-03-26 14:08:29 +01:00 |
|
Claudio Atzori
|
abcd3f5bf5
|
added sample data for unit tests
|
2020-03-26 11:12:52 +01:00 |
|
Sandro La Bruzzo
|
d5f11e27be
|
renamed wf
|
2020-03-26 09:49:23 +01:00 |
|
Sandro La Bruzzo
|
9a37ad0127
|
renamed modules
|
2020-03-26 09:46:46 +01:00 |
|
Sandro La Bruzzo
|
a768226e52
|
updated generate scholix to generate json
|
2020-03-26 09:40:50 +01:00 |
|
Claudio Atzori
|
9dff4adbc3
|
dhp-graph-mapper workflow tests upgraded to junit5
|
2020-03-25 18:25:12 +01:00 |
|
Claudio Atzori
|
cd7dc3e1ae
|
dhp-dedup-openaire workflow tests upgraded to junit5
|
2020-03-25 18:04:23 +01:00 |
|
Claudio Atzori
|
c0e825e713
|
dhp-aggregation workflow tests upgraded to junit5
|
2020-03-25 17:59:45 +01:00 |
|
Michele Artini
|
ebe45003d9
|
fixed some junit packages
|
2020-03-25 16:45:03 +01:00 |
|
Michele Artini
|
d9bfdcd607
|
updated poms
|
2020-03-25 16:31:12 +01:00 |
|
Michele Artini
|
120e823cd1
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-25 16:00:10 +01:00 |
|
Claudio Atzori
|
71ae7dd272
|
renamed module dnet-dedup to dnet-dedup-openaire
|
2020-03-25 15:57:09 +01:00 |
|
Michele Artini
|
fd57722c69
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-25 15:56:49 +01:00 |
|
Claudio Atzori
|
f441f823dd
|
fixed path referencing a test resource file
|
2020-03-25 15:21:46 +01:00 |
|
Claudio Atzori
|
51d0c9bdd7
|
integrated changes from branch dedupTest
|
2020-03-25 15:15:41 +01:00 |
|
Claudio Atzori
|
36f8f2ea66
|
master set to 'yarn' in spark actions, removed path to rawSet from the dedup scan workflow
|
2020-03-25 14:16:06 +01:00 |
|
Michele Artini
|
2559299da4
|
tests
|
2020-03-25 12:25:00 +01:00 |
|
Claudio Atzori
|
2180cc4fe7
|
more fields included in result view definition
|
2020-03-25 11:21:46 +01:00 |
|
Claudio Atzori
|
efb0b7d660
|
master set to 'yarn' in spark actions
|
2020-03-25 11:15:35 +01:00 |
|
Michele Artini
|
0fda2c3a30
|
some tests on db records
|
2020-03-25 09:43:58 +01:00 |
|
miconis
|
02320de371
|
minor changes
|
2020-03-24 17:43:51 +01:00 |
|
miconis
|
8e8b5e8f30
|
roots wf merged in scan wf
|
2020-03-24 17:40:58 +01:00 |
|
Claudio Atzori
|
51ff68db66
|
Merge branch 'dedupTest' of https://code-repo.d4science.org/D-Net/dnet-hadoop into dedupTest
|
2020-03-24 11:18:19 +01:00 |
|
Claudio Atzori
|
1e869e7bed
|
using method available from currently used library
|
2020-03-24 11:17:44 +01:00 |
|
miconis
|
f0d72b76a8
|
package structure fixed
|
2020-03-24 10:51:40 +01:00 |
|
Claudio Atzori
|
aaedbb1b8b
|
WIP: dedup workflow, stage 2
|
2020-03-24 09:59:28 +01:00 |
|
Michele Artini
|
e3760c7f39
|
fix a bug with organization countries
|
2020-03-24 08:43:56 +01:00 |
|
Claudio Atzori
|
8b0ba3d76a
|
posprocessing script correctly run as hive2 action
|
2020-03-23 17:40:39 +01:00 |
|
miconis
|
93e2291291
|
minor changes
|
2020-03-23 17:17:56 +01:00 |
|
miconis
|
f7890a90df
|
implementation of the mechanism that checks the existance of a mergerel file
|
2020-03-23 17:13:30 +01:00 |
|
miconis
|
c20e179f5a
|
structure of the workflows updated
|
2020-03-23 11:43:49 +01:00 |
|
Claudio Atzori
|
658d40ccbe
|
WIP trying to use hive2 actions
|
2020-03-23 11:14:54 +01:00 |
|
Claudio Atzori
|
ecb64e4998
|
Merge branch 'migration_wfs_regular_all_steps'
|
2020-03-23 08:57:01 +01:00 |
|
Michele Artini
|
15160032bd
|
fixed a bug setting some organization fields
|
2020-03-23 08:39:14 +01:00 |
|
Claudio Atzori
|
a4c52661a0
|
WIP: fixing dedup workflows
|
2020-03-20 19:17:24 +01:00 |
|
Claudio Atzori
|
6cb0a9bff0
|
dedup wf directory structure aligned with project commons
|
2020-03-20 16:48:14 +01:00 |
|
miconis
|
e16e644faf
|
implementation of the workflow for entity update and for relations update
|
2020-03-20 13:01:56 +01:00 |
|
przemek
|
638b78f96a
|
Merge remote-tracking branch 'origin/master' into przemyslawjacewicz_actionmanager_impl_prototype
|
2020-03-19 15:12:56 +01:00 |
|
miconis
|
4e82a24af2
|
minor changes and implementation of the create connected components action
|
2020-03-19 15:01:07 +01:00 |
|
Claudio Atzori
|
36236dd1c1
|
action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s)
|
2020-03-19 14:00:38 +01:00 |
|
Claudio Atzori
|
a0ab15a64c
|
need to stick on using guava:11.0.2 as it is the version used by the hadoop components (oozie client for sure). The last version (28.2-jre) breaks the oozie workflow submission
|
2020-03-19 13:58:58 +01:00 |
|
Sandro La Bruzzo
|
0594b92a6d
|
implemented relation with dataset
|
2020-03-19 11:11:07 +01:00 |
|
miconis
|
679b5869e5
|
implementation of the lookup procedure to take dedup conf from the resource profiles
|
2020-03-18 17:41:56 +01:00 |
|
Claudio Atzori
|
abe8fb69a2
|
added global properties, moved postprocessing script inside the oozie_app directory
|
2020-03-18 15:43:54 +01:00 |
|
miconis
|
f32eae5ce9
|
implementation of the spark action for the simrel creation
|
2020-03-18 14:27:49 +01:00 |
|
Claudio Atzori
|
c7e0730720
|
compress the output produced by migration steps 1 and 2
|
2020-03-18 09:34:57 +01:00 |
|
Claudio Atzori
|
2f11e37602
|
fixed expansion of path variables
|
2020-03-17 19:41:07 +01:00 |
|
Claudio Atzori
|
2795b0b096
|
no need to mkdir a the all_entities file
|
2020-03-17 17:22:14 +01:00 |
|
Claudio Atzori
|
19746ad308
|
when reuseContent, reset ${workingPath}/all_entities
|
2020-03-17 17:17:06 +01:00 |
|
Claudio Atzori
|
2f0c85eeb3
|
updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent'
|
2020-03-17 17:04:58 +01:00 |
|
Claudio Atzori
|
b8290b5851
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:45:30 +01:00 |
|
Claudio Atzori
|
4706f24ec5
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:23:54 +01:00 |
|
Claudio Atzori
|
aeb01fa353
|
reading from newline delimited json textfiles instead of sequence files
|
2020-03-17 11:57:24 +01:00 |
|
Claudio Atzori
|
af835f2f98
|
when migrating actionsets from DM cluster, populate the AtomicAction.targetValue when empty (dedup similarities)
|
2020-03-15 18:07:59 +01:00 |
|
Claudio Atzori
|
9c84e21b87
|
added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel
|
2020-03-13 15:56:52 +01:00 |
|
Claudio Atzori
|
8fe7ae1482
|
xml formatting
|
2020-03-13 15:53:56 +01:00 |
|
Przemysław Jacewicz
|
d0c9b0cdd6
|
WIP promote job functions updated
|
2020-03-13 12:36:42 +01:00 |
|
Przemysław Jacewicz
|
8d9b3c5de2
|
WIP action payload mapping into OAF type moved, (local) graph table name enum created, tests fixed
|
2020-03-13 10:01:39 +01:00 |
|
Przemysław Jacewicz
|
5cc560c7e5
|
Removed unnecessary dependency on old OAF model
|
2020-03-13 09:57:46 +01:00 |
|
Sandro La Bruzzo
|
addaaa091f
|
migrate relation from RDD to Dataset
|
2020-03-13 09:13:20 +01:00 |
|
Przemysław Jacewicz
|
3f24593e51
|
WIP: promote job tests and test resources implementation snapshot
|
2020-03-11 17:06:29 +01:00 |
|
Przemysław Jacewicz
|
2e996d610f
|
WIP: promote job functions implementation snapshot
|
2020-03-11 17:02:57 +01:00 |
|
Przemysław Jacewicz
|
cc63cdc9e6
|
WIP: promote job implementation snapshot
|
2020-03-11 17:02:06 +01:00 |
|
Przemysław Jacewicz
|
69540f6f78
|
Serialization-safe supplier added
|
2020-03-11 16:59:05 +01:00 |
|
Przemysław Jacewicz
|
e6e214dab5
|
Oaf merge and get strategy added
|
2020-03-11 16:58:17 +01:00 |
|
Claudio Atzori
|
7b6f0c8756
|
reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki
|
2020-03-10 17:19:17 +01:00 |
|
Claudio Atzori
|
60aedb1110
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-10 17:09:44 +01:00 |
|
Claudio Atzori
|
a3f184fd3f
|
added field websiteurl in related organizations
|
2020-03-10 17:08:58 +01:00 |
|
Claudio Atzori
|
0e95544495
|
fixed serialization for datasource subjects
|
2020-03-10 17:07:44 +01:00 |
|
Sandro La Bruzzo
|
7b28783fb4
|
updated unpaywall mapping
|
2020-03-08 17:00:19 +01:00 |
|
Michele Artini
|
b6efa9d6ab
|
Configuration of the SequenceFile Writer
|
2020-03-05 15:49:14 +01:00 |
|
Claudio Atzori
|
5e342a555c
|
no need to compute the inverse relClass, fixed text() in xpath expressions
|
2020-03-05 12:51:48 +01:00 |
|
Claudio Atzori
|
6ec04d4e02
|
specified column used to perform the join operation in the javadoc
|
2020-03-05 12:50:38 +01:00 |
|
Michele Artini
|
7a2a466161
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-04 14:50:59 +01:00 |
|
Michele Artini
|
755eade2fb
|
fix creation ids
|
2020-03-04 14:49:45 +01:00 |
|
Claudio Atzori
|
6379f32466
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-04 10:57:06 +01:00 |
|
Claudio Atzori
|
0233987603
|
introduced post processing step following the hive DB creation/population
|
2020-03-04 10:56:50 +01:00 |
|
Claudio Atzori
|
1e563bc15e
|
introduced distinct properties driving the resouce usage for the XML record creation and the indexing phase
|
2020-03-04 10:55:11 +01:00 |
|
Claudio Atzori
|
9af3e904be
|
close the SparkSession at the end
|
2020-03-04 10:53:31 +01:00 |
|
Michele Artini
|
e7167b996a
|
logs and closeable
|
2020-03-04 10:46:36 +01:00 |
|
Claudio Atzori
|
25ceec29ab
|
code formatting
|
2020-03-04 10:44:24 +01:00 |
|
Claudio Atzori
|
63c00c5e88
|
fixed typo
|
2020-03-04 10:43:44 +01:00 |
|
Claudio Atzori
|
9cf5ce2e66
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-02 17:03:10 +01:00 |
|
Claudio Atzori
|
bc7cfd5975
|
indexing workflow WIP: fixed projects fundingtree xml conversion, prioritized links between results and projects when limiting them to 100 in the join procedure
|
2020-03-02 17:03:07 +01:00 |
|
Michele Artini
|
4b29a121b0
|
migration using spark in step2
|
2020-03-02 16:12:14 +01:00 |
|
Michele Artini
|
5445a57102
|
migration using spark in step2
|
2020-03-02 16:11:59 +01:00 |
|
Sandro La Bruzzo
|
b32655e48e
|
changed code to save intermediate result
|
2020-02-27 10:18:46 +01:00 |
|
Claudio Atzori
|
60bc2b1a20
|
drop the hive DB before populating it from scratch
|
2020-02-27 10:10:55 +01:00 |
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Sandro La Bruzzo
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f09e065865
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incremented number of repartition
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2020-02-26 19:26:19 +01:00 |
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Sandro La Bruzzo
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071f5c3e52
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fixed NPE
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2020-02-26 15:42:20 +01:00 |
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Sandro La Bruzzo
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a1a6fc8315
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fixed NPE
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2020-02-26 15:42:13 +01:00 |
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Sandro La Bruzzo
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1edf02a3ce
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added log
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2020-02-26 15:25:03 +01:00 |
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Sandro La Bruzzo
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c3ecabd8e8
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fixed NPE
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2020-02-26 14:40:02 +01:00 |
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Sandro La Bruzzo
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5d0f46651b
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fixed NPE
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2020-02-26 14:31:34 +01:00 |
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Sandro La Bruzzo
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bc342bf73a
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fixed wrong generation type in summary
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2020-02-26 12:49:47 +01:00 |
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Sandro La Bruzzo
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3112e21858
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fixed typo
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2020-02-26 12:22:43 +01:00 |
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Sandro La Bruzzo
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119ae6eef5
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fixed wrong loop in the workflow
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2020-02-26 12:18:50 +01:00 |