 Claudio Atzori
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1e7e5180fa
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[Graph model] updated definition of ExternalReference: added alternateLabel, removed description (#6503)
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2021-04-02 12:32:12 +02:00 |
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Claudio Atzori
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7941d7be29
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WIP: using common definitions from ModelConstants
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2021-03-31 18:33:57 +02:00 |
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Claudio Atzori
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72ce741ea6
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WIP: using common definitions from ModelConstants
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2021-03-31 17:07:13 +02:00 |
 Sandro La Bruzzo
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c73072079d
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fix conflicts
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2021-03-22 16:36:31 +01:00 |
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Claudio Atzori
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8d2bb24512
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merged from master
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2021-03-08 15:44:34 +01:00 |
 Alessia Bardi
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32e81c2d89
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non validated rel has null value in validated field
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2021-02-16 11:01:42 +01:00 |
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Claudio Atzori
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29c6f7e255
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classes related to the collection workflow moved into common package; implemented MongoDB collection plugins
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2021-02-12 12:31:02 +01:00 |
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Claudio Atzori
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b34b5a39ca
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index field authoridtypevalue mixes up different author id-type value pairs, dropped in favour of orcidtypevalue
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2021-02-11 09:36:04 +01:00 |
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Alessia Bardi
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986dd969d3
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use the proper import for Lists
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2021-02-10 12:03:54 +01:00 |
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Alessia Bardi
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09fc7e2f78
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serialization of validated flag on relationships
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2021-02-10 11:22:09 +01:00 |
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Claudio Atzori
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82e6c50f3f
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updated solr fields (authoridtypevalue, resultsubject, resultresourcetypename)
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2021-02-09 16:27:04 +01:00 |
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Claudio Atzori
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62bd3c53ee
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Merge branch 'master' into provision_indexing
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2021-02-09 15:46:26 +01:00 |
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Claudio Atzori
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72c57b28fa
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switched project version to 1.2.4-branch_hadoop_aggregator-SNAPSHOT
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2021-02-04 14:08:18 +01:00 |
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Claudio Atzori
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b6f08ce226
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re-adding the old junit:junit dep as solr-test-framework needs it
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2020-12-14 15:07:31 +01:00 |
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Claudio Atzori
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1506f49052
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Xml record serialization for author PIDs: 1) only one value per PID type is allowed; 2) orcid prevails over orcid_pending
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2020-12-14 11:14:03 +01:00 |
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Claudio Atzori
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61cd129ded
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XML serialisation test
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2020-12-11 12:44:53 +01:00 |
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Claudio Atzori
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ce7a319e01
|
using the correct assertion import
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2020-12-11 12:44:17 +01:00 |
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Claudio Atzori
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7fe2433137
|
excluded transitive older junit dependencies, they can compromise the unit test executions
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2020-12-11 12:42:55 +01:00 |
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Claudio Atzori
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d9532446eb
|
imported more diffs from master branch; code formatting
|
2020-12-10 16:14:16 +01:00 |
|
Claudio Atzori
|
12e2f930c8
|
resolved conflicts
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2020-12-10 10:57:39 +01:00 |
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Claudio Atzori
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ff72fcd91a
|
allow orcid_pending to be percolate to the XML graph serialization
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2020-12-09 19:04:50 +01:00 |
|
Claudio Atzori
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211aa04726
|
allow orcid_pending to be percolate to the XML graph serialization
|
2020-12-09 18:08:51 +01:00 |
|
Claudio Atzori
|
026ad40633
|
disabled test
|
2020-12-07 13:50:01 +01:00 |
|
Claudio Atzori
|
cfb55effd9
|
code formatting
|
2020-12-02 11:23:49 +01:00 |
|
Alessia Bardi
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2d15667b4a
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testing XML generation from json object (case AMS ACTA)
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2020-12-02 10:16:26 +01:00 |
|
Claudio Atzori
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d48f388fb2
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Merge branch 'provision_indexing'
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2020-11-19 15:59:55 +01:00 |
|
Claudio Atzori
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7c9feaf9e7
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project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail
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2020-11-19 15:26:20 +01:00 |
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Claudio Atzori
|
3f34757c63
|
merged from master
|
2020-11-19 14:34:54 +01:00 |
|
Claudio Atzori
|
0374d34c3e
|
introduced configuration param outputFormat: HDFS | SOLR
|
2020-11-19 10:34:28 +01:00 |
|
Claudio Atzori
|
5218718e8b
|
updated set of fields from the MDFormatDSResourceType on PROD
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2020-11-18 15:00:41 +01:00 |
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Claudio Atzori
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d9e07a242b
|
extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location
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2020-11-18 14:34:55 +01:00 |
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Claudio Atzori
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29dcff0f34
|
spark complains about missing classes, so here they are again
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2020-11-18 14:32:32 +01:00 |
|
Claudio Atzori
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8177ce7939
|
test for XmlIndexingJob based on a local miniSolrCluster
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2020-11-18 10:58:05 +01:00 |
|
Claudio Atzori
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2bed29eb09
|
WIP: added oozie workflow for grouping graph entities by id
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2020-11-13 10:05:12 +01:00 |
|
Claudio Atzori
|
9b0fb9e958
|
merged from master
|
2020-11-12 09:27:12 +01:00 |
|
Claudio Atzori
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822971f54f
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no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup;
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2020-11-12 09:22:59 +01:00 |
|
Claudio Atzori
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18d9aad70c
|
improved documentation in dhp-graph-provision
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2020-11-10 11:48:55 +01:00 |
|
Claudio Atzori
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58f28296ea
|
ProvisionConstants moved as ModelHardLimits in dhp-common and applied to truncate long abstracts (len > 150000). Further filtering for empty PID values
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2020-10-30 10:56:42 +01:00 |
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Claudio Atzori
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1871d1c6f6
|
solve error java.lang.NoSuchFieldError: INSTANCE when instantiating Solr client
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2020-08-14 11:18:30 +02:00 |
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Claudio Atzori
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3a11a387a9
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data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed
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2020-08-03 14:28:08 +02:00 |
|
Claudio Atzori
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cc5d13da85
|
introduced parameter shouldIndex (true|false)
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2020-07-16 13:46:39 +02:00 |
|
Claudio Atzori
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b098cc3cbe
|
avoid repeating identical values for fields: source, description
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2020-07-16 13:45:53 +02:00 |
|
Claudio Atzori
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7d6e269b40
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reverted CreateRelatedEntitiesJob_phase1 to its previous state
|
2020-07-13 22:54:04 +02:00 |
|
Claudio Atzori
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8e97598eb4
|
avoid to NPE in case of null instances
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2020-07-13 20:46:14 +02:00 |
|
Claudio Atzori
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06c1913062
|
added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations
|
2020-07-10 19:03:33 +02:00 |
|
Claudio Atzori
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4c3836f62e
|
materialize the related entities before joining them
|
2020-07-10 19:00:44 +02:00 |
|
Claudio Atzori
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b21866a2da
|
allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types
|
2020-07-10 13:59:48 +02:00 |
|
Claudio Atzori
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ff4d6214f1
|
experimenting with pruning of relations
|
2020-07-10 10:06:41 +02:00 |
|
Claudio Atzori
|
b383ed42fa
|
pass optional parameter relationFilter to the PrepareRelationJob implementation
|
2020-07-07 14:21:28 +02:00 |
|
Claudio Atzori
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d380b85246
|
unit test for the preparation of the relations
|
2020-07-02 12:42:13 +02:00 |
|
Claudio Atzori
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7817338e05
|
added test to verify the relation pre-processing
|
2020-06-26 17:58:33 +02:00 |
|
Claudio Atzori
|
8d59fdf34e
|
WIP: dataset based PrepareRelationsJob
|
2020-06-26 14:32:58 +02:00 |
|
Claudio Atzori
|
216975c4ec
|
restored complete provision workflow
|
2020-06-25 12:55:52 +02:00 |
|
Claudio Atzori
|
93f627ea51
|
code formatting
|
2020-06-25 12:54:21 +02:00 |
|
Claudio Atzori
|
e62333192c
|
WIP: prepare relation job
|
2020-06-25 12:22:18 +02:00 |
|
Claudio Atzori
|
6933ec11fb
|
WIP: prepare relation job
|
2020-06-25 11:04:12 +02:00 |
|
Sandro La Bruzzo
|
a6c0faac70
|
added test to verify secondary sorting
|
2020-06-25 10:48:15 +02:00 |
|
Claudio Atzori
|
69b0391708
|
WIP: prepare relation job
|
2020-06-25 10:19:56 +02:00 |
|
Claudio Atzori
|
46e76affeb
|
WIP: prepare relation job
|
2020-06-24 19:01:15 +02:00 |
|
Claudio Atzori
|
0e723d378b
|
added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job
|
2020-06-24 18:34:42 +02:00 |
|
Claudio Atzori
|
9cd27183b6
|
[maven-release-plugin] prepare for next development iteration
|
2020-06-22 11:27:44 +02:00 |
|
Claudio Atzori
|
1e3dab0631
|
[maven-release-plugin] prepare release dhp-1.2.3
|
2020-06-22 11:27:39 +02:00 |
|
Claudio Atzori
|
c4d9f1837f
|
[maven-release-plugin] prepare for next development iteration
|
2020-06-12 12:21:08 +02:00 |
|
Claudio Atzori
|
f0746a7605
|
[maven-release-plugin] prepare release dhp-1.2.2
|
2020-06-12 12:21:03 +02:00 |
|
Claudio Atzori
|
463489f59f
|
code formatting
|
2020-06-12 12:03:25 +02:00 |
|
Claudio Atzori
|
4bcad1c9c3
|
Merge branch 'graph_cleaning'
|
2020-06-12 11:40:25 +02:00 |
|
Alessia Bardi
|
e79943965b
|
Fixes #5604: field oamandatepublications in XML
|
2020-06-11 12:49:31 +02:00 |
|
Claudio Atzori
|
67c7b31ba6
|
Merge branch 'master' into graph_cleaning
|
2020-06-10 15:00:35 +02:00 |
|
Claudio Atzori
|
ce12f236bb
|
disabled test, need to need to update the joined_entity.json file
|
2020-06-09 20:07:36 +02:00 |
|
Claudio Atzori
|
a2fdf85ba1
|
WIP: graph cleaner implementation
|
2020-06-09 19:52:53 +02:00 |
|
Claudio Atzori
|
05f269a1c0
|
kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-06-01 00:32:42 +02:00 |
|
Claudio Atzori
|
6f5f498c78
|
restored common properties driving executor-cores and executor-memory in join_organization_relations wf node
|
2020-05-29 11:22:00 +02:00 |
|
Claudio Atzori
|
b2f9564f13
|
WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-05-29 10:58:15 +02:00 |
|
Claudio Atzori
|
a57965a3ea
|
limiting the dimensions of outliers
|
2020-05-28 17:36:37 +02:00 |
|
Claudio Atzori
|
821be1f8b6
|
experimental implementation of custom aggregation using kryo encoders
|
2020-05-28 13:53:13 +02:00 |
|
Claudio Atzori
|
83504ecace
|
limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit
|
2020-05-28 13:52:30 +02:00 |
|
Claudio Atzori
|
ef11593068
|
JoinedEntity.links defined as empty list by default
|
2020-05-28 13:50:44 +02:00 |
|
Claudio Atzori
|
5dea155a87
|
increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase
|
2020-05-28 13:49:59 +02:00 |
|
Claudio Atzori
|
fdd54bad1c
|
code formatting
|
2020-05-27 19:31:54 +02:00 |
|
Claudio Atzori
|
cfd753217c
|
repartition the join_entities in 24k files
|
2020-05-27 12:44:01 +02:00 |
|
Claudio Atzori
|
2f1a623d09
|
sync from master branch
|
2020-05-27 12:39:58 +02:00 |
|
Claudio Atzori
|
9e4ec1543b
|
updated test
|
2020-05-27 12:38:42 +02:00 |
|
Claudio Atzori
|
8047d16dd9
|
added RDD based adjacency list creation procedure
|
2020-05-27 12:38:12 +02:00 |
|
Claudio Atzori
|
f057dcdf65
|
limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES
|
2020-05-27 12:37:33 +02:00 |
|
Claudio Atzori
|
4e36d689dd
|
fixed XML serialization for children sub-elements (duplicates & externalreferences)
|
2020-05-26 18:30:40 +02:00 |
|
Claudio Atzori
|
b8e541a454
|
fixing repeated organization.websiteurl in organization entities (#5645) as well as project.ecinternationalorganizationeurinterests
|
2020-05-26 10:30:09 +02:00 |
|
Claudio Atzori
|
7582532e73
|
[maven-release-plugin] prepare for next development iteration
|
2020-05-25 19:48:18 +02:00 |
|
Claudio Atzori
|
01c2e93395
|
[maven-release-plugin] prepare release dhp-1.2.1
|
2020-05-25 19:48:14 +02:00 |
|
Claudio Atzori
|
925d933204
|
making XmlRecordFactory immune to graph encoding changes (mostly to avoid NPEs)
|
2020-05-22 08:50:44 +02:00 |
|
Claudio Atzori
|
b33dd58be4
|
replaced parameter 'reuseRecords' with 'resumeFrom', allowing to restart the provision workflow execution from any step, useful for manual submissions or debugging
|
2020-05-22 08:50:06 +02:00 |
|
Claudio Atzori
|
dbfb9c19fe
|
minor changes
|
2020-05-21 10:00:14 +02:00 |
|
Claudio Atzori
|
d7d2a0637f
|
added extra parameters to the provision indexing workflow
|
2020-05-20 14:55:38 +02:00 |
|
Claudio Atzori
|
0bdfbb0a57
|
reintroduced RDD based relation cut off procedure
|
2020-05-19 15:02:21 +02:00 |
|
Claudio Atzori
|
60c40618d3
|
[maven-release-plugin] prepare for next development iteration
|
2020-05-11 10:17:14 +02:00 |
|
Claudio Atzori
|
c267d958d5
|
[maven-release-plugin] prepare release dhp-1.2.0
|
2020-05-11 10:17:10 +02:00 |
|
Claudio Atzori
|
42f1a2bf94
|
bumped project version to 1.2.0-SNAPSHOT
|
2020-05-11 10:05:57 +02:00 |
|
Claudio Atzori
|
0ccc864ad9
|
[maven-release-plugin] prepare for next development iteration
|
2020-05-08 17:01:31 +02:00 |
|
Claudio Atzori
|
6e47c724c6
|
[maven-release-plugin] prepare release dhp-1.1.7
|
2020-05-08 17:01:27 +02:00 |
|
Claudio Atzori
|
8c67073a07
|
force speculative execution to false
|
2020-05-08 09:42:21 +02:00 |
|
Claudio Atzori
|
bac37b3973
|
fixed children expansion in XML records
|
2020-05-04 11:51:17 +02:00 |