Commit Graph

220 Commits

Author SHA1 Message Date
Miriam Baglioni b37b9352d7 added constant value for semantic relationship between projects and results 2020-11-25 13:41:08 +01:00
Miriam Baglioni 72bb0fe360 changed directory name 2020-11-24 16:47:07 +01:00
Miriam Baglioni b9b6bdb2e6 fixing issue on previous implementation 2020-11-24 14:44:53 +01:00
Miriam Baglioni 7e940f1991 changed to consider the modification for the specification of the type of dump 2020-11-24 14:43:34 +01:00
Miriam Baglioni 62928ef7a5 changed to save the communities_infrastructures information as the other entity dumps: in a json.gz file 2020-11-24 14:42:41 +01:00
Miriam Baglioni 3319440c53 changed the direction of the relation between projects and result considered to select the results linked to projects 2020-11-24 14:41:09 +01:00
Miriam Baglioni 00c377dac2 added specification of MapFunction types in map 2020-11-24 14:40:22 +01:00
Miriam Baglioni 44db258dc4 added enumerated for the dump type 2020-11-24 14:38:06 +01:00
Miriam Baglioni 1832708c42 modified boolean variable with string one whcih specify the type of dump we are performing: complete, community or funder 2020-11-24 14:37:36 +01:00
Miriam Baglioni 259c67ce36 fixed issue in path name 2020-11-20 12:32:23 +01:00
Miriam Baglioni 0a9db67eec - 2020-11-20 12:21:33 +01:00
Miriam Baglioni 24c56fa7a3 new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult. 2020-11-19 19:15:39 +01:00
Miriam Baglioni fafb688887 - 2020-11-18 18:56:48 +01:00
Miriam Baglioni 906db690d2 - 2020-11-18 17:43:08 +01:00
Miriam Baglioni 5402062ff5 changed parameter file with the ono associated to the job 2020-11-18 16:58:20 +01:00
Miriam Baglioni a172a37ad1 fixed typo 2020-11-18 16:55:07 +01:00
Miriam Baglioni 46ba3793f6 code, workflow and parameters for the dump of the results associated to funders 2020-11-18 16:47:31 +01:00
Claudio Atzori d10447e747 re-packaged graph dump workflow sources 2020-11-05 17:38:18 +01:00
Miriam Baglioni be5ed8f554 added check to avoid sending empty metadata. 2020-11-05 16:10:17 +01:00
Miriam Baglioni e9ac471ae9 removed dependency from classes for the pid graph dump 2020-11-04 18:04:42 +01:00
Miriam Baglioni bac307155a removed properties specific for pid graph dump 2020-11-04 17:28:04 +01:00
Miriam Baglioni 9c9d50f486 removed code specific for pid graph dump 2020-11-04 17:26:22 +01:00
Miriam Baglioni 5669890934 removed commented lines 2020-11-04 17:15:21 +01:00
Miriam Baglioni 6a89f59be9 removed commented lines 2020-11-04 17:13:59 +01:00
Miriam Baglioni 56150d7e5e removed all code related to the dump of pids graph 2020-11-04 17:13:12 +01:00
Miriam Baglioni 16c54a96f8 removed pid dump 2020-11-04 17:11:32 +01:00
Miriam Baglioni 7d2eda43ca added new non mandatory property publish to determine if to publish the upload or leave it pending. Default value flase 2020-11-03 16:57:01 +01:00
Miriam Baglioni cbbb1bdc54 moved business logic to new class in common for handling the zip of hte archives 2020-11-03 16:55:50 +01:00
Miriam Baglioni dabb33e018 changed the discriminant for which split the file 2020-10-30 17:52:22 +01:00
Miriam Baglioni 0fba08eae4 max allowed size per file 10 Gb 2020-10-30 16:05:55 +01:00
Miriam Baglioni b828587252 prevent the code to cicle indefinetly 2020-10-30 15:01:25 +01:00
Miriam Baglioni f747e303ac classes for dumping of the graph as ttl file 2020-10-30 14:13:45 +01:00
Miriam Baglioni 16baf5b69e formatting 2020-10-30 14:13:14 +01:00
Miriam Baglioni a9eef9c852 added check for possible Optional value in relation dataInfo 2020-10-30 14:12:28 +01:00
Miriam Baglioni 5f4de9a962 formatting 2020-10-30 14:11:40 +01:00
Miriam Baglioni 14bf2e7238 added option to split dumps bigger that 40Gb on different files 2020-10-30 14:09:04 +01:00
Miriam Baglioni d2374e3b9e added code to handle cases where the funding tree is not existing 2020-10-27 16:15:21 +01:00
Miriam Baglioni 5d3012eeb4 changed code to dump only the programme list and not the classification list 2020-10-27 16:14:18 +01:00
Miriam Baglioni 3241ec1777 added connection timeout and socket timeout 600 sec 2020-10-27 16:12:11 +01:00
Miriam Baglioni 32bffb0134 changed the name from communities_infrastructures to communities_infrastuctures.json 2020-10-05 11:24:17 +02:00
Miriam Baglioni 25cbcf6114 changed to solve issues about names. context renamed communities_infrastructure.json and removed the double json.gz extention to the name of the part in the tar 2020-10-02 12:17:46 +02:00
Miriam Baglioni cfb5766c6b removed double json.gz from names of files in the tar 2020-10-01 17:18:34 +02:00
Miriam Baglioni ed5239f9ec added new code to handle the new possibility to upload files to an already open deposition 2020-09-25 16:34:32 +02:00
Miriam Baglioni 3a8c524fce refactor 2020-09-25 16:34:02 +02:00
Miriam Baglioni de6c4d46d8 fixed conflicts 2020-09-24 15:35:01 +02:00
Miriam Baglioni 39eb8ab25b changed the dump to move from h2020programme to h2020classification 2020-09-23 17:33:00 +02:00
Miriam Baglioni 1f893e63dc - 2020-09-14 14:33:10 +02:00
Claudio Atzori 8a523474b7 code formatting 2020-09-07 11:40:16 +02:00
Miriam Baglioni 8694bb9b31 refactoring due to compilation 2020-08-24 17:07:34 +02:00
Miriam Baglioni 8a069a4fea - 2020-08-24 17:01:30 +02:00
Miriam Baglioni 34fa96f3b1 - 2020-08-24 17:00:20 +02:00
Miriam Baglioni 5fb2949cb8 added utils methods 2020-08-24 17:00:09 +02:00
Miriam Baglioni 2a540b6c01 added constants for the pid graph dump 2020-08-24 16:55:35 +02:00
Miriam Baglioni bef79d3bdf first attempt to the dump of pids graph 2020-08-24 16:49:38 +02:00
Miriam Baglioni 85203c16e3 merge branch with master 2020-08-19 11:49:03 +02:00
Miriam Baglioni 1c593a9cfe - 2020-08-19 11:29:51 +02:00
Miriam Baglioni e42b2f5ae2 - 2020-08-19 11:29:09 +02:00
Miriam Baglioni f81ee22418 changed to mirror the changes in the model (Instance, CommunityInstance, GraphResult) 2020-08-19 11:28:26 +02:00
Miriam Baglioni 387be43fd4 changed to discriminate if dumping all the results type together or each one in its own archive 2020-08-19 11:25:27 +02:00
Miriam Baglioni dc5096a327 refactoring due to compilation 2020-08-19 10:57:36 +02:00
Miriam Baglioni 09f5b92763 added specific reference to class 2020-08-14 20:00:09 +02:00
Miriam Baglioni a5043de5da added method to get the mapped instance 2020-08-13 18:45:50 +02:00
Miriam Baglioni fcd10f452c changed because of #40 (comment) 2020-08-13 12:55:32 +02:00
Miriam Baglioni bfd1fcde6d removed not useful method and changed because of #40 (comment) and #40 (comment) 2020-08-13 12:14:37 +02:00
Miriam Baglioni 7fd8397123 apply changes in #40 (comment) 2020-08-13 12:13:15 +02:00
Miriam Baglioni 753d448cc9 apply changes in #40 (comment) 2020-08-13 12:12:58 +02:00
Miriam Baglioni c0e071fa26 apply changes in #40 (comment) 2020-08-13 12:12:40 +02:00
Miriam Baglioni 526db915bc apply changes in #40 (comment) 2020-08-13 12:12:16 +02:00
Miriam Baglioni b0fab0d138 apply changes in #40 (comment) 2020-08-13 12:11:57 +02:00
Miriam Baglioni 1b6320b251 apply changes in #40 (comment) 2020-08-13 12:11:41 +02:00
Miriam Baglioni 743d31be22 apply changes in #40 (comment) 2020-08-13 12:11:22 +02:00
Miriam Baglioni 65b48df652 apply changes in #40 (comment) 2020-08-13 12:11:06 +02:00
Miriam Baglioni 90b54d3efb apply changes in #40 (comment) 2020-08-13 12:08:24 +02:00
Miriam Baglioni 69bbb9592a apply changes in #40 (comment) 2020-08-13 12:07:39 +02:00
Miriam Baglioni 945323299a apply changes in #40 (comment) 2020-08-13 12:07:24 +02:00
Miriam Baglioni e04c993247 apply changes in #40 (comment) 2020-08-13 12:07:07 +02:00
Miriam Baglioni ed0812d0ce apply changes in #40 (comment) 2020-08-13 12:06:49 +02:00
Miriam Baglioni d55cfe0ea5 apply changes in #40 (comment) 2020-08-13 12:06:20 +02:00
Miriam Baglioni 80866bec7d apply changes in #40 (comment) 2020-08-13 12:06:05 +02:00
Miriam Baglioni 1400978c0a apply changes in #40 (comment) 2020-08-13 12:05:44 +02:00
Miriam Baglioni 7b941a2e0a apply changes in #40 (comment) 2020-08-13 12:05:17 +02:00
Miriam Baglioni f7474f50fe apply changes in #40 (comment) 2020-08-13 12:04:52 +02:00
Miriam Baglioni 367203f412 apply changes in #40 (comment) 2020-08-13 12:04:33 +02:00
Miriam Baglioni 3ab4809d31 apply changes in #40 (comment) 2020-08-13 12:04:10 +02:00
Miriam Baglioni 235d4e4d6e moved Context as relevant for Communities dump 2020-08-12 18:16:45 +02:00
Miriam Baglioni 7400cd019d removed not needed variable 2020-08-12 10:03:33 +02:00
Miriam Baglioni 98d28bab5c fixed missing _ in context nsprefix 2020-08-12 10:00:18 +02:00
Miriam Baglioni 0603ec4757 changed test to upload the dump for covid-19 community 2020-08-11 15:43:25 +02:00
Miriam Baglioni cf4d918787 added description, changed parameter name and added method 2020-08-11 15:27:31 +02:00
Miriam Baglioni dc5fc5366d Creation of an archive for each related dump part 2020-08-11 15:26:06 +02:00
Miriam Baglioni 0ce49049d6 added description 2020-08-11 15:25:11 +02:00
Miriam Baglioni 9bae991167 added description of the class 2020-08-11 11:20:43 +02:00
Miriam Baglioni 341dc59ead removed the repartition(1). Added code for the creation of an archive containing all the parts dumped for each community 2020-08-11 11:18:58 +02:00
Miriam Baglioni 1991a49f70 removed reference to isLookUp to get the communityMap 2020-08-10 18:02:56 +02:00
Miriam Baglioni fe88904df0 changed the wf definition 2020-08-10 12:01:14 +02:00
Miriam Baglioni 87856467e2 removed isLookUpUrl and added code to read from HDSF the communitymap 2020-08-10 11:38:41 +02:00
Miriam Baglioni 3aedfdf0d6 added option to do a new deposition or new version of an old deposition 2020-08-07 17:49:14 +02:00
Miriam Baglioni 1b3ad1bce6 filter out authors pid (only orcid). Added check to get unique provenance for context id. filtr out countries with code UNKNOWN 2020-08-07 17:48:18 +02:00
Miriam Baglioni 5ceb8c5f0a moved constants from graph.Constants 2020-08-07 17:46:47 +02:00
Miriam Baglioni 6c65c93c0e refactoring 2020-08-07 17:45:35 +02:00