 Claudio Atzori
|
7185158942
|
ignore missing properties
|
2020-12-29 11:06:28 +01:00 |
|
Claudio Atzori
|
28460c2cd1
|
using com.fasterxml.jackson.databind.ObjectMapper instead of org.codehaus.jackson.map.ObjectMapper
|
2020-12-23 16:59:52 +01:00 |
|
Claudio Atzori
|
723b01f9e9
|
trivial: the less magic numbers and values around, the better
|
2020-12-23 12:22:48 +01:00 |
|
Claudio Atzori
|
6cb0dc3f43
|
extended OCRID cleaning procedure
|
2020-12-21 11:40:17 +01:00 |
|
Claudio Atzori
|
47270d9af5
|
lenient mock can be lenient
|
2020-12-18 15:38:59 +01:00 |
 Alessia Bardi
|
f9a8fd8bbd
|
updated test record for textgrid
|
2020-12-17 11:59:45 +01:00 |
 Michele Artini
|
991e675dc6
|
validation in claim rels
|
2020-12-14 15:41:25 +01:00 |
|
Claudio Atzori
|
12e2f930c8
|
resolved conflicts
|
2020-12-10 10:57:39 +01:00 |
|
Alessia Bardi
|
112da6d76a
|
in theory, just auto-formatting after mvn compile
|
2020-12-09 20:00:27 +01:00 |
|
Alessia Bardi
|
bece04b330
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-12-09 19:54:43 +01:00 |
|
Alessia Bardi
|
426b76ee8e
|
more asserts for TextGrid record
|
2020-12-09 19:46:11 +01:00 |
|
Claudio Atzori
|
4705144918
|
Merge pull request 'rel_project_validation' (#69) from rel_project_validation into master
LGTM
|
2020-12-09 19:01:20 +01:00 |
|
Claudio Atzori
|
ada21ad920
|
Merge pull request 'dump of the results related to at least one project' (#61) from miriam.baglioni/dnet-hadoop:dump into master
LGTM
|
2020-12-09 17:22:56 +01:00 |
|
Michele Artini
|
1bc9adc10d
|
default trust for validated rels
|
2020-12-09 16:18:37 +01:00 |
|
Michele Artini
|
5f21a356fd
|
reindent
|
2020-12-09 11:24:30 +01:00 |
|
Michele Artini
|
370a5e650b
|
validation attributes in resultProject relations
|
2020-12-09 11:18:26 +01:00 |
|
Claudio Atzori
|
a104a632df
|
cleanup
|
2020-12-04 16:32:47 +01:00 |
 Miriam Baglioni
|
5fb65ffc4a
|
merge branch with master
|
2020-12-03 11:24:35 +01:00 |
|
Miriam Baglioni
|
ea88dc3401
|
fixed issue in property name
|
2020-12-03 11:24:23 +01:00 |
|
Claudio Atzori
|
cfb55effd9
|
code formatting
|
2020-12-02 11:23:49 +01:00 |
|
Claudio Atzori
|
57f448b7a4
|
graph cleaning workflow separate orcid_pending from orcid, depending on the author pid provenance
|
2020-12-02 10:44:05 +01:00 |
|
Alessia Bardi
|
a417624670
|
tests for raw graph mapping
|
2020-12-02 10:15:26 +01:00 |
|
Claudio Atzori
|
893ac4a77b
|
GenerateEntitiesApplication can be configured to hash the id value or not
|
2020-12-02 09:30:06 +01:00 |
|
Claudio Atzori
|
2c407e775e
|
GenerateEntitiesApplication can be configured to hash the id value or not
|
2020-11-30 12:00:38 +01:00 |
|
Claudio Atzori
|
e731a7658d
|
cleaning texts to remove tab characters too
|
2020-11-27 09:00:04 +01:00 |
|
Claudio Atzori
|
c1b9a4045a
|
grouping of records will be performed by the dedup workflow
|
2020-11-26 10:59:10 +01:00 |
|
Miriam Baglioni
|
124591a7f3
|
refactoring
|
2020-11-25 18:23:28 +01:00 |
|
Miriam Baglioni
|
1a89f8211c
|
#61 (comment)
|
2020-11-25 18:12:40 +01:00 |
|
Miriam Baglioni
|
5fbe54ef54
|
#61 (comment)
|
2020-11-25 18:10:28 +01:00 |
|
Miriam Baglioni
|
ed01e5a5e1
|
#61 (comment)
|
2020-11-25 18:09:34 +01:00 |
|
Miriam Baglioni
|
d4ddde2ef2
|
changed because of #61 (comment)
|
2020-11-25 18:01:01 +01:00 |
|
Miriam Baglioni
|
f5e5e92a10
|
changed because of #61 (comment)
|
2020-11-25 17:58:53 +01:00 |
|
Miriam Baglioni
|
1df94b85b4
|
changed because of #61 (comment)
|
2020-11-25 17:57:43 +01:00 |
|
Claudio Atzori
|
dfd6205b95
|
Consistency graph workflow merges all the entities by ID
|
2020-11-25 14:55:32 +01:00 |
|
Miriam Baglioni
|
90d4369fd2
|
added test to verify the compression in writing community info on hdfs
|
2020-11-25 14:34:58 +01:00 |
|
Miriam Baglioni
|
6750e33d69
|
merge branch with master
|
2020-11-25 14:09:01 +01:00 |
|
Miriam Baglioni
|
b2c455f883
|
added java doc
|
2020-11-25 14:08:09 +01:00 |
|
Miriam Baglioni
|
1f130cdf92
|
changed the relation (produces -> isProducedBy) due to the change in the code
|
2020-11-25 14:04:26 +01:00 |
|
Miriam Baglioni
|
e758d5d9b4
|
refactoring
|
2020-11-25 13:46:39 +01:00 |
|
Miriam Baglioni
|
87a9f616ae
|
refactoring and addition of the funder nsp first part as nome for the dump insteasd of the whole nsp
|
2020-11-25 13:45:41 +01:00 |
|
Miriam Baglioni
|
e7e418e444
|
added decision node to verify if to upload in Zenodo
|
2020-11-25 13:44:10 +01:00 |
|
Miriam Baglioni
|
305e3d0c9c
|
added resource file for relation with relClass = isProducedBy
|
2020-11-25 13:43:41 +01:00 |
|
Miriam Baglioni
|
21ce175d17
|
added FilterFunction specification if filter operation
|
2020-11-25 13:42:31 +01:00 |
|
Miriam Baglioni
|
bde6d337dd
|
test classes for dump of results related to funders
|
2020-11-25 13:42:01 +01:00 |
|
Miriam Baglioni
|
b37b9352d7
|
added constant value for semantic relationship between projects and results
|
2020-11-25 13:41:08 +01:00 |
|
Claudio Atzori
|
36173c13a5
|
reverted filters in the clening process
|
2020-11-25 10:24:42 +01:00 |
|
Claudio Atzori
|
eeebd5a920
|
Cleanig workflow: remove newlines from titles, descriptions, subjects
|
2020-11-24 18:40:25 +01:00 |
|
Claudio Atzori
|
e1a1bb3ee4
|
moved class CleaningFunctions in the correct package. Remove newlines from titles, descriptions, subjects
|
2020-11-24 18:34:03 +01:00 |
|
Miriam Baglioni
|
72bb0fe360
|
changed directory name
|
2020-11-24 16:47:07 +01:00 |
|
Miriam Baglioni
|
39f4a20873
|
chenged the path and the name for saving the communities_infrastructures dump file
|
2020-11-24 14:47:32 +01:00 |
|
Miriam Baglioni
|
7e14452a87
|
final versione of the wf to get the dump of results associated to at least one funder per funder
|
2020-11-24 14:46:34 +01:00 |
|
Miriam Baglioni
|
c167a18057
|
added new parameter for the dumpType
|
2020-11-24 14:45:50 +01:00 |
|
Miriam Baglioni
|
54a309bb6b
|
refactoring
|
2020-11-24 14:45:30 +01:00 |
|
Miriam Baglioni
|
35ecea8842
|
changed to consider the modification for the specification of the type of dump
|
2020-11-24 14:45:15 +01:00 |
|
Miriam Baglioni
|
b9b6bdb2e6
|
fixing issue on previous implementation
|
2020-11-24 14:44:53 +01:00 |
|
Miriam Baglioni
|
7e940f1991
|
changed to consider the modification for the specification of the type of dump
|
2020-11-24 14:43:34 +01:00 |
|
Miriam Baglioni
|
62928ef7a5
|
changed to save the communities_infrastructures information as the other entity dumps: in a json.gz file
|
2020-11-24 14:42:41 +01:00 |
|
Claudio Atzori
|
33bae02451
|
reverted behaviour of the cleaning workflow: grouping entities by ID will be managed differently
|
2020-11-24 14:42:33 +01:00 |
|
Miriam Baglioni
|
3319440c53
|
changed the direction of the relation between projects and result considered to select the results linked to projects
|
2020-11-24 14:41:09 +01:00 |
|
Miriam Baglioni
|
00c377dac2
|
added specification of MapFunction types in map
|
2020-11-24 14:40:22 +01:00 |
|
Miriam Baglioni
|
44db258dc4
|
added enumerated for the dump type
|
2020-11-24 14:38:06 +01:00 |
|
Miriam Baglioni
|
1832708c42
|
modified boolean variable with string one whcih specify the type of dump we are performing: complete, community or funder
|
2020-11-24 14:37:36 +01:00 |
|
Miriam Baglioni
|
259c67ce36
|
fixed issue in path name
|
2020-11-20 12:32:23 +01:00 |
|
Miriam Baglioni
|
0a9db67eec
|
-
|
2020-11-20 12:21:33 +01:00 |
|
Miriam Baglioni
|
d362f2637d
|
merge branch with master
|
2020-11-19 19:17:20 +01:00 |
|
Miriam Baglioni
|
cf3f47563f
|
new parameter files
|
2020-11-19 19:16:05 +01:00 |
|
Miriam Baglioni
|
24c56fa7a3
|
new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult.
|
2020-11-19 19:15:39 +01:00 |
|
Claudio Atzori
|
fcbb05eb21
|
cleanup
|
2020-11-19 15:14:33 +01:00 |
|
Claudio Atzori
|
3f34757c63
|
merged from master
|
2020-11-19 14:34:54 +01:00 |
|
Miriam Baglioni
|
fafb688887
|
-
|
2020-11-18 18:56:48 +01:00 |
|
Miriam Baglioni
|
906db690d2
|
-
|
2020-11-18 17:43:08 +01:00 |
|
Claudio Atzori
|
ede7fae6c8
|
Merge pull request 'XML record indexing test' (#58) from provision_indexing into master
|
2020-11-18 17:04:34 +01:00 |
|
Miriam Baglioni
|
5402062ff5
|
changed parameter file with the ono associated to the job
|
2020-11-18 16:58:20 +01:00 |
|
Miriam Baglioni
|
a172a37ad1
|
fixed typo
|
2020-11-18 16:55:07 +01:00 |
|
Miriam Baglioni
|
46ba3793f6
|
code, workflow and parameters for the dump of the results associated to funders
|
2020-11-18 16:47:31 +01:00 |
|
Miriam Baglioni
|
57cac36898
|
changed the workflow name
|
2020-11-18 13:38:03 +01:00 |
|
Claudio Atzori
|
8177ce7939
|
test for XmlIndexingJob based on a local miniSolrCluster
|
2020-11-18 10:58:05 +01:00 |
|
Alessia Bardi
|
10e673660f
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-11-18 10:01:23 +01:00 |
|
Alessia Bardi
|
be7b310cef
|
rel semantcis ignore case
|
2020-11-18 10:01:20 +01:00 |
|
Michele Artini
|
33da2e3d6c
|
xpaths for dateOfCollection and dateOfTransformation
|
2020-11-18 09:26:20 +01:00 |
|
Alessia Bardi
|
8f87020a50
|
#56: map relevantDates from aggregated ODF records
|
2020-11-17 18:42:09 +01:00 |
|
Alessia Bardi
|
7e0a76a8ac
|
test fr TextGrid
|
2020-11-17 18:39:25 +01:00 |
|
Claudio Atzori
|
cfc01f136e
|
PID filtering based on a blacklist
|
2020-11-17 12:27:06 +01:00 |
|
Claudio Atzori
|
6ab1ce53c9
|
fixed condition in result pid cleaning; cleanup
|
2020-11-16 10:09:17 +01:00 |
|
Claudio Atzori
|
4de8c8b237
|
fixed workflow variable name
|
2020-11-16 10:03:11 +01:00 |
|
Claudio Atzori
|
331d621800
|
added test resource
|
2020-11-14 12:16:15 +01:00 |
|
Claudio Atzori
|
5d4e34e26a
|
fixed typo in variable name
|
2020-11-14 10:32:26 +01:00 |
|
Claudio Atzori
|
768bc5304c
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-11-13 15:40:34 +01:00 |
|
Claudio Atzori
|
93f7b7974f
|
Merge pull request 'trust truncated to 3 decimals' (#24) from trunc_trust into master
LGTM
|
2020-11-13 15:40:02 +01:00 |
|
Claudio Atzori
|
528231a287
|
grouping graph entities by id turned out to be an easy extension for the already existing cleaning workflow
|
2020-11-13 15:37:48 +01:00 |
|
Claudio Atzori
|
2bed29eb09
|
WIP: added oozie workflow for grouping graph entities by id
|
2020-11-13 10:05:12 +01:00 |
|
Claudio Atzori
|
13e36a4da0
|
WIP: added oozie workflow for grouping graph entities by id
|
2020-11-13 10:05:02 +01:00 |
|
Claudio Atzori
|
9b0fb9e958
|
merged from master
|
2020-11-12 09:27:12 +01:00 |
|
Michele Artini
|
40160d171f
|
organizations pids
|
2020-11-09 12:58:36 +01:00 |
 Sandro La Bruzzo
|
027ef2326c
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-11-06 17:12:42 +01:00 |
|
Sandro La Bruzzo
|
cd27df91a1
|
fixed bug on missing relation in ANDS
|
2020-11-06 17:12:31 +01:00 |
|
Claudio Atzori
|
d10447e747
|
re-packaged graph dump workflow sources
|
2020-11-05 17:38:18 +01:00 |
|
Claudio Atzori
|
2d76497488
|
cleanup
|
2020-11-05 17:10:24 +01:00 |
|
Miriam Baglioni
|
f8e9bda24c
|
merge branch with master
|
2020-11-05 16:31:18 +01:00 |
|
Miriam Baglioni
|
be5ed8f554
|
added check to avoid sending empty metadata.
|
2020-11-05 16:10:17 +01:00 |
|
Claudio Atzori
|
2148a51fae
|
minor changes
|
2020-11-05 11:24:12 +01:00 |
|
Claudio Atzori
|
4625b7486e
|
code formatting
|
2020-11-04 18:12:43 +01:00 |
|
Miriam Baglioni
|
e9ac471ae9
|
removed dependency from classes for the pid graph dump
|
2020-11-04 18:04:42 +01:00 |
|
Miriam Baglioni
|
b90a945c49
|
removed property files for pid graph dump
|
2020-11-04 17:28:33 +01:00 |
|
Miriam Baglioni
|
bac307155a
|
removed properties specific for pid graph dump
|
2020-11-04 17:28:04 +01:00 |
|
Miriam Baglioni
|
9c9d50f486
|
removed code specific for pid graph dump
|
2020-11-04 17:26:22 +01:00 |
|
Miriam Baglioni
|
5669890934
|
removed commented lines
|
2020-11-04 17:15:21 +01:00 |
|
Miriam Baglioni
|
6a89f59be9
|
removed commented lines
|
2020-11-04 17:13:59 +01:00 |
|
Miriam Baglioni
|
56150d7e5e
|
removed all code related to the dump of pids graph
|
2020-11-04 17:13:12 +01:00 |
|
Miriam Baglioni
|
16c54a96f8
|
removed pid dump
|
2020-11-04 17:11:32 +01:00 |
|
Miriam Baglioni
|
0cac5436ff
|
Merge branch 'dump' of code-repo.d4science.org:miriam.baglioni/dnet-hadoop into dump
|
2020-11-04 13:21:11 +01:00 |
|
Alessia Bardi
|
51808b5afd
|
Updated descriptions
|
2020-11-04 12:29:48 +01:00 |
|
Alessia Bardi
|
e6becf8659
|
Updated descriptions
|
2020-11-04 12:17:57 +01:00 |
|
Alessia Bardi
|
0abe0eee33
|
Updated descriptions
|
2020-11-04 12:15:30 +01:00 |
|
Alessia Bardi
|
f6ab238f5d
|
Updated descriptions
|
2020-11-04 11:50:47 +01:00 |
|
Miriam Baglioni
|
c010a8442f
|
fixed issue on test code
|
2020-11-03 17:26:51 +01:00 |
|
Miriam Baglioni
|
8ec7a61188
|
merge branch with master
|
2020-11-03 16:59:08 +01:00 |
|
Miriam Baglioni
|
c209284ca7
|
new schemas for the entities in the dump with added descriptions
|
2020-11-03 16:58:08 +01:00 |
|
Miriam Baglioni
|
08806deddf
|
added the splitSize non mandatory parameter. Default size 10G
|
2020-11-03 16:57:34 +01:00 |
|
Miriam Baglioni
|
7d2eda43ca
|
added new non mandatory property publish to determine if to publish the upload or leave it pending. Default value flase
|
2020-11-03 16:57:01 +01:00 |
|
Miriam Baglioni
|
cbbb1bdc54
|
moved business logic to new class in common for handling the zip of hte archives
|
2020-11-03 16:55:50 +01:00 |
|
Miriam Baglioni
|
d4382b54df
|
moved the tar archive with maz size on common module
|
2020-11-03 16:54:50 +01:00 |
|
Claudio Atzori
|
86d6fbe95b
|
refactoring: CleaningFunctions and OafMapperUtils moved in dhp-commong
|
2020-11-03 12:19:46 +01:00 |
|
Claudio Atzori
|
8471888ad3
|
Merge branch 'graph_cleaning' into stable_ids
|
2020-11-03 11:52:47 +01:00 |
|
Claudio Atzori
|
5310e56dba
|
remove empy PIDs
|
2020-11-03 11:52:10 +01:00 |
|
Claudio Atzori
|
3fcd669e99
|
result merge operation leverage on custom ResultTypeComparator in the aggregator graph construction
|
2020-11-03 10:53:23 +01:00 |
|
Claudio Atzori
|
09e44dabff
|
Merge branch 'master' into stable_ids
|
2020-11-02 12:16:01 +01:00 |
|
Sandro La Bruzzo
|
754c86f33e
|
fixed test to work on jenkins
|
2020-11-02 09:35:01 +01:00 |
|
Miriam Baglioni
|
dabb33e018
|
changed the discriminant for which split the file
|
2020-10-30 17:52:22 +01:00 |
|
Miriam Baglioni
|
0fba08eae4
|
max allowed size per file 10 Gb
|
2020-10-30 16:05:55 +01:00 |
|
Claudio Atzori
|
4ca75d6951
|
Merge pull request 'Dedup ID creation policy' (#48) from deduptesting into stable_ids
|
2020-10-30 15:15:32 +01:00 |
|
Miriam Baglioni
|
b828587252
|
prevent the code to cicle indefinetly
|
2020-10-30 15:01:25 +01:00 |
|
Miriam Baglioni
|
f747e303ac
|
classes for dumping of the graph as ttl file
|
2020-10-30 14:13:45 +01:00 |
|
Miriam Baglioni
|
16baf5b69e
|
formatting
|
2020-10-30 14:13:14 +01:00 |
|
Miriam Baglioni
|
a9eef9c852
|
added check for possible Optional value in relation dataInfo
|
2020-10-30 14:12:28 +01:00 |
|
Miriam Baglioni
|
5f4de9a962
|
formatting
|
2020-10-30 14:11:40 +01:00 |
|
Miriam Baglioni
|
14bf2e7238
|
added option to split dumps bigger that 40Gb on different files
|
2020-10-30 14:09:04 +01:00 |
|
Claudio Atzori
|
58f28296ea
|
ProvisionConstants moved as ModelHardLimits in dhp-common and applied to truncate long abstracts (len > 150000). Further filtering for empty PID values
|
2020-10-30 10:56:42 +01:00 |
|
Miriam Baglioni
|
78fdb11c3f
|
merge branch with master
|
2020-10-29 12:55:22 +01:00 |
|
Sandro La Bruzzo
|
1d9fdb7367
|
fixed spark memory issue in SparkSplitOafTODLIEntities
|
2020-10-28 12:30:32 +01:00 |
|
Miriam Baglioni
|
d2374e3b9e
|
added code to handle cases where the funding tree is not existing
|
2020-10-27 16:15:21 +01:00 |
|
Miriam Baglioni
|
5d3012eeb4
|
changed code to dump only the programme list and not the classification list
|
2020-10-27 16:14:18 +01:00 |
|
Miriam Baglioni
|
3241ec1777
|
added connection timeout and socket timeout 600 sec
|
2020-10-27 16:12:11 +01:00 |
|
Alessia Bardi
|
1425d810a8
|
testing mapping
|
2020-10-19 17:46:14 +02:00 |
|
Claudio Atzori
|
266bf1a221
|
common IdentifierFactory in use on the mapping from the aggregator data; merge the entities sharing the same id; code formatting
|
2020-10-16 17:02:10 +02:00 |
|
Claudio Atzori
|
34f1d0904b
|
common IdentifierFactory in use on the mapping from the aggregator data
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2020-10-16 16:00:19 +02:00 |
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Sandro La Bruzzo
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fed711da80
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Merge remote-tracking branch 'origin/master' into merge_record_to_common
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2020-10-13 15:32:45 +02:00 |
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Alessia Bardi
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8775a64bc1
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Merge pull request 'Merging different compatibility levels (pinocchio operator)' (#47) from merge_graph into master
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2020-10-09 14:44:52 +02:00 |
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Claudio Atzori
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e751c1402f
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Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
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2020-10-09 13:53:21 +02:00 |
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Claudio Atzori
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b961dc7d1e
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added originalid to the fields in the result graph view
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2020-10-09 13:53:15 +02:00 |