Miriam Baglioni
9c8b41475a
Merge pull request '8172_impact_indicators_workflow' ( #284 ) from 8172_impact_indicators_workflow into beta
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Reviewed-on: #284
2023-08-14 15:50:48 +02:00
97c1ba8918
Merge actionsets of results and projects
2023-08-11 15:56:53 +03:00
Giambattista Bloisi
95cd2b9b1e
Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob
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Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
2023-08-10 11:53:48 +02:00
Giambattista Bloisi
fab9920271
DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag
2023-08-09 15:41:43 +02:00
Miriam Baglioni
c25ac21e5e
Merge pull request 'graph cleaning, suggestions from ticket 8898' ( #325 ) from cleaning_8898 into beta
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Reviewed-on: #325
2023-08-08 11:14:19 +02:00
Miriam Baglioni
c334fe2438
Merge pull request 'Add a "CleanRelation" action after the PropagateRelation to filter out all relations that have been deleted by inference or that are pointing to dangling entities' ( #328 ) from cleanup_relations_after_dedup into beta
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Reviewed-on: #328
2023-08-08 09:49:12 +02:00
Miriam Baglioni
0e2f855807
Merge pull request 'Updates Promotion DBs' ( #321 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #321
2023-08-07 12:09:16 +02:00
Miriam Baglioni
18fbe52b20
Merge pull request 'Import affiliation relations from Crossref' ( #320 ) from 8876 into beta
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Reviewed-on: #320
2023-08-07 10:45:30 +02:00
Giambattista Bloisi
97b6d1dc45
Filter ids by dataInfo.deletedbyinference and DataInfo.invisible flags
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Filter relations also by dataInfo.invisible flag
2023-08-07 10:24:11 +02:00
Giambattista Bloisi
af49424b59
Add a "CleanRelation" action after the PropagateRelation to filter out all relations that have been deleyted by inference or that are pointing to dangling entities
2023-08-04 14:27:39 +02:00
Claudio Atzori
11ffb9bd68
rule out records with NULL dataInfo
2023-07-31 12:35:33 +02:00
7cefe2665b
Remove unnecessary classes
2023-07-28 19:14:39 +03:00
26a92ce762
Merge branch '8876' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8876
2023-07-28 19:03:57 +03:00
ebfba38ab6
Add changes from code review
2023-07-28 19:03:47 +03:00
Serafeim Chatzopoulos
eb8684a8cf
Merge branch 'beta' into 8876
2023-07-28 13:39:33 +02:00
Claudio Atzori
a72b9e96ac
expand the instance level fulltext in the XML records
2023-07-27 14:57:38 +02:00
Claudio Atzori
270df939c4
partial implementation of the suggestions from https://support.openaire.eu/issues/8898
2023-07-25 17:29:50 +02:00
Giambattista Bloisi
e64c2854a3
Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface
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JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
2023-07-24 15:36:24 +02:00
Giambattista Bloisi
bb5b845e3c
Use scala.binary.version property to resolve scala maven dependencies
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Ensure consistent usage of maven properties
Profile for compiling with scala 2.12 and Spark 3.4
2023-07-24 11:13:48 +02:00
3a0f09774a
Add script to find score limits
2023-07-21 17:55:41 +03:00
Ilias Kanellos
06b9b71c4e
Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow
2023-07-21 17:42:49 +03:00
Ilias Kanellos
2374f445a9
Produce additional bip update specific files
2023-07-21 17:42:46 +03:00
cb0f3c50f6
Format workflow.xml
2023-07-21 16:07:10 +03:00
c64e5e588f
Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow
2023-07-21 15:27:02 +03:00
2cc5b1a39b
Fixes in workflow.xml
2023-07-21 15:26:50 +03:00
Ilias Kanellos
0f96af5d56
Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow
2023-07-21 13:42:35 +03:00
Ilias Kanellos
03da965162
Format bip-score based file without doi references
2023-07-21 13:42:30 +03:00
Giambattista Bloisi
f03153823a
Update testCitationRelations number of expected citations according to changes made in 0559d8b4 (monodirectional citations)
2023-07-21 10:48:28 +02:00
Giambattista Bloisi
54c1eacef1
SparkJobTest was failing because testing workingdir was not cleaned up after eact test
2023-07-21 10:42:24 +02:00
Giambattista Bloisi
5e15f20e6e
Fix entityMerger that was excluding the authors of the first entity in the list to merge
2023-07-21 00:46:54 +02:00
Giambattista Bloisi
0210a14e43
Ignore timestamp differences in PromoteActionPayloadForGraphTableJobTest
2023-07-20 23:45:57 +02:00
Giambattista Bloisi
dba34505de
Fix SparkStatsTest bug where parquet tables were incorrectly read as text files leading to unpredictable count() values
2023-07-19 14:24:52 +02:00
Giambattista Bloisi
e47ed1fdb2
Use DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES in json mapper to avoid that tests fail if they encounter unmapped properties
2023-07-19 14:21:40 +02:00
db4ca43ee8
Resolve conflict
2023-07-18 18:38:26 +03:00
be320ba3c1
Indentation fixes
2023-07-17 16:04:21 +03:00
be4856ef35
Update step15.sql
2023-07-17 15:33:58 +03:00
bc1a4611aa
Minor changes
2023-07-17 11:17:53 +03:00
163b2ee2a8
Changes
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1. Monitor updates
2. Bug fixes during copy to impala cluster
2023-07-13 15:25:00 +03:00
76901a25f9
Updates Promotion DBs
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- Add a step for promoting the splitted monitor DBs
2023-07-12 22:49:08 +03:00
4eba14a80e
Add oozie workflow
2023-07-06 21:07:50 +03:00
c2998a14e8
Add basic tests for affiliation relations
2023-07-06 20:28:16 +03:00
bc7b00bcd1
Add bi-directional affiliation relations
2023-07-06 18:29:15 +03:00
12528ed2ef
Refactor PrepareAffiliationRelations.java to use OafMapperUtils common functions
2023-07-06 18:08:33 +03:00
bbc245696e
Prepare actionsets for BIP affiliations
2023-07-06 15:56:12 +03:00
Ilias Kanellos
0c433eccdd
Fix scores & Workflow
2023-07-06 15:06:28 +03:00
Ilias Kanellos
d5c39a1059
Fix map scores to doi
2023-07-06 15:04:48 +03:00
Ilias Kanellos
772d5f0aab
Make PR and AttRank serial
2023-07-06 13:47:51 +03:00
Giambattista Bloisi
801da2fd4a
New sources formatted by maven plugin
2023-07-06 10:28:53 +02:00
Giambattista Bloisi
bd3fcf869a
rename dnet-pace-core into dhp-pace-core module and use it as dependency in other modules
2023-07-06 10:02:23 +02:00
347a889b20
Read affiliation relations
2023-07-06 00:51:01 +03:00
Miriam Baglioni
7738372125
[UsageCount] fixed typo in attribute name for datasource table
2023-06-30 18:56:41 +02:00
9963fd6d29
updated log to add subentity
2023-06-28 13:36:05 +02:00
ed7e2ab6d1
reverted mistake on commit workflow.xml
2023-06-28 11:40:19 +02:00
9910ce06ae
added to CreateSimRel the feature to write time log
2023-06-28 11:38:16 +02:00
Miriam Baglioni
2717edafb7
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-06-28 11:25:14 +02:00
Miriam Baglioni
2f04c9d149
[BulkTagging] fixing left over for test
2023-06-28 11:24:42 +02:00
bd17c3edc8
added to CreateSimRel the feature to write time log
2023-06-28 11:20:58 +02:00
60f25b780d
Minor fixes in workflow.xml and job.properties
2023-06-23 12:51:50 +03:00
Michele Artini
88a1cbc37d
fixed a datasource id
2023-06-22 07:56:33 +02:00
Claudio Atzori
b0ebf56367
Merge pull request 'Update step15_5.sql' ( #314 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #314
2023-06-21 10:33:22 +02:00
2b6370eaee
Update step15_5.sql
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Bug fix
2023-06-21 11:31:10 +03:00
Claudio Atzori
35e42a86ed
Merge pull request 'Update step15_5.sql' ( #313 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #313
2023-06-21 10:26:16 +02:00
74cb060bfe
Update step15_5.sql
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Add "if not exists" clause
2023-06-21 11:24:06 +03:00
Claudio Atzori
85e016df17
Merge pull request 'Update step16-createIndicatorsTables.sql' ( #312 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #312
2023-06-21 09:52:33 +02:00
a475cfcb7b
Update step16-createIndicatorsTables.sql
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Rename a field in indi_pub_interdisciplinarity
2023-06-21 10:42:02 +03:00
Claudio Atzori
979cf9cd87
Merge pull request 'Update step15.sql' ( #311 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #311
2023-06-21 09:20:01 +02:00
4648cd88d4
Update step15.sql
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Cast score to double
2023-06-21 10:02:19 +03:00
94d2573c77
Update step15.sql
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Bug Fix
2023-06-21 09:22:39 +03:00
Claudio Atzori
0561362de2
Merge pull request 'Update step20-createMonitorDB_institutions.sql' ( #309 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #309
2023-06-20 15:07:09 +02:00
Claudio Atzori
50d7dc0078
[graph enrichment] fixed projectOrganizationPath not being passed to the apply_resulttoorganization_propagation node
2023-06-19 15:42:44 +02:00
Claudio Atzori
fbd9bf704e
indent
2023-06-19 15:41:22 +02:00
be2caedb04
Update step20-createMonitorDB_institutions.sql
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Add openorgs____::1624ff7c01bb641b91f4518539a0c28a Vrije Universiteit Amsterdam
2023-06-19 12:12:17 +03:00
36e0a8fec4
Changes to Promotion Stats WF
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1. Add new cluster host at impala-shell commands
2. Add a step for splitting monitor dbs
3. Update workflow.xml to included the new splitting monitor dbs step
2023-06-19 09:44:34 +03:00
4c770a5e29
Update finalizeImpalaCluster.sh
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Drop views in shadow dbs before dropping the db
2023-06-15 13:25:37 +03:00
e06d962a6a
Update step15.sql
2023-06-15 12:20:35 +03:00
afcad08396
Update step20-createMonitorDB_institutions.sql
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Added openorgs____::c0b262bd6eab819e4c994914f9c010e2 -- National Institute of Geophysics and Volcanology
2023-06-15 10:28:49 +03:00
Claudio Atzori
b9748763e2
Merge pull request '[stats wf] Bug fixes' ( #308 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #308
2023-06-14 21:57:03 +02:00
42b8ce2ba4
Update copyDataToImpalaCluster.sh
2023-06-14 19:23:42 +03:00
2032b0df40
Bug fixes
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1. Remove tables/views from old databases in the new cluster, before dropping the dbs
2. Fix id in result_accessroute, indi_impact_measures, indi_pub_bronze_oa
2023-06-14 19:09:09 +03:00
Claudio Atzori
b76a47b103
[aggregator graph] added column alias when mapping organization PIDs from the OpenOrgs database
2023-06-13 11:38:10 +02:00
Claudio Atzori
ad04f14b81
Merge branch 'beta' into distinct_pids_from_openorgs_beta
2023-06-12 09:58:21 +02:00
Claudio Atzori
55f002f1e9
Merge branch 'beta' into propagationProjectThroughParentChils
2023-06-12 09:56:53 +02:00
Claudio Atzori
4b00a76271
Merge branch 'beta' into fulltext_url_validation
2023-06-12 09:55:25 +02:00
Claudio Atzori
de225c71cd
Merge branch 'beta' into removeTaggingCondition
2023-06-12 09:50:40 +02:00
Claudio Atzori
e1409ffe80
update sql query to return distinct pids
2023-06-12 09:47:45 +02:00
Claudio Atzori
da7b66c542
Merge pull request '[stats wf] Added memory to hive' ( #305 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #305
2023-06-08 08:58:48 +02:00
c5f42c7f5b
Added memory to hive
2023-06-07 18:18:23 +03:00
Claudio Atzori
afb76ebf0f
Merge pull request '[stats wf] Bug fix on indicators step' ( #304 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #304
2023-06-07 16:49:09 +02:00
fa24e2e18f
Bug fix on indicators step
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indi_pub_gold_oa table was missing during the creation of other indicators
2023-06-07 17:43:37 +03:00
Claudio Atzori
01c67e697d
Merge pull request '[ stats wf] Bug fix' ( #303 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #303
2023-06-07 14:41:44 +02:00
28272c1b0e
Bug fix
2023-06-07 15:34:01 +03:00
Alessia Bardi
d5be6a13e9
Updated officialnmae of pangaea in hostedbymap for Datacite to avoid duplicate entries in the source filter of the portal
2023-06-06 14:43:32 +02:00
Claudio Atzori
8f651f1225
Merge pull request 'Changes to beta stats wf' ( #300 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #300
2023-06-06 11:41:36 +02:00
ad07fbf053
Add names to organizations for collaboration indicators
2023-06-02 14:13:10 +03:00
2324670714
Split Monitor DBs-Interdisciplinarity indicators
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- Split DBs Monitor for faster rendering of visualizations
- Add interdisciplinarity indicators from result_fos
2023-06-02 13:34:16 +03:00
Miriam Baglioni
daf4d7971b
refactoring
2023-05-31 18:56:58 +02:00
Miriam Baglioni
97d72d41c3
finalization of implementation and testing
2023-05-31 18:53:22 +02:00
Miriam Baglioni
0389b57ca7
added propagation for project to organization
2023-05-31 11:06:58 +02:00
Claudio Atzori
e45777e7e1
[aggregator graph] added validation for URLs mapped from oaf:fulltext
2023-05-26 11:33:42 +02:00
ebe586b1d1
Impact indicators/Unpaywall
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- Added Impact indicators
- Added unpaywall open access colours
2023-05-26 10:25:28 +03:00
d6102dd576
Update step16-createIndicatorsTables.sql
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- Add org names to indi_project_collab_org
- Add indi_pub_bronze_oa
- Changes to indi_pub_hybrid_oa_with_cc
2023-05-25 14:52:34 +03:00
Miriam Baglioni
9097e71853
Added assertion in test
2023-05-24 16:30:53 +02:00
Miriam Baglioni
9567c13bc3
refactoring
2023-05-24 16:20:05 +02:00
Miriam Baglioni
34172455d1
[BulkTag] Adding remove constraints to specify when a community must not appear in the context of a result.
2023-05-24 09:56:23 +02:00
Ilias Kanellos
a1b9187039
Fix syntax error on workflow.xml
2023-05-23 17:17:12 +03:00
Ilias Kanellos
6a7e370a21
Remove unnecessary counts in graph creation
2023-05-23 16:48:58 +03:00
Ilias Kanellos
ec4e010687
End after rankings | Create graph debugged
2023-05-23 16:44:04 +03:00
Claudio Atzori
a235d2a24a
Merge pull request 'Updates to steps related to transfer data to impala cluster' ( #295 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #295
2023-05-18 08:46:15 +02:00
86f4f63daf
Updates to steps related to transfer data to impala cluster
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1. Remove external table definitions in stats_ext
2. Fix the issue where some views are not created.
3. Added two workflow parameters for copying also the usage stats dbs
2023-05-18 09:33:05 +03:00
Claudio Atzori
909729a2fc
[dedup] tweaking num partitions, minor changes
2023-05-17 10:16:22 +02:00
Ilias Kanellos
38020e242a
Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow
2023-05-16 17:34:53 +03:00
Ilias Kanellos
3d69f33c84
Fix selection of columns in graph creation
2023-05-16 17:34:42 +03:00
Ilias Kanellos
3c38f7ba6f
Fix selection of columns in graph creation
2023-05-16 17:32:53 +03:00
8ef718c363
Fix workflow application path
2023-05-16 16:28:48 +03:00
26328e2a0d
Move job.properties
2023-05-16 14:39:53 +03:00
4eec3e7052
Add jobTracker, nameNode && spark2Lib as global params in oozie wf
2023-05-15 22:28:48 +03:00
b83135c252
Add missing kill nodes in workflow.xml
2023-05-15 19:55:35 +03:00
45f2aa0867
Move end node ... at the end in workflow.xml
2023-05-15 17:52:20 +03:00
Claudio Atzori
8acad52a0c
Merge branch 'beta' into apc_affiliation
2023-05-15 15:47:33 +02:00
Claudio Atzori
8a463cc3e8
fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common
2023-05-15 15:44:46 +02:00
12a57e1f58
Resolve conflicts
2023-05-15 16:20:11 +03:00
82e2a96f51
Resolve conflicts
2023-05-15 15:53:12 +03:00
b8e8c959fe
Update workflow.xml && job.properties
2023-05-15 15:50:23 +03:00
Ilias Kanellos
4a905932a3
Spark properties from job.properties
2023-05-15 15:24:22 +03:00
Claudio Atzori
0c314d5e09
Merge pull request 'Update copyDataToImpalaCluster.sh' ( #293 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #293
2023-05-15 12:05:54 +02:00
07818131ef
Update documentation
2023-05-15 13:04:44 +03:00
b3f9633205
Update copyDataToImpalaCluster.sh
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Added option --user to impala-shell command
2023-05-15 12:51:44 +03:00
Miriam Baglioni
78b07400c0
changed test classes
2023-05-15 11:37:08 +02:00
Miriam Baglioni
86fe886c1a
removed the inverse of the Citing relation
2023-05-15 11:20:51 +02:00
Ilias Kanellos
1788ac2d4d
Correct filtering for MAG records
2023-05-12 12:55:43 +03:00
Miriam Baglioni
12cd179d2d
Merge pull request 'Update copyDataToImpalaCluster.sh' ( #291 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #291
2023-05-12 11:36:34 +02:00
00d0d162b6
Update copyDataToImpalaCluster.sh
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Added a temporary folder to copy the files to avoid permission issues
2023-05-12 12:31:13 +03:00
Ilias Kanellos
5ddbb4ad10
Spark properties no longer hardcoded
2023-05-11 15:36:47 +03:00
Ilias Kanellos
3de35fd6a3
Produce 5 classes of ranking scores
2023-05-11 14:42:25 +03:00
Miriam Baglioni
8c05f49665
moved the version as it was before the change
2023-05-09 10:48:34 +02:00
Miriam Baglioni
99ac5bab46
added check to avoid NPE when checking the organization country
2023-05-04 19:38:39 +02:00
Claudio Atzori
0704e186f6
Merge pull request 'Stats wf executed on hive only' ( #283 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #283
2023-05-02 14:05:12 +02:00
Claudio Atzori
d8882c4481
extended mapping applied to datacite records to produce affiliations using the ROR ids. Inc ase of APCs it includes the amount and the currently in the relation
2023-05-02 11:56:51 +02:00
c3d58e58e1
Bug fixes
2023-05-02 11:54:07 +03:00
Claudio Atzori
abd7ca0c18
Merge branch 'beta' into bulkTagRefactor
2023-05-02 10:50:01 +02:00
Claudio Atzori
45f625d14f
Merge branch 'beta' into organizationToRepresentative
2023-05-02 10:46:55 +02:00
Claudio Atzori
de11edca98
Merge branch 'beta' into organizationToRepresentative
2023-05-02 09:59:41 +02:00
Claudio Atzori
851f664bd9
Merge branch 'beta' into graph_cleaning_refactoring
2023-05-02 09:55:40 +02:00
e57ecdaf98
Update step20-createMonitorDB.sql
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Add University of Manitoba
2023-04-30 17:52:23 +03:00
Ilias Kanellos
90332439ad
Remove deletion of synonym folder
2023-04-28 13:45:19 +03:00
Ilias Kanellos
a98da54896
Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow
2023-04-28 13:23:49 +03:00
Ilias Kanellos
09485fbee3
Fixed unicode bug. Workflow ends after first script
2023-04-28 13:09:13 +03:00
614cc1089b
Add separate forder for results && project actionsets
2023-04-27 12:37:15 +03:00
815a4ddbba
Add actionset creation for project bip indicators in workflow
2023-04-26 20:40:06 +03:00
ee04cf92bf
Add actionsets for project impact indicators
2023-04-26 20:23:46 +03:00
fdb5d2b39f
Bug fixes
2023-04-23 18:29:00 +03:00
53ce023035
Bug fixes
2023-04-23 18:23:45 +03:00
4fa750b719
Bug fixes on monitor-update
2023-04-19 17:39:53 +03:00
5247cb7115
Bug fix
2023-04-19 11:11:19 +03:00
Miriam Baglioni
efc4f6a658
[bulkTag] refactor to enrich each result single step
2023-04-18 17:39:31 +02:00
23f58a86f1
Change jar param in project impact indicators action
2023-04-18 12:26:01 +03:00
Miriam Baglioni
697a134504
-
2023-04-18 10:21:12 +02:00
Miriam Baglioni
6cc95c96a2
-
2023-04-18 09:53:11 +02:00
25dafccc24
Merge branch 'hive' into beta
2023-04-12 11:36:59 +03:00
Claudio Atzori
a2dcb06daf
added eoscifguidelines in the result view; removed compute statistics statements
2023-04-11 10:43:32 +02:00
7256c8d3c7
Add script for aggregating impact indicators at the project level
2023-04-07 16:30:12 +03:00
c85de8fa1f
-Added Technological University Dublin
...
-Added project_organization_contribution table
-Add Delft University of Technology
2023-04-07 09:22:59 +03:00
9b41dff33c
Update step20-createMonitorDB.sql
...
Added Delft University of Technology
2023-04-07 09:21:38 +03:00
Miriam Baglioni
932d07d2dd
[bulkTag] added filtering for datasources in eosctag
2023-04-06 15:08:27 +02:00
Miriam Baglioni
287753417d
better implementation for the fix
2023-04-06 12:22:38 +02:00
Miriam Baglioni
b42abc9904
fixed issue on bulktagging for the advanced constraints
2023-04-06 12:15:00 +02:00
91e18ac7f4
Added project_organization_contribution table
2023-04-06 10:53:11 +03:00
Miriam Baglioni
b25b401065
added test to verify the advconstraints to dth community. inserted some additional logs.
2023-04-05 12:18:39 +02:00
Claudio Atzori
864f4051d3
[graph cleaning] added missing case
2023-04-05 11:35:47 +02:00
Claudio Atzori
dead87917f
[graph cleaning] cleanup
2023-04-04 13:13:43 +02:00
Claudio Atzori
2a6ba29b64
[graph cleaning] unit tests & cleanup
2023-04-04 12:34:51 +02:00
9e1335df4c
-Added Technological University Dublin
...
-Added project_organization_contribution table
2023-04-04 13:22:40 +03:00
Claudio Atzori
63b8bbc015
[graph to Solr] using dedicated sparkExecutorCores, sparkExecutorMemory, sparkDriverMemory in convert_to_xml
2023-03-24 13:43:20 +01:00
Claudio Atzori
b502f86523
fixed input path supplemented to GetDatasourceFromCountry; adjusted the various spark.sql.shuffle.partitions
2023-03-24 13:09:12 +01:00
Claudio Atzori
c07857fa37
[graph cleaning] unit tests & cleanup
2023-03-23 15:57:47 +01:00
Claudio Atzori
90e61a8aba
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-23 15:03:26 +01:00
Claudio Atzori
308e10d102
serialising: 1. measures for all the entity types and 2. result level fulltext
2023-03-23 11:23:22 +01:00
Claudio Atzori
488d9a5eaa
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-23 10:41:13 +01:00
fad7fa4af8
Added Technological University Dublin
2023-03-22 09:44:00 +02:00
102aa5ab81
Add dependency to dhp-aggregation
2023-03-21 19:25:29 +02:00
3e8a4cf952
Rearrange resources folder structure
2023-03-21 18:25:55 +02:00
f992ecb657
Checkout BIP-Ranker during 'prepare-package' && add it in the oozie-package.tar.gz
2023-03-21 18:03:55 +02:00
Ilias Kanellos
9dc8f0f05f
Add ActionSet step
2023-03-21 16:14:15 +02:00
Claudio Atzori
4f5ba0ed52
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-21 14:41:20 +01:00
Ilias Kanellos
b5c252865c
Add filtering based on citation source
2023-03-20 15:38:36 +02:00
Claudio Atzori
6d3d18d8b5
[graph cleaning] WIP: refactoring of the cleaning stages
2023-03-16 17:23:36 +01:00
43b23a9bf3
Update step20-createMonitorDB.sql
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Added Technological University Dublin
2023-03-15 09:57:12 +02:00
720fd19b39
Add dhp-impact-indicators workflow files
2023-03-14 19:28:27 +02:00
c6e39b7f33
Add dhp-impact-indicators
2023-03-14 18:50:54 +02:00
Claudio Atzori
518618f1a9
[graph cleaning] avoid to overwrite the subject class to 'keyword' for those with provenance 'subject:fos'
2023-03-14 15:22:47 +01:00
Claudio Atzori
41e00bcd07
[graph provision] avoid to parse again the XML records, apparently the escaped XML characters get unescaped invalidating the record
2023-03-13 15:19:49 +01:00
Claudio Atzori
24e2fd828b
code formatting
2023-03-08 21:17:08 +01:00
Claudio Atzori
e28d395e87
[aggregator graph] using dedicated path to sync claims, adjusted paths with wildcards
2023-03-08 21:16:52 +01:00
Claudio Atzori
5b8fd37314
[aggregator graph] using dedicated path to sync claims
2023-03-08 15:28:14 +01:00
Claudio Atzori
7fd89566c2
[aggregator graph] handle paths including wildcards
2023-03-08 12:43:00 +01:00
Miriam Baglioni
588aca5ce4
Merge pull request 'h2020classification' ( #280 ) from h2020classification into beta
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Reviewed-on: #280
2023-03-03 09:29:10 +01:00
Claudio Atzori
8ec0d62d91
pre-group the records in each table before joning the contents from BETA and PROD together
2023-03-02 14:49:19 +01:00
Miriam Baglioni
0fff98a14c
[ECclassification] removed print
2023-03-02 11:46:57 +01:00
Miriam Baglioni
b0c2f7e526
[ECclassification] removed not needed resources
2023-03-02 11:44:48 +01:00
Miriam Baglioni
d4fc62c2f6
mergin with branch beta
2023-03-02 11:14:54 +01:00
Miriam Baglioni
de8ad1caef
[ECclassification] new implementation for the H2020 classification
2023-03-02 11:14:03 +01:00
Claudio Atzori
db9dad4aa7
[actionmanager] increased spark.sql.shuffle.partitions for publication, dataset, relation records
2023-03-02 09:11:37 +01:00
Miriam Baglioni
c1f9848953
[ECclassification] added new classes
2023-03-01 15:29:11 +01:00
Claudio Atzori
6f488547a7
ignore non processable records
2023-03-01 14:49:51 +01:00
Claudio Atzori
7d263f265e
adjusted logs
2023-03-01 11:58:07 +01:00
Claudio Atzori
16ad42e8f3
code formatting
2023-03-01 10:22:13 +01:00
Claudio Atzori
9c59dac859
followup changes reorganising the mdstore synchronisation mechanism
2023-03-01 10:16:20 +01:00
Miriam Baglioni
ad745c0aa3
[CrossrefFunderMapping] fixed issueson funder name
2023-02-28 14:58:27 +01:00
Miriam Baglioni
4f2df876cd
[ECclassification] new implementation first try
2023-02-28 14:44:00 +01:00
Claudio Atzori
2f7346e9cf
WIP monodirectional citations, Datacite
2023-02-28 13:30:51 +01:00
Claudio Atzori
0559d8b412
WIP monodirectional citations
2023-02-28 10:57:32 +01:00
69fa616490
removed wrong content
2023-02-28 10:27:38 +01:00
832a75d012
added mapping for crossref funder
2023-02-28 10:16:34 +01:00
78e51c182a
Added missing parametero to raw all workflow
2023-02-28 10:16:01 +01:00
Claudio Atzori
7aebedb43c
code formatting
2023-02-27 11:51:27 +01:00
Miriam Baglioni
80987801d7
[FoS] added check for null on level1 subject
2023-02-27 11:40:22 +01:00
Claudio Atzori
31e97c2a6b
[unresolved entities] updated oozie wf node labels
2023-02-27 11:38:29 +01:00
Miriam Baglioni
23112929e9
[FoS] changed the default separator from comma to tab to solve the issue in subject value split
2023-02-27 10:18:39 +01:00
0b5bf53b45
Remove unecessary indexed fields from Solr
2023-02-23 12:42:42 +02:00
1547611246
Merge branch 'beta' into hive
2023-02-22 16:57:12 +02:00
Michele Artini
fddcf701e9
updated the order of the compatibilities
2023-02-22 12:07:09 +01:00
Claudio Atzori
0c1be41b30
code formatting
2023-02-22 10:15:25 +01:00
Claudio Atzori
99cd7761aa
cleanup of non necessary dhp-monitor-update workflow
2023-02-22 10:10:22 +01:00
Claudio Atzori
cd3a51a15f
Merge branch 'beta' into 8232-mdstore-synch-improve
2023-02-22 09:57:07 +01:00
Claudio Atzori
477a7c416f
Merge branch 'beta' into UsageCountOnProjectAndDatasource
2023-02-22 09:55:51 +01:00
Claudio Atzori
c20c1c9159
Merge pull request 'Added 4 institutions:' ( #261 ) from antonis.lempesis/dnet-hadoop:beta into beta
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Reviewed-on: #261
2023-02-22 09:53:45 +01:00
Miriam Baglioni
d617c3e812
[DOIBoost] extended mapping for funder #8407
2023-02-20 14:45:27 +01:00
90807b60c7
Changes to monitor wf
2023-02-20 10:42:24 +02:00
d2f9ccf934
Changes to separate monitor wf
2023-02-20 10:41:21 +02:00
032a401cbf
Bug fixes
2023-02-20 09:29:20 +02:00
Miriam Baglioni
016337a0f9
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-02-16 15:54:59 +01:00
118c1fc3b3
Merge remote-tracking branch 'origin/beta' into beta
2023-02-15 10:29:28 +01:00
a8ac79fa25
Added citation relation on crossref Mapping
2023-02-15 10:29:13 +01:00
595192d510
Bug fix
2023-02-14 16:24:08 +02:00
f3aaff3688
Remove duplicate orgs
2023-02-14 09:48:36 +02:00
Claudio Atzori
9a03f71db1
code formatting
2023-02-13 16:25:47 +01:00
Michele Artini
554df257ab
null values in date range conditions
2023-02-13 16:15:32 +01:00
3400133c2f
Bug fix
2023-02-13 09:44:00 +02:00
935db0ab25
Added organizations for Monitor
2023-02-13 09:29:09 +02:00
7b78b15c81
Changes for copying to Impala Cluster
2023-02-13 09:27:00 +02:00
Miriam Baglioni
5cf902a2b0
[UsageCount] changed query to make the sum be computed via sql instead of grouping
2023-02-10 16:16:37 +01:00
Miriam Baglioni
f803530df6
[UsageCount] fixed query
2023-02-10 15:50:56 +01:00
Miriam Baglioni
bb5bba51b3
[UsageCount] extended test
2023-02-09 19:08:30 +01:00
Miriam Baglioni
85e53fad00
[UsageCount] addition of usagecount for Projects and datasources. Extention of the action set created for the results with new entities for projects and datasources. Extention of the resource set and modification of the testing class
2023-02-09 18:59:45 +01:00
d71f5672d3
Add monitor post step
2023-02-09 13:44:14 +02:00
35ba8bb328
Bug fixes
2023-02-09 12:57:57 +02:00
8920932dd8
Code formatted
2023-02-08 11:34:18 +01:00
0b9819f1ab
Code formatted
2023-02-08 10:32:33 +01:00
6c81a161d2
Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve
2023-02-08 10:29:09 +01:00
3ba11d64a1
Changes 07022023
2023-02-07 12:53:51 +02:00
98c34263ed
Update step20-createMonitorDB.sql
...
Add University of Cape Town organization
2023-02-07 08:14:48 +02:00
2dc6d47270
Changes 06022023
2023-02-06 13:18:53 +02:00
973d78a4d6
Update step15_5.sql
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Added unpaywalls open access colors
2023-02-02 08:03:54 +02:00
Claudio Atzori
d05ca53a14
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-01-31 14:39:53 +01:00
Miriam Baglioni
e82e009b46
added missing close tag for XML produced by the xquery to get information for the community from the IS
2023-01-31 10:19:34 +01:00
Miriam Baglioni
b254a0375f
[Affiliation from institutionalrepo] changed the field to check to verify the datasource type. Now it is in the field jurisdiction
2023-01-26 16:51:20 +01:00
cf58e4a5e4
Added Arts et Métiers ParisTech
2023-01-25 16:03:16 +02:00
db7d625ba9
Addedd Arts et Métiers ParisTech organization
2023-01-25 12:22:21 +02:00
Claudio Atzori
505867bce9
[bulk tagging] better node naming
2023-01-20 16:13:16 +01:00
Miriam Baglioni
ecd398fe51
refactoring
2023-01-20 14:23:45 +01:00
Miriam Baglioni
0a5c6010b0
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-01-13 16:14:46 +01:00
4d7553c9f1
Bug fixes
2023-01-12 17:19:19 +02:00
dd70c32ad7
Bug fixes
2023-01-12 17:18:05 +02:00
51f7ab5864
Bug fixes
2023-01-12 17:15:06 +02:00
34d4bf727c
Bug fixes
2023-01-12 11:28:37 +02:00
43f6d4f296
-Monitor DB workflow
2023-01-12 11:26:47 +02:00
686580a220
- New Monitor DB workflow
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- New Organization added
2023-01-12 11:18:03 +02:00
Claudio Atzori
0a58bc7ba7
[broker] prevent NPEs
2023-01-11 14:44:14 +01:00
Claudio Atzori
04cb96001c
[broker] d40e20f437 adapted to the beta graph model
2023-01-11 10:10:12 +01:00
Michele Artini
91b845f611
Considering instance pids and alteternative identifiers
2023-01-11 09:58:54 +01:00
Miriam Baglioni
1f367122e4
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-01-11 09:47:44 +01:00
Michele Artini
7b7520850b
fixed an invalid char
2023-01-11 09:22:18 +01:00
Miriam Baglioni
d6895f0387
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-01-09 17:28:38 +01:00
becb242c17
Monitor DB only Workflow
2023-01-04 16:50:29 +02:00
dcb958e146
Changes to execute the stats wf only in hive
2023-01-04 11:39:01 +02:00
592013d5dd
Added more steps in decision node
2022-12-23 09:43:16 +02:00
2a4bf32d4c
Merge branch 'hive' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into hive
...
# Conflicts:
# dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
# dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
# dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
# dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
# dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
2022-12-22 10:22:46 +02:00
6449ff4207
1. Added a decision node to enables the workflow to make a selection on the execution path to follow
...
2. Added new organization
3. Added 5 new tables from Eurostast
2022-12-22 10:18:21 +02:00
Miriam Baglioni
8893389895
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2022-12-21 12:42:27 +01:00
Antonis Lempesis
c8309fe18e
addded command line params to allow hive actions to run
2022-12-21 12:41:33 +02:00
Antonis Lempesis
028873cc51
added new hive opts
2022-12-21 12:41:33 +02:00
Antonis Lempesis
1ddea4f442
removed 'stored as parquet' from views..
2022-12-21 12:41:33 +02:00
Antonis Lempesis
2754c3dd62
moving data to impala cluster and creating shadow databases there
2022-12-21 12:41:29 +02:00
Antonis Lempesis
778a1a724f
finished migration to hive only
2022-12-21 12:41:25 +02:00
Antonis Lempesis
e84dd5fe26
first
2022-12-21 12:41:23 +02:00
3c9826f186
updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline
2022-12-21 11:21:17 +01:00
Claudio Atzori
6aa91204a5
[orcid propagation] skip empty directories
2022-12-20 14:15:46 +01:00
Miriam Baglioni
6674cccb94
[BulkTag] description of parameters more comprehensive for those who do not implement it
2022-12-16 15:33:20 +01:00
Miriam Baglioni
f37113a941
[BulkTag] moving xquery to get community configuration in dedicated file
2022-12-16 15:32:26 +01:00
Miriam Baglioni
8685eaa706
[Clean Country] added test to verify remove of country
2022-12-16 15:31:25 +01:00
Miriam Baglioni
dc0ec88a58
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2022-12-16 13:18:32 +01:00
Miriam Baglioni
d791840b82
[Clean Country] added test to verify remove of country:
2022-12-16 13:18:29 +01:00
Claudio Atzori
7b80b24f82
[cleaning] country cleaning must use both PID and AlternateIdentifier fields
2022-12-15 14:49:04 +01:00
Claudio Atzori
b8bafab8a0
[cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning
2022-12-12 14:43:03 +01:00
5e4866d033
implemented synch for single mdstore
2022-12-12 11:29:46 +01:00
Claudio Atzori
c18b8048c3
[cleaning] avoid NPE
2022-12-10 11:41:38 +01:00
Claudio Atzori
8b44afe5e5
[cleaning] avoid NPE
2022-12-09 15:44:57 +01:00
Claudio Atzori
389dd25430
[cleaning] avoid NPE
2022-12-08 18:40:48 +01:00
Claudio Atzori
730228d73d
[cleaning] align wf parameter names in test
2022-12-08 18:40:22 +01:00
Claudio Atzori
2094fa6db0
[cleaning] align wf parameter names
2022-12-08 17:22:26 +01:00
Miriam Baglioni
Serafeim Chatzopoulos
Giambattista Bloisi
Claudio Atzori
Serafeim Chatzopoulos
Ilias Kanellos
dimitrispie
Sandro La Bruzzo
Michele Artini
Alessia Bardi
Antonis Lempesis