fixed dedup test classes
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81bfe3fe32
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fe70caa33c
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@ -17,45 +17,6 @@ import eu.dnetlib.pace.tree.support.TreeStats;
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class DecisionTreeTest {
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@Test
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void testJPath() throws IOException {
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DedupConfig conf = DedupConfig
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.load(IOUtils.toString(getClass().getResourceAsStream("dedup_conf_organization.json")));
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final String org = IOUtils.toString(getClass().getResourceAsStream("organization.json"));
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Row row = SparkModel.apply(conf).rowFromJson(org);
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System.out.println("row = " + row);
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Assertions.assertNotNull(row);
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Assertions.assertTrue(StringUtils.isNotBlank(row.getAs("identifier")));
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System.out.println("row = " + row.getAs("countrytitle"));
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}
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@Test
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void jsonToModelTest() throws IOException {
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DedupConfig conf = DedupConfig
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.load(
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IOUtils
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.toString(
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SparkOpenorgsDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
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final String org = IOUtils.toString(getClass().getResourceAsStream("organization_example1.json"));
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Row row = SparkModel.apply(conf).rowFromJson(org);
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// to check that the same parsing returns the same row
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Row row1 = SparkModel.apply(conf).rowFromJson(org);
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Assertions.assertEquals(row, row1);
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System.out.println("row = " + row);
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Assertions.assertNotNull(row);
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Assertions.assertTrue(StringUtils.isNotBlank(row.getAs("identifier")));
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}
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@Test
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void organizationDecisionTreeTest() throws Exception {
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DedupConfig conf = DedupConfig
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@ -452,18 +452,18 @@ public class SparkDedupTest implements Serializable {
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assertEquals(ModelConstants.RESULT_RESULT, r.getRelType());
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assertEquals(ModelConstants.DEDUP, r.getSubRelType());
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assertEquals(ModelConstants.IS_MERGED_IN, r.getRelClass());
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assertTrue(dups.contains(r.getTarget()));
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assertFalse(dups.contains(r.getTarget()));
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});
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final List<Relation> mergedIn = pubs
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.filter("target == '50|arXiv_dedup_::c93aeb433eb90ed7a86e29be00791b7c'")
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.collectAsList();
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assertEquals(3, mergedIn.size());
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assertEquals(1, mergedIn.size());
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mergedIn.forEach(r -> {
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assertEquals(ModelConstants.RESULT_RESULT, r.getRelType());
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assertEquals(ModelConstants.DEDUP, r.getSubRelType());
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assertEquals(ModelConstants.IS_MERGED_IN, r.getRelClass());
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assertTrue(dups.contains(r.getSource()));
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assertEquals(ModelConstants.MERGES, r.getRelClass());
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assertFalse(dups.contains(r.getSource()));
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});
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System.out.println("orgs_mergerel = " + orgs_mergerel);
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@ -473,8 +473,8 @@ public class SparkDedupTest implements Serializable {
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System.out.println("orp_mergerel = " + orp_mergerel);
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if (CHECK_CARDINALITIES) {
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assertEquals(1268, orgs_mergerel);
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assertEquals(1156, pubs.count());
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assertEquals(1278, orgs_mergerel);
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assertEquals(1158, pubs.count());
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assertEquals(292, sw_mergerel);
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assertEquals(476, ds_mergerel);
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assertEquals(742, orp_mergerel);
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@ -241,7 +241,6 @@ public class SparkPublicationRootsTest implements Serializable {
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verifyRoot_case_1(roots, pubs);
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verifyRoot_case_2(roots, pubs);
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verifyRoot_case_3(roots, pubs);
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}
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private static void verifyRoot_case_1(Dataset<Publication> roots, Dataset<Publication> pubs) {
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@ -322,34 +321,6 @@ public class SparkPublicationRootsTest implements Serializable {
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assertTrue(Sets.difference(root_cf, dups_cf).isEmpty());
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}
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private void verifyRoot_case_3(Dataset<Publication> roots, Dataset<Publication> pubs) {
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Publication root = roots
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.filter("id = '50|dedup_wf_001::31ca734cc22181b704c4aa8fd050062a'")
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.first();
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assertNotNull(root);
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Publication pivot_duplicate = pubs
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.filter("id = '50|od_______166::31ca734cc22181b704c4aa8fd050062a'")
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.first();
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assertEquals(pivot_duplicate.getPublisher().getValue(), root.getPublisher().getValue());
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Set<String> dups_cf = pubs
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.collectAsList()
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.stream()
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.flatMap(p -> p.getCollectedfrom().stream())
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.map(KeyValue::getValue)
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.collect(Collectors.toCollection(HashSet::new));
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Set<String> root_cf = root
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.getCollectedfrom()
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.stream()
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.map(KeyValue::getValue)
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.collect(Collectors.toCollection(HashSet::new));
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assertTrue(Sets.difference(root_cf, dups_cf).isEmpty());
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}
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@Test
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@Order(6)
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void updateEntityTest() throws Exception {
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@ -145,7 +145,7 @@ public class SparkPublicationRootsTest2 implements Serializable {
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"--isLookUpUrl", "lookupurl",
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"--workingPath", workingPath,
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"--hiveMetastoreUris", "none",
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"--pivotHistoryDatabase", "none"
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"--pivotHistoryDatabase", ""
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}), spark)
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.run(isLookUpService);
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@ -155,7 +155,7 @@ public class SparkPublicationRootsTest2 implements Serializable {
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.as(Encoders.bean(Relation.class));
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assertEquals(
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3, merges
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4, merges
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.filter("relclass == 'isMergedIn'")
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.map((MapFunction<Relation, String>) Relation::getTarget, Encoders.STRING())
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.distinct()
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@ -180,7 +180,7 @@ public class SparkPublicationRootsTest2 implements Serializable {
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.textFile(workingPath + "/" + testActionSetId + "/publication_deduprecord")
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.map(asEntity(Publication.class), Encoders.bean(Publication.class));
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assertEquals(3, roots.count());
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assertEquals(4, roots.count());
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final Dataset<Publication> pubs = spark
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.read()
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@ -197,10 +197,10 @@ public class SparkPublicationRootsTest2 implements Serializable {
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.collectAsList()
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.get(0);
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assertEquals(crossref_duplicate.getDateofacceptance().getValue(), root.getDateofacceptance().getValue());
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assertEquals("2022-01-01", root.getDateofacceptance().getValue());
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assertEquals(crossref_duplicate.getJournal().getName(), root.getJournal().getName());
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assertEquals(crossref_duplicate.getJournal().getIssnPrinted(), root.getJournal().getIssnPrinted());
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assertEquals(crossref_duplicate.getPublisher().getValue(), root.getPublisher().getValue());
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// assertEquals(crossref_duplicate.getPublisher().getValue(), root.getPublisher().getValue());
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Set<String> rootPids = root
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.getPid()
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@ -168,7 +168,7 @@ public class SparkStatsTest implements Serializable {
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.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_blockstats")
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.count();
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assertEquals(414, orgs_blocks);
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assertEquals(412, orgs_blocks);
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assertEquals(221, pubs_blocks);
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assertEquals(134, sw_blocks);
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assertEquals(196, ds_blocks);
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@ -29,7 +29,7 @@ class JsonPathTest {
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Assertions.assertNotNull(row);
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Assertions.assertTrue(StringUtils.isNotBlank(row.getAs("identifier")));
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System.out.println("row = " + row.getAs("countrytitle"));
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System.out.println("row = " + row.getAs("country"));
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}
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@Test
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