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EOSC Services - ongoing update

This commit is contained in:
Claudio Atzori 2022-04-29 12:25:24 +02:00
parent 5ffc24d1ba
commit f5f532d134
8 changed files with 459 additions and 240 deletions
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13
dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtils.java
View File

@ -3,6 +3,8 @@ package eu.dnetlib.dhp.schema.oaf.utils;
import static eu.dnetlib.dhp.schema.common.ModelConstants.*; import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
import java.sql.Array;
import java.sql.SQLException;
import java.util.*; import java.util.*;
import java.util.concurrent.ConcurrentHashMap; import java.util.concurrent.ConcurrentHashMap;
import java.util.function.Function; import java.util.function.Function;
@ -118,6 +120,17 @@ public class OafMapperUtils {
.collect(Collectors.toList()); .collect(Collectors.toList());
} }
public static <T> List<T> listValues(Array values) throws SQLException {
if (Objects.isNull(values)) {
return null;
}
return Arrays
.stream((T[]) values.getArray())
.filter(Objects::nonNull)
.distinct()
.collect(Collectors.toList());
}
public static List<Field<String>> listFields(final DataInfo info, final List<String> values) { public static List<Field<String>> listFields(final DataInfo info, final List<String> values) {
return values return values
.stream() .stream()

185
dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtilsTest.java
View File

@ -44,105 +44,104 @@ class OafMapperUtilsTest {
@Test @Test
void testDateValidation() { void testDateValidation() {
assertTrue(GraphCleaningFunctions.doCleanDate("2016-05-07T12:41:19.202Z ").isPresent()); assertNotNull(GraphCleaningFunctions.cleanDate("2016-05-07T12:41:19.202Z "));
assertTrue(GraphCleaningFunctions.doCleanDate("2020-09-10 11:08:52 ").isPresent()); assertNotNull(GraphCleaningFunctions.cleanDate("2020-09-10 11:08:52 "));
assertTrue(GraphCleaningFunctions.doCleanDate(" 2016-04-05").isPresent()); assertNotNull(GraphCleaningFunctions.cleanDate(" 2016-04-05"));
assertEquals("2016-04-05", GraphCleaningFunctions.doCleanDate("2016 Apr 05").get()); assertEquals("2016-04-05", GraphCleaningFunctions.cleanDate("2016 Apr 05"));
assertEquals("2009-05-08", GraphCleaningFunctions.doCleanDate("May 8, 2009 5:57:51 PM").get()); assertEquals("2009-05-08", GraphCleaningFunctions.cleanDate("May 8, 2009 5:57:51 PM"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("oct 7, 1970").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("oct 7, 1970"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("oct 7, '70").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("oct 7, '70"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("oct. 7, 1970").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("oct. 7, 1970"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("oct. 7, 70").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("oct. 7, 70"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Mon Jan 2 15:04:05 2006").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Mon Jan 2 15:04:05 2006"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Mon Jan 2 15:04:05 MST 2006").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Mon Jan 2 15:04:05 MST 2006"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Mon Jan 02 15:04:05 -0700 2006").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Mon Jan 02 15:04:05 -0700 2006"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Monday, 02-Jan-06 15:04:05 MST").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Monday, 02-Jan-06 15:04:05 MST"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Mon, 02 Jan 2006 15:04:05 MST").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Mon, 02 Jan 2006 15:04:05 MST"));
assertEquals("2017-07-11", GraphCleaningFunctions.doCleanDate("Tue, 11 Jul 2017 16:28:13 +0200 (CEST)").get()); assertEquals("2017-07-11", GraphCleaningFunctions.cleanDate("Tue, 11 Jul 2017 16:28:13 +0200 (CEST)"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("Mon, 02 Jan 2006 15:04:05 -0700").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("Mon, 02 Jan 2006 15:04:05 -0700"));
assertEquals("2018-01-04", GraphCleaningFunctions.doCleanDate("Thu, 4 Jan 2018 17:53:36 +0000").get()); assertEquals("2018-01-04", GraphCleaningFunctions.cleanDate("Thu, 4 Jan 2018 17:53:36 +0000"));
assertEquals("2015-08-10", GraphCleaningFunctions.doCleanDate("Mon Aug 10 15:44:11 UTC+0100 2015").get()); assertEquals("2015-08-10", GraphCleaningFunctions.cleanDate("Mon Aug 10 15:44:11 UTC+0100 2015"));
assertEquals( assertEquals(
"2015-07-03", "2015-07-03",
GraphCleaningFunctions.doCleanDate("Fri Jul 03 2015 18:04:07 GMT+0100 (GMT Daylight Time)").get()); GraphCleaningFunctions.cleanDate("Fri Jul 03 2015 18:04:07 GMT+0100 (GMT Daylight Time)"));
assertEquals("2012-09-17", GraphCleaningFunctions.doCleanDate("September 17, 2012 10:09am").get()); assertEquals("2012-09-17", GraphCleaningFunctions.cleanDate("September 17, 2012 10:09am"));
assertEquals("2012-09-17", GraphCleaningFunctions.doCleanDate("September 17, 2012 at 10:09am PST-08").get()); assertEquals("2012-09-17", GraphCleaningFunctions.cleanDate("September 17, 2012 at 10:09am PST-08"));
assertEquals("2012-09-17", GraphCleaningFunctions.doCleanDate("September 17, 2012, 10:10:09").get()); assertEquals("2012-09-17", GraphCleaningFunctions.cleanDate("September 17, 2012, 10:10:09"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("October 7, 1970").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("October 7, 1970"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("October 7th, 1970").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("October 7th, 1970"));
assertEquals("2006-02-12", GraphCleaningFunctions.doCleanDate("12 Feb 2006, 19:17").get()); assertEquals("2006-02-12", GraphCleaningFunctions.cleanDate("12 Feb 2006, 19:17"));
assertEquals("2006-02-12", GraphCleaningFunctions.doCleanDate("12 Feb 2006 19:17").get()); assertEquals("2006-02-12", GraphCleaningFunctions.cleanDate("12 Feb 2006 19:17"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("7 oct 70").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("7 oct 70"));
assertEquals("1970-10-07", GraphCleaningFunctions.doCleanDate("7 oct 1970").get()); assertEquals("1970-10-07", GraphCleaningFunctions.cleanDate("7 oct 1970"));
assertEquals("2013-02-03", GraphCleaningFunctions.doCleanDate("03 February 2013").get()); assertEquals("2013-02-03", GraphCleaningFunctions.cleanDate("03 February 2013"));
assertEquals("2013-07-01", GraphCleaningFunctions.doCleanDate("1 July 2013").get()); assertEquals("2013-07-01", GraphCleaningFunctions.cleanDate("1 July 2013"));
assertEquals("2013-02-03", GraphCleaningFunctions.doCleanDate("2013-Feb-03").get()); assertEquals("2013-02-03", GraphCleaningFunctions.cleanDate("2013-Feb-03"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("3/31/2014").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("3/31/2014"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("03/31/2014").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("03/31/2014"));
assertEquals("1971-08-21", GraphCleaningFunctions.doCleanDate("08/21/71").get()); assertEquals("1971-08-21", GraphCleaningFunctions.cleanDate("08/21/71"));
assertEquals("1971-01-08", GraphCleaningFunctions.doCleanDate("8/1/71").get()); assertEquals("1971-01-08", GraphCleaningFunctions.cleanDate("8/1/71"));
assertEquals("2014-08-04", GraphCleaningFunctions.doCleanDate("4/8/2014 22:05").get()); assertEquals("2014-08-04", GraphCleaningFunctions.cleanDate("4/8/2014 22:05"));
assertEquals("2014-08-04", GraphCleaningFunctions.doCleanDate("04/08/2014 22:05").get()); assertEquals("2014-08-04", GraphCleaningFunctions.cleanDate("04/08/2014 22:05"));
assertEquals("2014-08-04", GraphCleaningFunctions.doCleanDate("4/8/14 22:05").get()); assertEquals("2014-08-04", GraphCleaningFunctions.cleanDate("4/8/14 22:05"));
assertEquals("2014-02-04", GraphCleaningFunctions.doCleanDate("04/2/2014 03:00:51").get()); assertEquals("2014-02-04", GraphCleaningFunctions.cleanDate("04/2/2014 03:00:51"));
assertEquals("1965-08-08", GraphCleaningFunctions.doCleanDate("8/8/1965 12:00:00 AM").get()); assertEquals("1965-08-08", GraphCleaningFunctions.cleanDate("8/8/1965 12:00:00 AM"));
assertEquals("1965-08-08", GraphCleaningFunctions.doCleanDate("8/8/1965 01:00:01 PM").get()); assertEquals("1965-08-08", GraphCleaningFunctions.cleanDate("8/8/1965 01:00:01 PM"));
assertEquals("1965-08-08", GraphCleaningFunctions.doCleanDate("8/8/1965 01:00 PM").get()); assertEquals("1965-08-08", GraphCleaningFunctions.cleanDate("8/8/1965 01:00 PM"));
assertEquals("1965-08-08", GraphCleaningFunctions.doCleanDate("8/8/1965 1:00 PM").get()); assertEquals("1965-08-08", GraphCleaningFunctions.cleanDate("8/8/1965 1:00 PM"));
assertEquals("1965-08-08", GraphCleaningFunctions.doCleanDate("8/8/1965 12:00 AM").get()); assertEquals("1965-08-08", GraphCleaningFunctions.cleanDate("8/8/1965 12:00 AM"));
assertEquals("2014-02-04", GraphCleaningFunctions.doCleanDate("4/02/2014 03:00:51").get()); assertEquals("2014-02-04", GraphCleaningFunctions.cleanDate("4/02/2014 03:00:51"));
assertEquals("2012-03-19", GraphCleaningFunctions.doCleanDate("03/19/2012 10:11:59").get()); assertEquals("2012-03-19", GraphCleaningFunctions.cleanDate("03/19/2012 10:11:59"));
assertEquals("2012-03-19", GraphCleaningFunctions.doCleanDate("03/19/2012 10:11:59.3186369").get()); assertEquals("2012-03-19", GraphCleaningFunctions.cleanDate("03/19/2012 10:11:59.3186369"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("2014/3/31").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("2014/3/31"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("2014/03/31").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("2014/03/31"));
assertEquals("2014-04-08", GraphCleaningFunctions.doCleanDate("2014/4/8 22:05").get()); assertEquals("2014-04-08", GraphCleaningFunctions.cleanDate("2014/4/8 22:05"));
assertEquals("2014-04-08", GraphCleaningFunctions.doCleanDate("2014/04/08 22:05").get()); assertEquals("2014-04-08", GraphCleaningFunctions.cleanDate("2014/04/08 22:05"));
assertEquals("2014-04-02", GraphCleaningFunctions.doCleanDate("2014/04/2 03:00:51").get()); assertEquals("2014-04-02", GraphCleaningFunctions.cleanDate("2014/04/2 03:00:51"));
assertEquals("2014-04-02", GraphCleaningFunctions.doCleanDate("2014/4/02 03:00:51").get()); assertEquals("2014-04-02", GraphCleaningFunctions.cleanDate("2014/4/02 03:00:51"));
assertEquals("2012-03-19", GraphCleaningFunctions.doCleanDate("2012/03/19 10:11:59").get()); assertEquals("2012-03-19", GraphCleaningFunctions.cleanDate("2012/03/19 10:11:59"));
assertEquals("2012-03-19", GraphCleaningFunctions.doCleanDate("2012/03/19 10:11:59.3186369").get()); assertEquals("2012-03-19", GraphCleaningFunctions.cleanDate("2012/03/19 10:11:59.3186369"));
assertEquals("2014-04-08", GraphCleaningFunctions.doCleanDate("2014年04月08日").get()); assertEquals("2014-04-08", GraphCleaningFunctions.cleanDate("2014年04月08日"));
assertEquals("2006-01-02", GraphCleaningFunctions.doCleanDate("2006-01-02T15:04:05+0000").get()); assertEquals("2006-01-02", GraphCleaningFunctions.cleanDate("2006-01-02T15:04:05+0000"));
assertEquals("2009-08-13", GraphCleaningFunctions.doCleanDate("2009-08-12T22:15:09-07:00").get()); assertEquals("2009-08-13", GraphCleaningFunctions.cleanDate("2009-08-12T22:15:09-07:00"));
assertEquals("2009-08-12", GraphCleaningFunctions.doCleanDate("2009-08-12T22:15:09").get()); assertEquals("2009-08-12", GraphCleaningFunctions.cleanDate("2009-08-12T22:15:09"));
assertEquals("2009-08-13", GraphCleaningFunctions.doCleanDate("2009-08-12T22:15:09Z").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 17:24:37.3186369"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 17:24:37.3186369").get()); assertEquals("2012-08-03", GraphCleaningFunctions.cleanDate("2012-08-03 18:31:59.257000000"));
assertEquals("2012-08-03", GraphCleaningFunctions.doCleanDate("2012-08-03 18:31:59.257000000").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 17:24:37.123"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 17:24:37.123").get()); assertEquals("2013-04-01", GraphCleaningFunctions.cleanDate("2013-04-01 22:43"));
assertEquals("2013-04-01", GraphCleaningFunctions.doCleanDate("2013-04-01 22:43").get()); assertEquals("2013-04-01", GraphCleaningFunctions.cleanDate("2013-04-01 22:43:22"));
assertEquals("2013-04-01", GraphCleaningFunctions.doCleanDate("2013-04-01 22:43:22").get()); assertEquals("2014-12-16", GraphCleaningFunctions.cleanDate("2014-12-16 06:20:00 UTC"));
assertEquals("2014-12-16", GraphCleaningFunctions.doCleanDate("2014-12-16 06:20:00 UTC").get()); assertEquals("2014-12-16", GraphCleaningFunctions.cleanDate("2014-12-16 06:20:00 GMT"));
assertEquals("2014-12-16", GraphCleaningFunctions.doCleanDate("2014-12-16 06:20:00 GMT").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 05:24:37 PM"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 05:24:37 PM").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 13:13:43 +0800"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 13:13:43 +0800").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 13:13:43 +0800 +08"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 13:13:43 +0800 +08").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26 13:13:44 +09:00"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26 13:13:44 +09:00").get()); assertEquals("2012-08-03", GraphCleaningFunctions.cleanDate("2012-08-03 18:31:59.257000000 +0000 UTC"));
assertEquals("2012-08-03", GraphCleaningFunctions.doCleanDate("2012-08-03 18:31:59.257000000 +0000 UTC").get()); assertEquals("2015-09-30", GraphCleaningFunctions.cleanDate("2015-09-30 18:48:56.35272715 +0000 UTC"));
assertEquals("2015-09-30", GraphCleaningFunctions.doCleanDate("2015-09-30 18:48:56.35272715 +0000 UTC").get()); assertEquals("2015-02-18", GraphCleaningFunctions.cleanDate("2015-02-18 00:12:00 +0000 GMT"));
assertEquals("2015-02-18", GraphCleaningFunctions.doCleanDate("2015-02-18 00:12:00 +0000 GMT").get()); assertEquals("2015-02-18", GraphCleaningFunctions.cleanDate("2015-02-18 00:12:00 +0000 UTC"));
assertEquals("2015-02-18", GraphCleaningFunctions.doCleanDate("2015-02-18 00:12:00 +0000 UTC").get());
assertEquals( assertEquals(
"2015-02-08", GraphCleaningFunctions.doCleanDate("2015-02-08 03:02:00 +0300 MSK m=+0.000000001").get()); "2015-02-08", GraphCleaningFunctions.cleanDate("2015-02-08 03:02:00 +0300 MSK m=+0.000000001"));
assertEquals( assertEquals(
"2015-02-08", GraphCleaningFunctions.doCleanDate("2015-02-08 03:02:00.001 +0300 MSK m=+0.000000001").get()); "2015-02-08", GraphCleaningFunctions.cleanDate("2015-02-08 03:02:00.001 +0300 MSK m=+0.000000001"));
assertEquals("2017-07-19", GraphCleaningFunctions.doCleanDate("2017-07-19 03:21:51+00:00").get()); assertEquals("2017-07-19", GraphCleaningFunctions.cleanDate("2017-07-19 03:21:51+00:00"));
assertEquals("2014-04-26", GraphCleaningFunctions.doCleanDate("2014-04-26").get()); assertEquals("2014-04-26", GraphCleaningFunctions.cleanDate("2014-04-26"));
assertEquals("2014-04-01", GraphCleaningFunctions.doCleanDate("2014-04").get()); assertEquals("2014-04-01", GraphCleaningFunctions.cleanDate("2014-04"));
assertEquals("2014-01-01", GraphCleaningFunctions.doCleanDate("2014").get()); assertEquals("2014-01-01", GraphCleaningFunctions.cleanDate("2014"));
assertEquals("2014-05-11", GraphCleaningFunctions.doCleanDate("2014-05-11 08:20:13,787").get()); assertEquals("2014-05-11", GraphCleaningFunctions.cleanDate("2014-05-11 08:20:13,787"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("3.31.2014").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("3.31.2014"));
assertEquals("2014-03-31", GraphCleaningFunctions.doCleanDate("03.31.2014").get()); assertEquals("2014-03-31", GraphCleaningFunctions.cleanDate("03.31.2014"));
assertEquals("1971-08-21", GraphCleaningFunctions.doCleanDate("08.21.71").get()); assertEquals("1971-08-21", GraphCleaningFunctions.cleanDate("08.21.71"));
assertEquals("2014-03-01", GraphCleaningFunctions.doCleanDate("2014.03").get()); assertEquals("2014-03-01", GraphCleaningFunctions.cleanDate("2014.03"));
assertEquals("2014-03-30", GraphCleaningFunctions.doCleanDate("2014.03.30").get()); assertEquals("2014-03-30", GraphCleaningFunctions.cleanDate("2014.03.30"));
assertEquals("2014-06-01", GraphCleaningFunctions.doCleanDate("20140601").get()); assertEquals("2014-06-01", GraphCleaningFunctions.cleanDate("20140601"));
assertEquals("2014-07-22", GraphCleaningFunctions.doCleanDate("20140722105203").get()); assertEquals("2014-07-22", GraphCleaningFunctions.cleanDate("20140722105203"));
assertEquals("2012-03-19", GraphCleaningFunctions.doCleanDate("1332151919").get()); assertEquals("2012-03-19", GraphCleaningFunctions.cleanDate("1332151919"));
assertEquals("2013-11-12", GraphCleaningFunctions.doCleanDate("1384216367189").get()); assertEquals("2013-11-12", GraphCleaningFunctions.cleanDate("1384216367189"));
assertEquals("2013-11-12", GraphCleaningFunctions.doCleanDate("1384216367111222").get()); assertEquals("2013-11-12", GraphCleaningFunctions.cleanDate("1384216367111222"));
assertEquals("2013-11-12", GraphCleaningFunctions.doCleanDate("1384216367111222333").get()); assertEquals("2013-11-12", GraphCleaningFunctions.cleanDate("1384216367111222333"));
} }

75
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
View File

@ -27,15 +27,7 @@ import static eu.dnetlib.dhp.schema.common.ModelConstants.RESULT_PROJECT;
import static eu.dnetlib.dhp.schema.common.ModelConstants.RESULT_RESULT; import static eu.dnetlib.dhp.schema.common.ModelConstants.RESULT_RESULT;
import static eu.dnetlib.dhp.schema.common.ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE; import static eu.dnetlib.dhp.schema.common.ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE;
import static eu.dnetlib.dhp.schema.common.ModelConstants.USER_CLAIM; import static eu.dnetlib.dhp.schema.common.ModelConstants.USER_CLAIM;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.asString; import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.*;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.createOpenaireId;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.dataInfo;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.field;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.journal;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.listFields;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.listKeyValues;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.qualifier;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.structuredProperty;
import java.io.Closeable; import java.io.Closeable;
import java.io.IOException; import java.io.IOException;
@ -245,22 +237,20 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
ds ds
.setOriginalId( .setOriginalId(
Arrays Arrays
.asList((String[]) rs.getArray("identities").getArray()) .asList((String[]) rs.getArray("originalid").getArray())
.stream() .stream()
.filter(StringUtils::isNotBlank) .filter(StringUtils::isNotBlank)
.collect(Collectors.toList())); .collect(Collectors.toList()));
ds ds.setCollectedfrom(prepareCollectedfrom(rs.getArray("collectedfrom")));
.setCollectedfrom( ds.setPid(prepareListOfStructProps(rs.getArray("pid"), info));
listKeyValues(
createOpenaireId(10, rs.getString("collectedfromid"), true),
rs.getString("collectedfromname")));
ds.setPid(new ArrayList<>());
ds.setDateofcollection(asString(rs.getDate("dateofcollection"))); ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
ds.setDateoftransformation(null); // Value not returned by the SQL query ds.setDateoftransformation(null); // Value not returned by the SQL query
ds.setExtraInfo(new ArrayList<>()); // Values not present in the DB ds.setExtraInfo(new ArrayList<>()); // Values not present in the DB
ds.setOaiprovenance(null); // Values not present in the DB ds.setOaiprovenance(null); // Values not present in the DB
ds.setDatasourcetype(prepareQualifierSplitting(rs.getString("datasourcetype"))); ds.setDatasourcetype(prepareQualifierSplitting(rs.getString("datasourcetype")));
ds.setDatasourcetypeui(prepareQualifierSplitting(rs.getString("datasourcetypeui"))); ds.setDatasourcetypeui(prepareQualifierSplitting(rs.getString("datasourcetypeui")));
ds.setEosctype(prepareQualifierSplitting(rs.getString("eosctype")));
ds.setEoscdatasourcetype(prepareQualifierSplitting(rs.getString("eoscdatasourcetype")));
ds.setOpenairecompatibility(prepareQualifierSplitting(rs.getString("openairecompatibility"))); ds.setOpenairecompatibility(prepareQualifierSplitting(rs.getString("openairecompatibility")));
ds.setOfficialname(field(rs.getString("officialname"), info)); ds.setOfficialname(field(rs.getString("officialname"), info));
ds.setEnglishname(field(rs.getString("englishname"), info)); ds.setEnglishname(field(rs.getString("englishname"), info));
@ -277,6 +267,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
ds.setOdnumberofitemsdate(field(asString(rs.getDate("odnumberofitemsdate")), info)); ds.setOdnumberofitemsdate(field(asString(rs.getDate("odnumberofitemsdate")), info));
ds.setOdpolicies(field(rs.getString("odpolicies"), info)); ds.setOdpolicies(field(rs.getString("odpolicies"), info));
ds.setOdlanguages(prepareListFields(rs.getArray("odlanguages"), info)); ds.setOdlanguages(prepareListFields(rs.getArray("odlanguages"), info));
ds.setLanguages(listValues(rs.getArray("languages")));
ds.setOdcontenttypes(prepareListFields(rs.getArray("odcontenttypes"), info)); ds.setOdcontenttypes(prepareListFields(rs.getArray("odcontenttypes"), info));
ds.setAccessinfopackage(prepareListFields(rs.getArray("accessinfopackage"), info)); ds.setAccessinfopackage(prepareListFields(rs.getArray("accessinfopackage"), info));
ds.setReleasestartdate(field(asString(rs.getDate("releasestartdate")), info)); ds.setReleasestartdate(field(asString(rs.getDate("releasestartdate")), info));
@ -289,8 +280,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
ds.setDatabaseaccessrestriction(field(rs.getString("databaseaccessrestriction"), info)); ds.setDatabaseaccessrestriction(field(rs.getString("databaseaccessrestriction"), info));
ds.setDatauploadrestriction(field(rs.getString("datauploadrestriction"), info)); ds.setDatauploadrestriction(field(rs.getString("datauploadrestriction"), info));
ds.setVersioning(field(rs.getBoolean("versioning"), info)); ds.setVersioning(field(rs.getBoolean("versioning"), info));
ds.setVersioncontrol(rs.getBoolean("versioncontrol"));
ds.setCitationguidelineurl(field(rs.getString("citationguidelineurl"), info)); ds.setCitationguidelineurl(field(rs.getString("citationguidelineurl"), info));
ds.setQualitymanagementkind(field(rs.getString("qualitymanagementkind"), info));
ds.setPidsystems(field(rs.getString("pidsystems"), info)); ds.setPidsystems(field(rs.getString("pidsystems"), info));
ds.setCertificates(field(rs.getString("certificates"), info)); ds.setCertificates(field(rs.getString("certificates"), info));
ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
@ -299,13 +291,20 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
journal( journal(
rs.getString("officialname"), rs.getString("issnPrinted"), rs.getString("issnOnline"), rs.getString("officialname"), rs.getString("issnPrinted"), rs.getString("issnOnline"),
rs.getString("issnLinking"), info)); // Journal rs.getString("issnLinking"), info)); // Journal
ds.setDataInfo(info);
ds.setLastupdatetimestamp(lastUpdateTimestamp);
ds.setResearchentitytypes(listValues(rs.getArray("researchentitytypes")));
ds.setProvidedproducttypes(listValues(rs.getArray("providedproducttypes")));
ds.setJurisdiction(prepareQualifierSplitting(rs.getString("jurisdiction"))); ds.setJurisdiction(prepareQualifierSplitting(rs.getString("jurisdiction")));
ds.setThematic(rs.getBoolean("thematic")); ds.setThematic(rs.getBoolean("thematic"));
ds.setKnowledgegraph(rs.getBoolean("knowledgegraph")); ds.setKnowledgegraph(rs.getBoolean("knowledgegraph"));
ds.setContentpolicies(prepareListOfQualifiers(rs.getArray("contentpolicies"))); ds.setContentpolicies(prepareListOfQualifiers(rs.getArray("contentpolicies")));
ds.setSubmissionpolicyurl(rs.getString("submissionpolicyurl"));
ds.setPreservationpolicyurl(rs.getString("preservationpolicyurl"));
ds.setResearchproductaccesspolicies(listValues(rs.getArray("researchproductaccesspolicies")));
ds
.setResearchproductmetadataaccesspolicies(
listValues(rs.getArray("researchproductmetadataaccesspolicies")));
ds.setConsenttermsofuse(rs.getBoolean("consenttermsofuse")); ds.setConsenttermsofuse(rs.getBoolean("consenttermsofuse"));
ds.setFulltextdownload(rs.getBoolean("fulltextdownload")); ds.setFulltextdownload(rs.getBoolean("fulltextdownload"));
ds ds
@ -313,8 +312,18 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
Optional Optional
.ofNullable( .ofNullable(
rs.getDate("consenttermsofusedate")) rs.getDate("consenttermsofusedate"))
.map(c -> c.toString()) .map(java.sql.Date::toString)
.orElse(null)); .orElse(null));
ds
.setLastconsenttermsofusedate(
Optional
.ofNullable(
rs.getDate("lastconsenttermsofusedate"))
.map(java.sql.Date::toString)
.orElse(null));
ds.setDataInfo(info);
ds.setLastupdatetimestamp(lastUpdateTimestamp);
return Arrays.asList(ds); return Arrays.asList(ds);
} catch (final Exception e) { } catch (final Exception e) {
@ -603,6 +612,32 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
String.format("%.3f", trust)); String.format("%.3f", trust));
} }
private List<KeyValue> prepareCollectedfrom(Array values) throws SQLException {
if (Objects.isNull(values)) {
return null;
}
return Arrays
.stream((String[]) values.getArray())
.filter(Objects::nonNull)
.distinct()
.map(s -> keyValueSplitting(s, "@@@"))
.collect(Collectors.toList());
}
public static KeyValue keyValueSplitting(final String s, String separator) {
if (StringUtils.isBlank(s)) {
return null;
}
final String[] arr = s.split(separator);
if (arr.length != 2) {
return null;
}
KeyValue kv = new KeyValue();
kv.setKey(createOpenaireId(10, arr[0], true));
kv.setValue(arr[1]);
return kv;
}
private Qualifier prepareQualifierSplitting(final String s) { private Qualifier prepareQualifierSplitting(final String s) {
if (StringUtils.isBlank(s)) { if (StringUtils.isBlank(s)) {
return null; return null;

52
dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryServices.sql
View File

@ -1,6 +1,7 @@
SELECT SELECT
d.id AS datasourceid, d.id AS datasourceid,
array_remove(d.id || array_agg(distinct di.pid) filter (where di.pid like 'piwik%') || array_agg(distinct dds.duplicate), NULL) AS identities, array_remove(d.id || array_agg(distinct CASE WHEN dp.pid like 'piwik%' THEN di.pid ELSE NULL END) || array_agg(distinct dds.duplicate), NULL) AS originalid,
array_remove(array_agg(distinct CASE WHEN di.pid NOT LIKE 'piwik%' THEN di.pid||'###'||di.issuertype||'@@@'||'dnet:pid_types' ELSE NULL END), NULL) as pid,
d.officialname AS officialname, d.officialname AS officialname,
d.englishname AS englishname, d.englishname AS englishname,
d.contactemail AS contactemail, d.contactemail AS contactemail,
@ -9,8 +10,8 @@ SELECT
THEN THEN
'openaire-cris_1.1@@@dnet:datasourceCompatibilityLevel' 'openaire-cris_1.1@@@dnet:datasourceCompatibilityLevel'
WHEN (array_agg(DISTINCT COALESCE (a.compatibility_override, a.compatibility):: TEXT) @> ARRAY ['openaire4.0']) WHEN (array_agg(DISTINCT COALESCE (a.compatibility_override, a.compatibility):: TEXT) @> ARRAY ['openaire4.0'])
THEN THEN
'openaire4.0@@@dnet:datasourceCompatibilityLevel' 'openaire4.0@@@dnet:datasourceCompatibilityLevel'
WHEN (array_agg(DISTINCT COALESCE (a.compatibility_override, a.compatibility):: TEXT) @> ARRAY ['driver', 'openaire2.0']) WHEN (array_agg(DISTINCT COALESCE (a.compatibility_override, a.compatibility):: TEXT) @> ARRAY ['driver', 'openaire2.0'])
THEN THEN
'driver-openaire2.0@@@dnet:datasourceCompatibilityLevel' 'driver-openaire2.0@@@dnet:datasourceCompatibilityLevel'
@ -40,29 +41,28 @@ SELECT
END AS openairecompatibility, END AS openairecompatibility,
d.websiteurl AS websiteurl, d.websiteurl AS websiteurl,
d.logourl AS logourl, d.logourl AS logourl,
array_agg(DISTINCT CASE WHEN a.protocol = 'oai' and last_aggregation_date is not null THEN a.baseurl ELSE NULL END) AS accessinfopackage, array_remove(array_agg(DISTINCT CASE WHEN a.protocol = 'oai' and last_aggregation_date is not null THEN a.baseurl ELSE NULL END), NULL) AS accessinfopackage,
d.latitude AS latitude, d.latitude AS latitude,
d.longitude AS longitude, d.longitude AS longitude,
d.namespaceprefix AS namespaceprefix, d.namespaceprefix AS namespaceprefix,
NULL AS odnumberofitems, NULL AS odnumberofitems,
NULL AS odnumberofitemsdate, NULL AS odnumberofitemsdate,
(SELECT array_agg(s|| '###keywords@@@dnet:subject_classification_typologies') (SELECT array_agg(s|| '###keywords@@@dnet:subject_classification_typologies')
FROM UNNEST( FROM UNNEST(
ARRAY( ARRAY(
SELECT trim(s) SELECT trim(s)
FROM unnest(string_to_array(d.subjects, '@@')) AS s)) AS s) AS subjects, FROM unnest(string_to_array(d.subjects, '@@')) AS s)) AS s) AS subjects,
d.description AS description, d.description AS description,
NULL AS odpolicies, NULL AS odpolicies,
ARRAY(SELECT trim(s) array_remove(ARRAY(SELECT trim(s)
FROM unnest(string_to_array(d.languages, ',')) AS s) AS odlanguages, FROM unnest(string_to_array(regexp_replace(d.languages, '{|}|"', '', 'g') ',')) AS s), '{}') AS odlanguages,
ARRAY(SELECT trim(s) array_remove(ARRAY(SELECT trim(s)
FROM unnest(string_to_array(d.languages, ',')) AS s) AS languages, FROM unnest(string_to_array(regexp_replace(d.languages, '{|}|"', '', 'g') ',')) AS s), '{}') AS languages,
-- Term provided only by OpenDOAR: -- Term provided only by OpenDOAR:
-- probably updating the TR it could be replaced by research_entity_types[] -- probably updating the TR it could be replaced by research_entity_types[]
-- But a study on the vocabulary terms is needed -- But a study on the vocabulary terms is needed
-- REMOVED: ARRAY(SELECT trim(s) FROM unnest(string_to_array(d.od_contenttypes, '-')) AS s) AS odcontenttypes, -- REMOVED: ARRAY(SELECT trim(s) FROM unnest(string_to_array(d.od_contenttypes, '-')) AS s) AS odcontenttypes,
false AS inferred, false AS inferred,
false AS deletedbyinference, false AS deletedbyinference,
@ -81,20 +81,24 @@ SELECT
d.datauploadtype AS datauploadtype, d.datauploadtype AS datauploadtype,
d.databaseaccessrestriction AS databaseaccessrestriction, d.databaseaccessrestriction AS databaseaccessrestriction,
d.datauploadrestriction AS datauploadrestriction, d.datauploadrestriction AS datauploadrestriction,
-- REPLACED BY version_control : d.versioning AS versioning, -- REPLACED BY version_control : d.versioning AS versioning,
d.version_control AS versioning, d.version_control AS versioning,
d.version_control AS versioncontrol, d.version_control AS versioncontrol,
d.citationguidelineurl AS citationguidelineurl, d.citationguidelineurl AS citationguidelineurl,
array_to_string(array_agg(distinct dps.scheme), ' ') AS pidsystems,
d.pidsystems AS pidsystems,
d.certificates AS certificates, d.certificates AS certificates,
ARRAY[]::text[] AS policies, ARRAY[]::text[] AS policies,
array_remove(dc.id||'@@@'||dc.officialname || array_agg(distinct dds_cf.id||'@@@'||dds_cf.officialname), NULL) AS collectedfrom, array_remove(
array(
select distinct cf
from unnest(
dc.id||'@@@'||dc.officialname || array_agg(distinct dds_cf.id||'@@@'||dds_cf.officialname)
) as cf),
NULL) AS collectedfrom,
d._typology_to_remove_||'@@@dnet:datasource_typologies' AS datasourcetype, d._typology_to_remove_||'@@@dnet:datasource_typologies' AS datasourcetype,
d._typology_to_remove_||'@@@dnet:datasource_typologies_ui' AS datasourcetypeui,
d.eosc_type||'@@@dnet:eosc_types' AS eosctype, d.eosc_type||'@@@dnet:eosc_types' AS eosctype,
d.eosc_datasource_type||'@@@dnet:eosc_datasource_types' AS eoscdatasourcetype, d.eosc_datasource_type||'@@@dnet:eosc_datasource_types' AS eoscdatasourcetype,
'sysimport:crosswalk:entityregistry@@@dnet:provenance_actions' AS provenanceaction,
d.issn AS issnPrinted, d.issn AS issnPrinted,
d.eissn AS issnOnline, d.eissn AS issnOnline,
d.lissn AS issnLinking, d.lissn AS issnLinking,
@ -107,19 +111,20 @@ SELECT
d.thematic AS thematic, d.thematic AS thematic,
-- REMOVED ???: d.knowledge_graph AS knowledgegraph, -- REMOVED ???: d.knowledge_graph AS knowledgegraph,
array(select unnest(d.content_policies)||'@@@eosc:contentpolicies') AS contentpolicies, array(select unnest(d.content_policies)||'@@@eosc:contentpolicies') AS contentpolicies,
d.submission_policy_url AS submissionpolicyurl, nullif(trim(d.submission_policy_url), '') AS submissionpolicyurl,
d.preservation_policy_url AS preservationpolicyurl, nullif(trim(d.preservation_policy_url), '') AS preservationpolicyurl,
d.research_product_access_policies AS researchproductaccesspolicies, array_remove(d.research_product_access_policies, '') AS researchproductaccesspolicies,
d.research_product_metadata_access_policies AS researchproductmetadataaccesspolicies array_remove(d.research_product_metadata_access_policies, '') AS researchproductmetadataaccesspolicies
FROM dsm_services d FROM dsm_services d
LEFT OUTER JOIN dsm_services dc on (d.collectedfrom = dc.id) LEFT OUTER JOIN dsm_services dc on (d.collectedfrom = dc.id)
LEFT OUTER JOIN dsm_api a ON (d.id = a.service) LEFT OUTER JOIN dsm_api a ON (d.id = a.service)
LEFT OUTER JOIN dsm_servicepids di ON (d.id = di.service) LEFT OUTER JOIN dsm_servicepids dp ON (d.id = dp.service)
LEFT OUTER JOIN dsm_identities di ON (dp.pid = di.pid)
LEFT OUTER JOIN dsm_dedup_services dds ON (d.id = dds.id) LEFT OUTER JOIN dsm_dedup_services dds ON (d.id = dds.id)
LEFT OUTER JOIN dsm_services dds_dup ON (dds.duplicate = dds_dup.id) LEFT OUTER JOIN dsm_services dds_dup ON (dds.duplicate = dds_dup.id)
LEFT OUTER JOIN dsm_services dds_cf ON (dds_dup.collectedfrom = dds_cf.id) LEFT OUTER JOIN dsm_services dds_cf ON (dds_dup.collectedfrom = dds_cf.id)
LEFT OUTER JOIN dsm_pid_systems dps ON (d.id = dps.service)
WHERE WHERE
d.dedup_main_service = true d.dedup_main_service = true
@ -150,7 +155,6 @@ GROUP BY
d.version_control, d.version_control,
d.citationguidelineurl, d.citationguidelineurl,
-- REMOVED: d.qualitymanagementkind, -- REMOVED: d.qualitymanagementkind,
d.pidsystems,
d.certificates, d.certificates,
dc.id, dc.id,
dc.officialname, dc.officialname,

137
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplicationTest.java
View File

@ -12,8 +12,11 @@ import java.sql.Array;
import java.sql.Date; import java.sql.Date;
import java.sql.ResultSet; import java.sql.ResultSet;
import java.sql.SQLException; import java.sql.SQLException;
import java.util.HashSet;
import java.util.List; import java.util.List;
import java.util.Objects; import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
@ -28,12 +31,7 @@ import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup; import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
import eu.dnetlib.dhp.schema.oaf.Datasource; import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import eu.dnetlib.dhp.schema.oaf.Organization;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils;
@ExtendWith(MockitoExtension.class) @ExtendWith(MockitoExtension.class)
@ -64,7 +62,7 @@ public class MigrateDbEntitiesApplicationTest {
@Test @Test
public void testProcessService() throws Exception { public void testProcessService() throws Exception {
final List<TypedField> fields = prepareMocks("datasources_resultset_entry.json"); final List<TypedField> fields = prepareMocks("services_resultset_entry.json");
final List<Oaf> list = app.processService(rs); final List<Oaf> list = app.processService(rs);
assertEquals(1, list.size()); assertEquals(1, list.size());
@ -72,13 +70,17 @@ public class MigrateDbEntitiesApplicationTest {
final Datasource ds = (Datasource) list.get(0); final Datasource ds = (Datasource) list.get(0);
assertValidId(ds.getId()); assertValidId(ds.getId());
assertValidId(ds.getCollectedfrom().get(0).getKey()); ds
.getCollectedfrom()
.stream()
.map(KeyValue::getKey)
.forEach(dsId -> assertValidId(dsId));
assertEquals(getValueAsString("officialname", fields), ds.getOfficialname().getValue()); assertEquals(getValueAsString("officialname", fields), ds.getOfficialname().getValue());
assertEquals(getValueAsString("englishname", fields), ds.getEnglishname().getValue()); assertEquals(getValueAsString("englishname", fields), ds.getEnglishname().getValue());
assertEquals(getValueAsString("contactemail", fields), ds.getContactemail().getValue());
assertEquals(getValueAsString("websiteurl", fields), ds.getWebsiteurl().getValue()); assertEquals(getValueAsString("websiteurl", fields), ds.getWebsiteurl().getValue());
assertEquals(getValueAsString("logourl", fields), ds.getLogourl());
assertEquals(getValueAsString("contactemail", fields), ds.getContactemail().getValue());
assertEquals(getValueAsString("namespaceprefix", fields), ds.getNamespaceprefix().getValue()); assertEquals(getValueAsString("namespaceprefix", fields), ds.getNamespaceprefix().getValue());
assertEquals(getValueAsString("collectedfromname", fields), ds.getCollectedfrom().get(0).getValue());
assertEquals(getValueAsString("officialname", fields), ds.getJournal().getName()); assertEquals(getValueAsString("officialname", fields), ds.getJournal().getName());
assertEquals(getValueAsString("issnPrinted", fields), ds.getJournal().getIssnPrinted()); assertEquals(getValueAsString("issnPrinted", fields), ds.getJournal().getIssnPrinted());
assertEquals(getValueAsString("issnOnline", fields), ds.getJournal().getIssnOnline()); assertEquals(getValueAsString("issnOnline", fields), ds.getJournal().getIssnOnline());
@ -90,19 +92,103 @@ public class MigrateDbEntitiesApplicationTest {
assertEquals("pubsrepository::journal", ds.getDatasourcetypeui().getClassid()); assertEquals("pubsrepository::journal", ds.getDatasourcetypeui().getClassid());
assertEquals("dnet:datasource_typologies_ui", ds.getDatasourcetypeui().getSchemeid()); assertEquals("dnet:datasource_typologies_ui", ds.getDatasourcetypeui().getSchemeid());
assertEquals("Data Source", ds.getEosctype().getClassid());
assertEquals("Data Source", ds.getEosctype().getClassname());
assertEquals("dnet:eosc_types", ds.getEosctype().getSchemeid());
assertEquals("dnet:eosc_types", ds.getEosctype().getSchemename());
assertEquals("Journal archive", ds.getEoscdatasourcetype().getClassid());
assertEquals("Journal archive", ds.getEoscdatasourcetype().getClassname());
assertEquals("dnet:eosc_datasource_types", ds.getEoscdatasourcetype().getSchemeid());
assertEquals("dnet:eosc_datasource_types", ds.getEoscdatasourcetype().getSchemename());
assertEquals("openaire4.0", ds.getOpenairecompatibility().getClassid());
assertEquals("openaire4.0", ds.getOpenairecompatibility().getClassname());
assertEquals("dnet:datasourceCompatibilityLevel", ds.getOpenairecompatibility().getSchemeid());
assertEquals("dnet:datasourceCompatibilityLevel", ds.getOpenairecompatibility().getSchemename());
assertEquals(getValueAsDouble("latitude", fields).toString(), ds.getLatitude().getValue());
assertEquals(getValueAsDouble("longitude", fields).toString(), ds.getLongitude().getValue());
assertEquals(getValueAsString("dateofvalidation", fields), ds.getDateofvalidation());
assertEquals(getValueAsString("description", fields), ds.getDescription().getValue());
// TODO assertEquals(getValueAsString("subjects", fields), ds.getSubjects());
assertEquals("0.0", ds.getOdnumberofitems().getValue());
assertEquals(getValueAsString("odnumberofitemsdate", fields), ds.getOdnumberofitemsdate());
assertEquals(getValueAsString("odpolicies", fields), ds.getOdpolicies());
assertEquals(
getValueAsList("odlanguages", fields),
ds.getOdlanguages().stream().map(Field::getValue).collect(Collectors.toList()));
assertEquals(getValueAsList("languages", fields), ds.getLanguages());
assertEquals(
getValueAsList("odcontenttypes", fields),
ds.getOdcontenttypes().stream().map(Field::getValue).collect(Collectors.toList()));
assertEquals(
getValueAsList("accessinfopackage", fields),
ds.getAccessinfopackage().stream().map(Field::getValue).collect(Collectors.toList()));
assertEquals(getValueAsString("releasestartdate", fields), ds.getReleasestartdate());
assertEquals(getValueAsString("releaseenddate", fields), ds.getReleasestartdate());
assertEquals(getValueAsString("missionstatementurl", fields), ds.getMissionstatementurl());
assertEquals(false, ds.getDataprovider().getValue());
assertEquals(false, ds.getServiceprovider().getValue());
assertEquals(getValueAsString("databaseaccesstype", fields), ds.getDatabaseaccesstype());
assertEquals(getValueAsString("datauploadtype", fields), ds.getDatauploadtype());
assertEquals(getValueAsString("databaseaccessrestriction", fields), ds.getDatabaseaccessrestriction());
assertEquals(getValueAsString("datauploadrestriction", fields), ds.getDatauploadrestriction());
assertEquals(false, ds.getVersioning().getValue());
assertEquals(false, ds.getVersioncontrol());
assertEquals(getValueAsString("citationguidelineurl", fields), ds.getCitationguidelineurl());
assertEquals(getValueAsString("pidsystems", fields), ds.getPidsystems());
assertEquals(getValueAsString("certificates", fields), ds.getCertificates());
assertEquals(getValueAsList("researchentitytypes", fields), ds.getResearchentitytypes());
assertEquals(getValueAsList("providedproducttypes", fields), ds.getProvidedproducttypes());
assertEquals("National", ds.getJurisdiction().getClassid()); assertEquals("National", ds.getJurisdiction().getClassid());
assertEquals("eosc:jurisdictions", ds.getJurisdiction().getSchemeid()); assertEquals("eosc:jurisdictions", ds.getJurisdiction().getSchemeid());
assertTrue(ds.getThematic()); assertTrue(ds.getThematic());
assertTrue(ds.getKnowledgegraph()); assertTrue(ds.getKnowledgegraph());
assertEquals(1, ds.getContentpolicies().size()); HashSet<String> cpSchemeId = ds
assertEquals("Journal article", ds.getContentpolicies().get(0).getClassid()); .getContentpolicies()
assertEquals("eosc:contentpolicies", ds.getContentpolicies().get(0).getSchemeid()); .stream()
.map(Qualifier::getSchemeid)
.collect(Collectors.toCollection(HashSet::new));
assertTrue(cpSchemeId.size() == 1);
assertTrue(cpSchemeId.contains("eosc:contentpolicies"));
HashSet<String> cpSchemeName = ds
.getContentpolicies()
.stream()
.map(Qualifier::getSchemename)
.collect(Collectors.toCollection(HashSet::new));
assertTrue(cpSchemeName.size() == 1);
assertTrue(cpSchemeName.contains("eosc:contentpolicies"));
assertEquals(2, ds.getContentpolicies().size());
assertEquals("Taxonomic classification", ds.getContentpolicies().get(0).getClassid());
assertEquals("Resource collection", ds.getContentpolicies().get(1).getClassid());
assertEquals(getValueAsString("submissionpolicyurl", fields), ds.getSubmissionpolicyurl());
assertEquals(getValueAsString("preservationpolicyurl", fields), ds.getPreservationpolicyurl());
assertEquals(
getValueAsList("researchproductaccesspolicies", fields),
ds.getResearchproductaccesspolicies());
assertEquals(
getValueAsList("researchproductmetadataaccesspolicies", fields),
ds.getResearchproductmetadataaccesspolicies());
assertEquals(true, ds.getConsenttermsofuse()); assertEquals(true, ds.getConsenttermsofuse());
assertEquals(true, ds.getFulltextdownload()); assertEquals(true, ds.getFulltextdownload());
assertEquals("2022-03-11", ds.getConsenttermsofusedate()); assertEquals("2022-03-11", ds.getConsenttermsofusedate());
assertEquals("2022-03-11", ds.getLastconsenttermsofusedate());
} }
@Test @Test
@ -356,18 +442,31 @@ public class MigrateDbEntitiesApplicationTest {
} }
private Float getValueAsFloat(final String name, final List<TypedField> fields) { private Float getValueAsFloat(final String name, final List<TypedField> fields) {
return new Float(getValueAs(name, fields).toString()); final Object value = getValueAs(name, fields);
return value != null ? new Float(value.toString()) : null;
}
private Double getValueAsDouble(final String name, final List<TypedField> fields) {
final Object value = getValueAs(name, fields);
return value != null ? new Double(value.toString()) : null;
}
private Integer getValueAsInt(final String name, final List<TypedField> fields) {
final Object value = getValueAs(name, fields);
return value != null ? new Integer(value.toString()) : null;
} }
private <T> T getValueAs(final String name, final List<TypedField> fields) { private <T> T getValueAs(final String name, final List<TypedField> fields) {
return fields final Optional<T> field = fields
.stream() .stream()
.filter(f -> f.getField().equals(name)) .filter(f -> f.getField().equals(name))
.map(TypedField::getValue)
.filter(Objects::nonNull)
.map(o -> (T) o)
.findFirst() .findFirst()
.get(); .map(TypedField::getValue)
.map(o -> (T) o);
if (!field.isPresent()) {
return null;
}
return field.get();
} }
private List<String> getValueAsList(final String name, final List<TypedField> fields) { private List<String> getValueAsList(final String name, final List<TypedField> fields) {

229
dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/datasources_resultset_entry.json → dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/services_resultset_entry.json
View File

@ -5,14 +5,47 @@
"value": "274269ac6f3b::2579-5449" "value": "274269ac6f3b::2579-5449"
}, },
{ {
"field": "identities", "field": "originalid",
"type": "array", "type": "array",
"value": [ "value": [
"274269ac6f3b::2579-5449", "fairsharing_::1562",
"piwik:13", "piwik:13",
null null,
"re3data_____::r3d100010213"
] ]
}, },
{
"field": "pid",
"type": "array",
"value": [
"r3d100010218###re3data@@@dnet:pid_types"
]
},
{
"field": "datasourcetype",
"type": "string",
"value": "pubsrepository::journal@@@dnet:datasource_typologies"
},
{
"field": "datasourcetypeui",
"type": "string",
"value": "pubsrepository::journal@@@dnet:datasource_typologies_ui"
},
{
"field": "eosctype",
"type": "string",
"value": "Data Source@@@dnet:eosc_types"
},
{
"field": "eoscdatasourcetype",
"type": "string",
"value": "Journal archive@@@dnet:eosc_datasource_types"
},
{
"field": "openairecompatibility",
"type": "string",
"value": "openaire4.0@@@dnet:datasourceCompatibilityLevel"
},
{ {
"field": "officialname", "field": "officialname",
"type": "string", "type": "string",
@ -23,16 +56,6 @@
"type": "string", "type": "string",
"value": "Jurnal Ilmiah Pendidikan Scholastic" "value": "Jurnal Ilmiah Pendidikan Scholastic"
}, },
{
"field": "contactemail",
"type": "string",
"value": "test@test.it"
},
{
"field": "openairecompatibility",
"type": "string",
"value": "hostedBy@@@dnet:datasourceCompatibilityLevel"
},
{ {
"field": "websiteurl", "field": "websiteurl",
"type": "string", "type": "string",
@ -44,11 +67,14 @@
"value": null "value": null
}, },
{ {
"field": "accessinfopackage", "field": "contactemail",
"type": "array", "type": "string",
"value": [ "value": "test@test.it"
null },
] {
"field": "namespaceprefix",
"type": "string",
"value": "ojs_25795449"
}, },
{ {
"field": "latitude", "field": "latitude",
@ -61,9 +87,19 @@
"value": 0 "value": 0
}, },
{ {
"field": "namespaceprefix", "field": "dateofvalidation",
"type": "date",
"value": null
},
{
"field": "description",
"type": "string", "type": "string",
"value": "ojs_25795449" "value": "veterinary medicine"
},
{
"field": "subjects",
"type": "array",
"value": []
}, },
{ {
"field": "odnumberofitems", "field": "odnumberofitems",
@ -75,16 +111,6 @@
"type": "date", "type": "date",
"value": null "value": null
}, },
{
"field": "subjects",
"type": "array",
"value": null
},
{
"field": "description",
"type": "string",
"value": null
},
{ {
"field": "odpolicies", "field": "odpolicies",
"type": "string", "type": "string",
@ -93,7 +119,26 @@
{ {
"field": "odlanguages", "field": "odlanguages",
"type": "array", "type": "array",
"value": [] "value": [
"English",
"German",
"French",
"Danish",
"Norwegian",
"Swedish"
]
},
{
"field": "languages",
"type": "array",
"value": [
"English",
"German",
"French",
"Danish",
"Norwegian",
"Swedish"
]
}, },
{ {
"field": "odcontenttypes", "field": "odcontenttypes",
@ -103,34 +148,11 @@
] ]
}, },
{ {
"field": "inferred", "field": "accessinfopackage",
"type": "boolean", "type": "array",
"value": false "value": [
}, "http://www.revista.vocesdelaeducacion.com.mx/index.php/index/oai"
{ ]
"field": "deletedbyinference",
"type": "boolean",
"value": false
},
{
"field": "trust",
"type": "double",
"value": 0.9
},
{
"field": "inferenceprovenance",
"type": "string",
"value": null
},
{
"field": "dateofcollection",
"type": "date",
"value": "2020-01-21"
},
{
"field": "dateofvalidation",
"type": "date",
"value": null
}, },
{ {
"field": "releasestartdate", "field": "releasestartdate",
@ -183,12 +205,12 @@
"value": null "value": null
}, },
{ {
"field": "citationguidelineurl", "field": "versioncontrol",
"type": "string", "type": "boolean",
"value": null "value": null
}, },
{ {
"field": "qualitymanagementkind", "field": "citationguidelineurl",
"type": "string", "type": "string",
"value": null "value": null
}, },
@ -208,29 +230,38 @@
"value": [] "value": []
}, },
{ {
"field": "collectedfromid", "field": "inferred",
"type": "string", "type": "boolean",
"value": "openaire____::SnVybmFsIEZha3VsdGFzIFNhc3RyYSBVbml2ZXJzaXRhcyBFa2FzYWt0aQ==" "value": false
}, },
{ {
"field": "collectedfromname", "field": "deletedbyinference",
"type": "string", "type": "boolean",
"value": "Jurnal Fakultas Sastra Universitas Ekasakti" "value": false
}, },
{ {
"field": "datasourcetype", "field": "trust",
"type": "string", "type": "double",
"value": "pubsrepository::journal@@@dnet:datasource_typologies" "value": 0.9
}, },
{ {
"field": "datasourcetypeui", "field": "inferenceprovenance",
"type": "string", "type": "string",
"value": "pubsrepository::journal@@@dnet:datasource_typologies_ui" "value": null
}, },
{ {
"field": "provenanceaction", "field": "dateofcollection",
"type": "not_used", "type": "date",
"value": "sysimport:crosswalk:entityregistry@@@dnet:provenance_actions" "value": "2020-01-21"
},
{
"field": "collectedfrom",
"type": "array",
"value": [
"openaire____::fairsharing@@@FAIRsharing.org",
"openaire____::opendoar@@@OpenDOAR",
"openaire____::re3data@@@Registry of Research Data Repository"
]
}, },
{ {
"field": "issnPrinted", "field": "issnPrinted",
@ -247,6 +278,20 @@
"type": "string", "type": "string",
"value": "2579-5447" "value": "2579-5447"
}, },
{
"field": "researchentitytypes",
"type": "array",
"value": [
"Research Data"
]
},
{
"field": "providedproducttypes",
"type": "array",
"value": [
]
},
{ {
"field": "jurisdiction", "field": "jurisdiction",
"type": "string", "type": "string",
@ -266,7 +311,32 @@
"field": "contentpolicies", "field": "contentpolicies",
"type": "array", "type": "array",
"value": [ "value": [
"Journal article@@@eosc:contentpolicies" "Taxonomic classification@@@eosc:contentpolicies",
"Resource collection@@@eosc:contentpolicies"
]
},
{
"field": "submissionpolicyurl",
"type": "string",
"value": null
},
{
"field": "preservationpolicyurl",
"type": "string",
"value": "Permanent Archiving https://datadryad.org/stash/faq"
},
{
"field": "researchproductaccesspolicies",
"type": "array",
"value": [
"https://100percentit.com/legal/"
]
},
{
"field": "researchproductmetadataaccesspolicies",
"type": "array",
"value": [
"https://wenmr.science.uu.nl/conditions"
] ]
}, },
{ {
@ -283,5 +353,10 @@
"field": "consenttermsofusedate", "field": "consenttermsofusedate",
"type": "date", "type": "date",
"value": "2022-03-11" "value": "2022-03-11"
},
{
"field": "lastconsenttermsofusedate",
"type": "date",
"value": "2022-03-11"
} }
] ]

6
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
View File

@ -695,12 +695,6 @@ public class XmlRecordFactory implements Serializable {
XmlSerializationUtils XmlSerializationUtils
.asXmlElement("citationguidelineurl", ds.getCitationguidelineurl().getValue())); .asXmlElement("citationguidelineurl", ds.getCitationguidelineurl().getValue()));
} }
if (ds.getQualitymanagementkind() != null) {
metadata
.add(
XmlSerializationUtils
.asXmlElement("qualitymanagementkind", ds.getQualitymanagementkind().getValue()));
}
if (ds.getPidsystems() != null) { if (ds.getPidsystems() != null) {
metadata metadata
.add(XmlSerializationUtils.asXmlElement("pidsystems", ds.getPidsystems().getValue())); .add(XmlSerializationUtils.asXmlElement("pidsystems", ds.getPidsystems().getValue()));

2
pom.xml
View File

@ -801,7 +801,7 @@
<mockito-core.version>3.3.3</mockito-core.version> <mockito-core.version>3.3.3</mockito-core.version>
<mongodb.driver.version>3.4.2</mongodb.driver.version> <mongodb.driver.version>3.4.2</mongodb.driver.version>
<vtd.version>[2.12,3.0)</vtd.version> <vtd.version>[2.12,3.0)</vtd.version>
<dhp-schemas.version>[2.10.32]</dhp-schemas.version> <dhp-schemas.version>[2.11.34-eosc-SNAPSHOT]</dhp-schemas.version>
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version> <dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version> <dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version> <dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>