From e91f06f39bf38016c1d8565d53ff5e853afcc76c Mon Sep 17 00:00:00 2001 From: Antonis Lempesis Date: Tue, 21 Dec 2021 15:54:38 +0200 Subject: [PATCH] fixed typos in indicators. Added extra views in monitor --- .../scripts/step16-createIndicatorsTables.sql | 336 ++++-------------- .../scripts/step20-createMonitorDB.sql | 6 +- 2 files changed, 79 insertions(+), 263 deletions(-) mode change 100644 => 100755 dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql old mode 100644 new mode 100755 index 3b1a7eeaf..bdd681f8d --- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql +++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql @@ -1,28 +1,29 @@ +---- Sprint 1 ---- create table indi_pub_green_oa stored as parquet as -select distinct p.id, coalesce(green_oa, 0) as green_oa +select distinct p.id, coalesce(green_oa, 0) as green_oa from publication p -left outer join ( -select p.id, 1 as green_oa +left outer join ( +select p.id, 1 as green_oa from publication p join result_instance ri on ri.id = p.id join datasource on datasource.id = ri.hostedby where datasource.type like '%Repository%' -and (ri.accessright = 'Open Access' -or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp +and (ri.accessright = 'Open Access' +or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp on p.id= tmp.id; create table indi_pub_grey_lit stored as parquet as select distinct p.id, coalesce(grey_lit, 0) as grey_lit from publication p left outer join ( -select p.id, 1 as grey_lit +select p.id, 1 as grey_lit from publication p join result_classifications rt on rt.id = p.id -where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and +where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and not exists (select 1 from result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id; create table indi_pub_doi_from_crossref stored as parquet as -select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref +select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref from publication p left outer join (select ri.id, 1 as doi_from_crossref from result_instance ri @@ -33,7 +34,7 @@ on tmp.id=p.id; create table indi_pub_gold_oa stored as parquet as select distinct p.id, coalesce(gold_oa, 0) as gold_oa from publication p -left outer join ( +left outer join ( select p.id, 1 as gold_oa from publication p join result_instance ri on ri.id = p.id @@ -41,255 +42,56 @@ join datasource on datasource.id = ri.hostedby where datasource.id like '%doajarticles%') tmp on p.id= tmp.id; ---create table indi_project_pubs_count stored as parquet as ---select pr.id id, count(p.id) total_pubs from project_results pr ---join publication p on p.id=pr.result ---group by pr.id; - ---create table indi_project_datasets_count stored as parquet as ---select pr.id id, count(d.id) total_datasets from project_results pr ---join dataset d on d.id=pr.result ---group by pr.id; - ---create table indi_project_software_count stored as parquet as ---select pr.id id, count(s.id) total_software from project_results pr ---join software s on s.id=pr.result ---group by pr.id; - ---create table indi_project_otherresearch_count stored as parquet as ---select pr.id id, count(o.id) total_other from project_results pr ---join otherresearchproduct o on o.id=pr.result ---group by pr.id; - ---create table indi_pub_avg_year_country_oa stored as parquet as ---select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, ---round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA - --from - --(SELECT year, country, SUM(CASE - --WHEN bestlicence='Open Access' THEN 1 - --ELSE 0 - --END) AS OpenAccess, SUM(CASE - --WHEN bestlicence<>'Open Access' THEN 1 - --ELSE 0 - --END) AS NonOpenAccess - --FROM publication p - --join result_organization ro on p.id=ro.id - --join organization o on o.id=ro.organization - --where cast(year as int)>=2003 and cast(year as int)<=2021 - --group by year, country) tmp; - ---create table indi_dataset_avg_year_country_oa stored as parquet as ---select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, ---round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA ---from - --(SELECT year, country, SUM(CASE - --WHEN bestlicence='Open Access' THEN 1 - --ELSE 0 - --END) AS OpenAccess, SUM(CASE - --WHEN bestlicence<>'Open Access' THEN 1 - --ELSE 0 - --END) AS NonOpenAccess - --FROM dataset d - --join result_organization ro on d.id=ro.id - --join organization o on o.id=ro.organization - --where cast(year as int)>=2003 and cast(year as int)<=2021 - --group by year, country) tmp; - ---create table indi_software_avg_year_country_oa stored as parquet as ---select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, ---round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA ---from --- (SELECT year, country, SUM(CASE - --WHEN bestlicence='Open Access' THEN 1 --- ELSE 0 ---END) AS OpenAccess, SUM(CASE --- WHEN bestlicence<>'Open Access' THEN 1 --- ELSE 0 --- END) AS NonOpenAccess --- FROM software s --- join result_organization ro on s.id=ro.id --- join organization o on o.id=ro.organization --- where cast(year as int)>=2003 and cast(year as int)<=2021 --- group by year, country) tmp; - - ---create table indi_other_avg_year_country_oa stored as parquet as ---select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, ---round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA --- from --- (SELECT year, country, SUM(CASE --- WHEN bestlicence='Open Access' THEN 1 --- ELSE 0 --- END) AS OpenAccess, SUM(CASE --- WHEN bestlicence<>'Open Access' THEN 1 --- ELSE 0 --- END) AS NonOpenAccess --- FROM otherresearchproduct orp --- join result_organization ro on orp.id=ro.id --- join organization o on o.id=ro.organization --- where cast(year as int)>=2003 and cast(year as int)<=2021 --- group by year, country) tmp; - ---create table indi_pub_avg_year_context_oa stored as parquet as ---with total as ---(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from publication_concepts pc ---join context c on pc.concept like concat('%',c.id,'%') ---join publication p on p.id=pc.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by c.name, year ) ---select year, name, round(no_of_pubs/total*100,3) averageofpubs ---from total; - ---create table indi_dataset_avg_year_context_oa stored as parquet as ---with total as ---(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from dataset_concepts pc ---join context c on pc.concept like concat('%',c.id,'%') ---join dataset p on p.id=pc.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by c.name, year ) ---select year, name, round(no_of_pubs/total*100,3) averageofdataset ---from total; - ---create table indi_software_avg_year_context_oa stored as parquet as ---with total as ---(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from software_concepts pc ---join context c on pc.concept like concat('%',c.id,'%') ---join software p on p.id=pc.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by c.name, year ) ---select year, name, round(no_of_pubs/total*100,3) averageofsoftware ---from total; - ---create table indi_other_avg_year_context_oa stored as parquet as ---with total as ---(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from otherresearchproduct_concepts pc ---join context c on pc.concept like concat('%',c.id,'%') ---join otherresearchproduct p on p.id=pc.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by c.name, year ) ---select year, name, round(no_of_pubs/total*100,3) averageofother ---from total; - ---create table indi_other_avg_year_content_oa stored as parquet as ---with total as ---(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total ---from otherresearchproduct_datasources pd ---join datasource d on datasource=d.id ---join otherresearchproduct p on p.id=pd.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by d.type, year) ---select year, type, round(no_of_pubs/total*100,3) averageOfOtherresearchproduct ---from total; - ---create table indi_software_avg_year_content_oa stored as parquet as ---with total as ---(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total ---from software_datasources pd ---join datasource d on datasource=d.id ---join software p on p.id=pd.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by d.type, year) ---select year, type, round(no_of_pubs/total*100,3) averageOfSoftware ---from total; - ---create table indi_dataset_avg_year_content_oa stored as parquet as ---with total as ---(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total ---from dataset_datasources pd ---join datasource d on datasource=d.id ---join dataset p on p.id=pd.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by d.type, year) ---select year, type, round(no_of_pubs/total*100,3) averageOfDatasets ---from total; - ---create table indi_pub_avg_year_content_oa stored as parquet as ---with total as ---(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total ---from publication_datasources pd ---join datasource d on datasource=d.id ---join publication p on p.id=pd.id ---where cast(year as int)>=2003 and cast(year as int)<=2021 ---group by d.type, year) ---select year, type, round(no_of_pubs/total*100,3) averageOfPubs ---from total; - -create table indi_pub_has_cc_licence stored as parquet as -select distinct p.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license -from publication p -left outer join (select p.id, license.type as lic from publication p -join publication_licenses as license on license.id = p.id +---- Sprint 2 ---- +create table indi_result_has_cc_licence stored as parquet as +select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license +from result r +left outer join (select r.id, license.type as lic from result r +join result_licenses as license on license.id = r.id where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp -on p.id= tmp.id; +on r.id= tmp.id; -create table indi_pub_has_cc_licence_url stored as parquet as -select distinct p.id, (case when lic_host='' or lic_host is null then 0 else 1 end) as has_cc_license_url -from publication p -left outer join (select p.id, lower(parse_url(license.type, "HOST")) as lic_host -from publication p -join publication_licenses as license on license.id = p.id -WHERE lower(parse_url(license.type, 'HOST')) = 'creativecommons.org') tmp -on p.id= tmp.id; - --- EOSC-TR1.1-02M: --- ## Indicator: has_cc_license. Creative Commons licensing has become a --- de facto standard in scholarly communication and is promoted by many initiatives --- like Plan S. This indicator might be only useful when applied --- to openly available publications. ---create table indi_pub_has_cc_licence_tr stored as parquet as ---select distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_tr ---from publication p ---left outer join (select p.id, license.type as lic from publication p ---join publication_licenses as license on license.id = p.id ---where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp ---on p.id= tmp.id - --- #EOSC-F2-01M_cc Rich metadata for scholarly publications --- ## Indicator: has_cc_license. Creative Commons licensing has become a --- de facto standard in scholarly communication and is promoted by many initiatives --- like Plan S. This indicator might be only useful when applied --- to openly available publications. - --- Same indicator as EOSC-TR1.1-02M (Najko's instructions) --- create table indi_pub_has_cc_licence_f stored as parquet as --- select --- distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_f --- from publication p --- left outer join (selectp.id,license.type as lic from publication p --- join publication_licenses as license on license.id = p.id --- where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp --- on p.id= tmp.id +create table indi_result_has_cc_licence_url stored as parquet as +select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url +from result r +left outer join (select r.id, lower(parse_url(license.type, "HOST")) as lic_host +from result r +join result_licenses as license on license.id = r.id +WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp +on r.id= tmp.id; create table indi_pub_has_abstract stored as parquet as select distinct publication.id, coalesce(abstract, 1) has_abstract from publication; -create table indi_result_with_orcid stored as parquet as +create table indi_result_with_orcid stored as parquet as select distinct r.id, coalesce(has_orcid, 0) as has_orcid -from result r -left outer join (select id, 1 as has_orcid from result_orcid) tmp -on r.id= tmp.id +from result r +left outer join (select id, 1 as has_orcid from result_orcid) tmp +on r.id= tmp.id; -create table indi_funded_result_with_fundref stored as parquet as + +---- Sprint 3 ---- +create table indi_funded_result_with_fundref stored as parquet as select distinct r.id, coalesce(fundref, 0) as fundref -from project_results r +from project_results r left outer join (select distinct id, 1 as fundref from project_results -where provenance='Harvested') tmp -on r.id= tmp.id +where provenance='Harvested') tmp +on r.id= tmp.id; -create table indi_result_org_country_collab stored as parquet as -with tmp as +create table indi_result_org_country_collab stored as parquet as +with tmp as (select o.id as id, o.country , ro.id as result,r.type from organization o join result_organization ro on o.id=ro.organization join result r on r.id=ro.id where o.country <> 'UNKNOWN') select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations from tmp as o1 join tmp as o2 on o1.result=o2.result -where o1.id<>o2.id and o1.country<>o2.country -group by o1.id, o1.type,o2.country +where o1.id<>o2.id and o1.country<>o2.country +group by o1.id, o1.type,o2.country; -create table indi_result_org_collab stored as parquet as -with tmp as +create table indi_result_org_collab stored as parquet as +with tmp as (select o.id, ro.id as result,r.type from organization o join result_organization ro on o.id=ro.organization join result r on r.id=ro.id) @@ -297,66 +99,82 @@ select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaboratio from tmp as o1 join tmp as o2 on o1.result=o2.result where o1.id<>o2.id -group by o1.id, o2.id, o1.type +group by o1.id, o2.id, o1.type; -create table indi_funder_country_collab stored as parquet as -with tmp as (select funder, project, country from organization_projects op -join organization o on o.id=op.id -join project p on p.id=op.project +create table indi_funder_country_collab stored as parquet as +with tmp as (select funder, project, country from organization_projects op +join organization o on o.id=op.id +join project p on p.id=op.project where country <> 'UNKNOWN') -select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations +select f1.funder, f1.country, f2.country, count(distinct f1.project) as collaborations from tmp as f1 join tmp as f2 on f1.project=f2.project -where f1.country<>f2.country -group by f1.funder, f2.country, f1.country +where f1.country<>f2.country +group by f1.funder, f2.country, f1.country; +create table indi_result_country_collab stored as parquet as +with tmp as +(select country, ro.id as result,r.type from organization o +join result_organization ro on o.id=ro.organization +join result r on r.id=ro.id) +select o1.country country1, o2.country country2, o1.type, count(distinct o1.result) as collaborations +from tmp as o1 +join tmp as o2 on o1.result=o2.result +where o1.country<>o2.country +group by o1.country, o2.country, o1.type; + +---- Sprint 4 ---- create table indi_pub_diamond stored as parquet as -select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal +select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal from publication_datasources pd left outer join ( select pd.id, 1 as in_diamond_journal from publication_datasources pd join datasource d on d.id=pd.datasource join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp -on pd.id=tmp.id +on pd.id=tmp.id; create table indi_pub_hybrid stored as parquet as -select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid +select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid from publication_datasources pd left outer join ( select pd.id, 1 as is_hybrid from publication_datasources pd join datasource d on d.id=pd.datasource join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) and (ps.journal_is_in_doaj=false and ps.journal_is_oa=false)) tmp -on pd.id=tmp.id +on pd.id=tmp.id; create table indi_is_gold_oa stored as parquet as -(select distinct pd.id, coalesce(gold_oa, 0) as gold_oa +(select distinct pd.id, coalesce(gold_oa, 0) as gold_oa from publication_datasources pd left outer join ( select pd.id, 1 as gold_oa from publication_datasources pd join datasource d on d.id=pd.datasource join stats_ext.plan_s_jn ps on (ps.issn_print=d.issn_printed or ps.issn_online=d.issn_online) where ps.journal_is_in_doaj is true or ps.journal_is_oa is true) tmp -on pd.id=tmp.id) - +on pd.id=tmp.id); create table indi_pub_in_transformative stored as parquet as -select distinct pd.id, coalesce(is_transformative, 0) as is_transformative +select distinct pd.id, coalesce(is_transformative, 0) as is_transformative from publication pd left outer join ( select pd.id, 1 as is_transformative from publication_datasources pd join datasource d on d.id=pd.datasource join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) and ps.is_transformative_journal=true) tmp -on pd.id=tmp.id +on pd.id=tmp.id; create table indi_pub_closed_other_open stored as parquet as select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from result_instance ri -left outer join +left outer join (select ri.id, 1 as pub_closed_other_open from result_instance ri join publication p on p.id=ri.id join datasource d on ri.hostedby=d.id where d.type like '%Journal%' and ri.accessright='Closed Access' and -(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp -on tmp.id=ri.id \ No newline at end of file +(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp +on tmp.id=ri.id; + + +---- Sprint 5 ---- +create table indi_result_no_of_copies stored as parquet as +select id, count(id) as number_of_copies from result_instance group by id; \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql index 2d6ff41d4..9bd90aa1f 100644 --- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql +++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql @@ -52,7 +52,8 @@ compute stats TARGET.result_languages; create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id); compute stats TARGET.result_licenses; -create table TARGET.licenses_normalized as select * from SOURCE.licenses_normalized; +create table TARGET.licenses_normalized stored as parquet as select * from SOURCE.licenses_normalized orig where exists (select 1 from TARGET.result r where r.id=orig.id); +compute stats TARGET.licenses_normalized; create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id); compute stats TARGET.result_oids; @@ -141,9 +142,6 @@ compute stats TARGET.indi_pub_closed_other_open; create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id); compute stats TARGET.indi_result_no_of_copies; ---- Usage statistics -create table TARGET.usage_stats stored as parquet as select * from SOURCE.usage_stats orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); - --denorm alter table TARGET.result rename to TARGET.res_tmp;