Separated impala from hive steps
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parent
de49173420
commit
e6f50de6ef
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@ -0,0 +1,6 @@
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-- datasource sources:
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-- where the datasource info have been collected from.
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create table if not exists ${stats_db_name}.datasource_sources AS
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select substr(d.id,4) as id, substr(cf.key, 4) as datasource
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from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
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where d.datainfo.deletedbyinference=false;
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@ -2,7 +2,6 @@
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-- Shortcuts for various definitions in stats db ---
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-- Shortcuts for various definitions in stats db ---
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----------------------------------------------------
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----------------------------------------------------
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-- Peer reviewed:
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-- Peer reviewed:
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-- Results that have been collected from Crossref
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-- Results that have been collected from Crossref
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create table ${stats_db_name}.result_peerreviewed as
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create table ${stats_db_name}.result_peerreviewed as
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@ -74,60 +73,4 @@ join ${stats_db_name}.result_datasources rd on rd.id=r.id
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join ${stats_db_name}.datasource d on d.id=rd.datasource
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join ${stats_db_name}.datasource d on d.id=rd.datasource
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join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
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join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
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join ${stats_db_name}.organization o on o.id=dor.organization
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join ${stats_db_name}.organization o on o.id=dor.organization
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where o.country is not null and o.country!='';
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where o.country is not null and o.country!='';
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-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
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-- peer reviewed)
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drop table if exists ${stats_db_name}.result_tmp;
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CREATE TABLE result_tmp (
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id STRING,
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title STRING,
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publisher STRING,
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journal STRING,
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`date` STRING,
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`year` INT,
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bestlicence STRING,
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access_mode STRING,
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embargo_end_date STRING,
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delayed BOOLEAN,
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authors INT,
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source STRING,
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abstract BOOLEAN,
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type STRING ,
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peer_reviewed BOOLEAN,
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green BOOLEAN,
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gold BOOLEAN)
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clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.publication r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.dataset r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.software r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.otherresearchproduct r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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drop table if exists ${stats_db_name}.result;
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drop view if exists ${stats_db_name}.result;
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create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
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drop table ${stats_db_name}.result_tmp;
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@ -0,0 +1,55 @@
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-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
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-- peer reviewed)
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drop table if exists ${stats_db_name}.result_tmp;
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CREATE TABLE result_tmp (
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id STRING,
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title STRING,
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publisher STRING,
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journal STRING,
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`date` STRING,
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`year` INT,
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bestlicence STRING,
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access_mode STRING,
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embargo_end_date STRING,
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delayed BOOLEAN,
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authors INT,
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source STRING,
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abstract BOOLEAN,
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type STRING ,
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peer_reviewed BOOLEAN,
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green BOOLEAN,
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gold BOOLEAN)
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clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.publication r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.dataset r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.software r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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insert into ${stats_db_name}.result_tmp
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select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
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FROM ${stats_db_name}.otherresearchproduct r
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LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
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LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
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drop table if exists ${stats_db_name}.result;
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drop view if exists ${stats_db_name}.result;
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create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
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drop table ${stats_db_name}.result_tmp;
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@ -4,7 +4,7 @@
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----------------------------------------------------------------
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----------------------------------------------------------------
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----------------------------------------------------------------
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----------------------------------------------------------------
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DROP TABLE IF EXISTS ${stats_db_name}.organization;
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DROP TABLE IF EXISTS ${stats_db_name}.organization;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname as legalshortname, o.country.classid as country
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
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FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
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FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
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CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
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CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
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<param>stats_db_name=${stats_db_name}</param>
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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</hive2>
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<ok to="Step15_5"/>
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<error to="Kill"/>
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</action>
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<action name="Step15_5">
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<hive2 xmlns="uri:oozie:hive2-action:0.1">
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<jdbc-url>${hive_jdbc_url}</jdbc-url>
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<script>scripts/step15_5.sql</script>
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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<ok to="Step16"/>
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<ok to="Step16"/>
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<error to="Kill"/>
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<error to="Kill"/>
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</action>
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</action>
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<action name="Step16">
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<action name="Step16">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<exec>impala-shell.sh</exec>
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<argument>${stats_db_name}</argument>
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<argument>step16.sql</argument>
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<argument>/user/${wf:user()}/oa/graph/stats/oozie_app/scripts/step16.sql</argument>
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<file>impala-shell.sh</file>
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</shell>
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<ok to="Step16_5"/>
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<error to="Kill"/>
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</action>
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<action name="Step16_5">
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<hive2 xmlns="uri:oozie:hive2-action:0.1">
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<hive2 xmlns="uri:oozie:hive2-action:0.1">
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<jdbc-url>${hive_jdbc_url}</jdbc-url>
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<jdbc-url>${hive_jdbc_url}</jdbc-url>
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<script>scripts/step16.sql</script>
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<script>scripts/step16_5.sql</script>
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<param>stats_db_name=${stats_db_name}</param>
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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</hive2>
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