Merge branch 'beta' into beta_provision_relation

dhp-workflows/dhp-stats-hist-snaps/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-hist-snaps/oozie_app/copyDataToImpalaCluster.sh

@@ -67,24 +67,21 @@ function copydb() {
   if [ -n "$log_errors" ]; then
     echo -e "\n\nERROR: THERE WAS A PROBLEM WHEN DROPPING THE OLD DATABASE! EXITING...\n\n"
     rm -f error.log
-    return 1
+    exit 2
   fi
 
-  # Make Impala aware of the deletion of the old DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-
   echo -e "\n\nCopying files of '${db}', from Ocean to Impala cluster..\n"
-  # Using max-bandwidth of: 50 * 100 Mb/s = 5 Gb/s
+  # Using max-bandwidth of: 70 * 150 Mb/s = 10.5 Gb/s
-  # Using max memory of: 50 * 6144 = 300 Gb
+  # Using max memory of: 70 * 6144 = 430 Gb
   # Using 1MB as a buffer-size.
-  # The " -Ddistcp.dynamic.recordsPerChunk=50" arg is not available in our version of hadoop
+  # The " -Ddistcp.dynamic.recordsPerChunk=N" arg is not available in our version of hadoop
   # The "ug" args cannot be used as we get a "User does not belong to hive" error.
   # The "p" argument cannot be used, as it blocks the files from being used, giving a "sticky bit"-error, even after applying chmod and chown onm the files.
   hadoop distcp -Dmapreduce.map.memory.mb=6144 -m 70 -bandwidth 150 \
                 -numListstatusThreads 40 \
                 -copybuffersize 1048576 \
                 -strategy dynamic \
+                -blocksperchunk 8 \
                 -pb \
                 ${OCEAN_HDFS_NODE}/user/hive/warehouse/${db}.db ${IMPALA_HDFS_DB_BASE_PATH}
 
@@ -92,9 +89,9 @@ function copydb() {
   if [ $? -eq 0 ]; then
     echo -e "\nSuccessfully copied the files of '${db}'.\n"
   else
-    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT WITH EXIT STATUS: $?\n\n"
+    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT EXIT STATUS: $?\n\n"
     rm -f error.log
-    return 2
+    exit 3
   fi
 
   # In case we ever use this script for a writable DB (using inserts/updates), we should perform the following costly operation as well..
@@ -105,14 +102,11 @@ function copydb() {
   # create the new database (with the same name)
   impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create database ${db}"
 
-  # Make Impala aware of the creation of the new DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
   # Because "Hive" and "Impala" do not have compatible schemas, we cannot use the "show create table <name>" output from hive to create the exact same table in impala.
   # So, we have to find at least one parquet file (check if it's there) from the table in the ocean cluster for impala to use it to extract the table-schema itself from that file.
 
   all_create_view_statements=()
+  num_tables=0
 
   entities_on_ocean=`hive -e "show tables in ${db};" | sed 's/WARN:.*//g'`  # Get the tables and views without any potential the "WARN" logs.
   for i in ${entities_on_ocean[@]}; do # Use un-quoted values, as the elemetns are single-words.
@@ -129,9 +123,11 @@ function copydb() {
       all_create_view_statements+=("$create_view_statement")
     else
       echo -e "\n'${i}' is a table, so we will check for its parquet files and create the table on Impala cluster.\n"
+      ((num_tables++))
       CURRENT_PRQ_FILE=`hdfs dfs -conf ${IMPALA_CONFIG_FILE} -ls -C "${IMPALA_HDFS_DB_BASE_PATH}/${db}.db/${i}/" | grep -v 'Found' | grep -v '_impala_insert_staging' |  head -1`
       if [ -z "$CURRENT_PRQ_FILE" ]; then # If there is not parquet-file inside.
           echo -e "\nERROR: THE TABLE \"${i}\" HAD NO FILES TO GET THE SCHEMA FROM! IT'S EMPTY!\n\n"
+          exit 4 # Comment out when testing a DB which has such a table, just for performing this exact test-check.
       else
         impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create table ${db}.${i} like parquet '${CURRENT_PRQ_FILE}' stored as parquet;" |& tee error.log
         log_errors=`cat error.log | grep -E "WARN|ERROR|FAILED"`
@@ -142,74 +138,73 @@ function copydb() {
     fi
   done
 
-  echo -e "\nAll tables have been created, going to create the views..\n"
+  previous_num_of_views_to_retry=${#all_create_view_statements[@]}
+  if [[ $num_tables -gt 0 ]]; then
+    echo -e "\nAll ${num_tables} tables have been created, for db '${db}', going to create the ${previous_num_of_views_to_retry} views..\n"
+  else
+    echo -e "\nDB '${db}' does not have any tables, moving on to create the ${previous_num_of_views_to_retry} views..\n"
+  fi
 
-  # Time to loop through the views and create them.
-  # At this point all table-schemas should have been created.
-
-  previous_num_of_views_to_retry=${#all_create_view_statements}
   if [[ $previous_num_of_views_to_retry -gt 0 ]]; then
-    echo -e "\nAll_create_view_statements:\n\n${all_create_view_statements[@]}\n"  # DEBUG
+    echo -e "\nAll_create_view_statements (${previous_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"  # DEBUG
-    # Make Impala aware of the new tables, so it knows them when creating the views.
-    sleep 1
-    impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-    sleep 1
   else
     echo -e "\nDB '${db}' does not contain any views.\n"
   fi
 
   level_counter=0
-  while [[ ${#all_create_view_statements[@]} -gt 0 ]]; do
+  while [[ $previous_num_of_views_to_retry -gt 0 ]]; do
     ((level_counter++))
     # The only accepted reason for a view to not be created, is if it depends on another view, which has not been created yet.
     # In this case, we should retry creating this particular view again.
-    should_retry_create_view_statements=()
+    new_num_of_views_to_retry=0
 
     for create_view_statement in "${all_create_view_statements[@]}"; do # Here we use double quotes, as the elements are phrases, instead of single-words.
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "${create_view_statement}" |& tee error.log # impala-shell prints all logs in stderr, so wee need to capture them and put them in a file, in order to perform "grep" on them later
       specific_errors=`cat error.log | grep -E "FAILED: ParseException line 1:13 missing TABLE at 'view'|ERROR: AnalysisException: Could not resolve table reference:"`
       if [ -n "$specific_errors" ]; then
         echo -e "\nspecific_errors: ${specific_errors}\n"
-        echo -e "\nView '$(cat error.log | grep "CREATE VIEW " | sed 's/CREATE VIEW //g' | sed 's/ as select .*//g')' failed to be created, possibly because it depends on another view.\n"
+        echo -e "\nView '$(cat error.log | grep -Eo "Query: CREATE VIEW ([^\s]+)" | sed 's/Query: CREATE VIEW //g')' failed to be created, possibly because it depends on another view.\n"
-        should_retry_create_view_statements+=("$create_view_statement")
+        ((new_num_of_views_to_retry++)) # Increment it here, instead of acquiring the array's size in the end, as that doesn't work for some reason.
       else
+          all_create_view_statements=("${all_create_view_statements[@]/$create_view_statement}")  # Remove the current successful statement from the list.
           sleep 1 # Wait a bit for Impala to register that the view was created, before possibly referencing it by another view.
       fi
     done
 
-    new_num_of_views_to_retry=${#should_retry_create_view_statements}
+    all_create_view_statements=("$(echo "${all_create_view_statements[@]}" | grep -v '^[\s]*$')")  # Re-index the array, filtering-out any empty elements.
+    # Although the above command reduces the "active" elements to just the few to-be-retried, it does not manage to make the array return the its true size through the "${#all_create_view_statements[@]}" statement. So we use counters.
+
     if [[ $new_num_of_views_to_retry -eq $previous_num_of_views_to_retry ]]; then
       echo -e "\n\nERROR: THE NUMBER OF VIEWS TO RETRY HAS NOT BEEN REDUCED! THE SCRIPT IS LIKELY GOING TO AN INFINITE-LOOP! EXITING..\n\n"
-      return 3
+      exit 5
     elif [[ $new_num_of_views_to_retry -gt 0 ]]; then
-      echo -e "\nTo be retried \"create_view_statements\":\n\n${should_retry_create_view_statements[@]}\n"
+      echo -e "\nTo be retried \"create_view_statements\" (${new_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"
-      previous_num_of_views_to_retry=$new_num_of_views_to_retry
     else
       echo -e "\nFinished creating views, for db: '${db}', in level-${level_counter}.\n"
     fi
-    all_create_view_statements=("${should_retry_create_view_statement[@]}") # This is needed in any case to either move forward with the rest of the views or stop at 0 remaining views.
+    previous_num_of_views_to_retry=$new_num_of_views_to_retry
   done
 
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
-
   echo -e "\nComputing stats for tables..\n"
   entities_on_impala=`impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} --delimited -q "show tables in ${db}"`
   for i in ${entities_on_impala[@]}; do # Use un-quoted values, as the elemetns are single-words.
     # Taking the create table statement from the Ocean cluster, just to check if its a view, as the output is easier than using impala-shell from Impala cluster.
     create_view_statement=`hive -e "show create table ${db}.${i};" | grep "CREATE VIEW"`  # This grep works here, as we do not want to match multiple-lines.
     if [ -z "$create_view_statement" ]; then  # If it's a table, then go load the data to it.
+      # Invalidate metadata of this DB's tables, in order for Impala to be aware of all parquet files put inside the tables' directories, previously, by "hadoop distcp".
+      impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA ${db}.${i}"
+      sleep 1
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "compute stats ${db}.${i}";
     fi
   done
 
+  # Check if the entities in both clusters are the same, down to the exact names, not just the counts. (they are sorted in the same way both in hive and impala)
   if [ "${entities_on_impala[@]}" == "${entities_on_ocean[@]}" ]; then
     echo -e "\nAll entities have been copied to Impala cluster.\n"
   else
     echo -e "\n\nERROR: 1 OR MORE ENTITIES OF DB '${db}' FAILED TO BE COPIED TO IMPALA CLUSTER!\n\n"
     rm -f error.log
-    return 4
+    exit 6
   fi
 
   rm -f error.log

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/copyDataToImpalaCluster.sh

@@ -66,24 +66,21 @@ function copydb() {
   if [ -n "$log_errors" ]; then
     echo -e "\n\nERROR: THERE WAS A PROBLEM WHEN DROPPING THE OLD DATABASE! EXITING...\n\n"
     rm -f error.log
-    return 1
+    exit 2
   fi
 
-  # Make Impala aware of the deletion of the old DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-
   echo -e "\n\nCopying files of '${db}', from Ocean to Impala cluster..\n"
-  # Using max-bandwidth of: 50 * 100 Mb/s = 5 Gb/s
+  # Using max-bandwidth of: 70 * 150 Mb/s = 10.5 Gb/s
-  # Using max memory of: 50 * 6144 = 300 Gb
+  # Using max memory of: 70 * 6144 = 430 Gb
   # Using 1MB as a buffer-size.
-  # The " -Ddistcp.dynamic.recordsPerChunk=50" arg is not available in our version of hadoop
+  # The " -Ddistcp.dynamic.recordsPerChunk=N" arg is not available in our version of hadoop
   # The "ug" args cannot be used as we get a "User does not belong to hive" error.
   # The "p" argument cannot be used, as it blocks the files from being used, giving a "sticky bit"-error, even after applying chmod and chown onm the files.
   hadoop distcp -Dmapreduce.map.memory.mb=6144 -m 70 -bandwidth 150 \
                 -numListstatusThreads 40 \
                 -copybuffersize 1048576 \
                 -strategy dynamic \
+                -blocksperchunk 8 \
                 -pb \
                 ${OCEAN_HDFS_NODE}/user/hive/warehouse/${db}.db ${IMPALA_HDFS_DB_BASE_PATH}
 
@@ -91,9 +88,9 @@ function copydb() {
   if [ $? -eq 0 ]; then
     echo -e "\nSuccessfully copied the files of '${db}'.\n"
   else
-    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT WITH EXIT STATUS: $?\n\n"
+    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT EXIT STATUS: $?\n\n"
     rm -f error.log
-    return 2
+    exit 3
   fi
 
   # In case we ever use this script for a writable DB (using inserts/updates), we should perform the following costly operation as well..
@@ -104,14 +101,11 @@ function copydb() {
   # create the new database (with the same name)
   impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create database ${db}"
 
-  # Make Impala aware of the creation of the new DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
   # Because "Hive" and "Impala" do not have compatible schemas, we cannot use the "show create table <name>" output from hive to create the exact same table in impala.
   # So, we have to find at least one parquet file (check if it's there) from the table in the ocean cluster for impala to use it to extract the table-schema itself from that file.
 
   all_create_view_statements=()
+  num_tables=0
 
   entities_on_ocean=`hive -e "show tables in ${db};" | sed 's/WARN:.*//g'`  # Get the tables and views without any potential the "WARN" logs.
   for i in ${entities_on_ocean[@]}; do # Use un-quoted values, as the elemetns are single-words.
@@ -128,9 +122,11 @@ function copydb() {
       all_create_view_statements+=("$create_view_statement")
     else
       echo -e "\n'${i}' is a table, so we will check for its parquet files and create the table on Impala cluster.\n"
+      ((num_tables++))
       CURRENT_PRQ_FILE=`hdfs dfs -conf ${IMPALA_CONFIG_FILE} -ls -C "${IMPALA_HDFS_DB_BASE_PATH}/${db}.db/${i}/" | grep -v 'Found' | grep -v '_impala_insert_staging' |  head -1`
       if [ -z "$CURRENT_PRQ_FILE" ]; then # If there is not parquet-file inside.
           echo -e "\nERROR: THE TABLE \"${i}\" HAD NO FILES TO GET THE SCHEMA FROM! IT'S EMPTY!\n\n"
+          exit 4 # Comment out when testing a DB which has such a table, just for performing this exact test-check.
       else
         impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create table ${db}.${i} like parquet '${CURRENT_PRQ_FILE}' stored as parquet;" |& tee error.log
         log_errors=`cat error.log | grep -E "WARN|ERROR|FAILED"`
@@ -141,74 +137,73 @@ function copydb() {
     fi
   done
 
-  echo -e "\nAll tables have been created, going to create the views..\n"
+  previous_num_of_views_to_retry=${#all_create_view_statements[@]}
+  if [[ $num_tables -gt 0 ]]; then
+    echo -e "\nAll ${num_tables} tables have been created, for db '${db}', going to create the ${previous_num_of_views_to_retry} views..\n"
+  else
+    echo -e "\nDB '${db}' does not have any tables, moving on to create the ${previous_num_of_views_to_retry} views..\n"
+  fi
 
-  # Time to loop through the views and create them.
-  # At this point all table-schemas should have been created.
-
-  previous_num_of_views_to_retry=${#all_create_view_statements}
   if [[ $previous_num_of_views_to_retry -gt 0 ]]; then
-    echo -e "\nAll_create_view_statements:\n\n${all_create_view_statements[@]}\n"  # DEBUG
+    echo -e "\nAll_create_view_statements (${previous_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"  # DEBUG
-    # Make Impala aware of the new tables, so it knows them when creating the views.
-    sleep 1
-    impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-    sleep 1
   else
     echo -e "\nDB '${db}' does not contain any views.\n"
   fi
 
   level_counter=0
-  while [[ ${#all_create_view_statements[@]} -gt 0 ]]; do
+  while [[ $previous_num_of_views_to_retry -gt 0 ]]; do
     ((level_counter++))
     # The only accepted reason for a view to not be created, is if it depends on another view, which has not been created yet.
     # In this case, we should retry creating this particular view again.
-    should_retry_create_view_statements=()
+    new_num_of_views_to_retry=0
 
     for create_view_statement in "${all_create_view_statements[@]}"; do # Here we use double quotes, as the elements are phrases, instead of single-words.
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "${create_view_statement}" |& tee error.log # impala-shell prints all logs in stderr, so wee need to capture them and put them in a file, in order to perform "grep" on them later
       specific_errors=`cat error.log | grep -E "FAILED: ParseException line 1:13 missing TABLE at 'view'|ERROR: AnalysisException: Could not resolve table reference:"`
       if [ -n "$specific_errors" ]; then
         echo -e "\nspecific_errors: ${specific_errors}\n"
-        echo -e "\nView '$(cat error.log | grep "CREATE VIEW " | sed 's/CREATE VIEW //g' | sed 's/ as select .*//g')' failed to be created, possibly because it depends on another view.\n"
+        echo -e "\nView '$(cat error.log | grep -Eo "Query: CREATE VIEW ([^\s]+)" | sed 's/Query: CREATE VIEW //g')' failed to be created, possibly because it depends on another view.\n"
-        should_retry_create_view_statements+=("$create_view_statement")
+        ((new_num_of_views_to_retry++)) # Increment it here, instead of acquiring the array's size in the end, as that doesn't work for some reason.
       else
+          all_create_view_statements=("${all_create_view_statements[@]/$create_view_statement}")  # Remove the current successful statement from the list.
           sleep 1 # Wait a bit for Impala to register that the view was created, before possibly referencing it by another view.
       fi
     done
 
-    new_num_of_views_to_retry=${#should_retry_create_view_statements}
+    all_create_view_statements=("$(echo "${all_create_view_statements[@]}" | grep -v '^[\s]*$')")  # Re-index the array, filtering-out any empty elements.
+    # Although the above command reduces the "active" elements to just the few to-be-retried, it does not manage to make the array return the its true size through the "${#all_create_view_statements[@]}" statement. So we use counters.
+
     if [[ $new_num_of_views_to_retry -eq $previous_num_of_views_to_retry ]]; then
       echo -e "\n\nERROR: THE NUMBER OF VIEWS TO RETRY HAS NOT BEEN REDUCED! THE SCRIPT IS LIKELY GOING TO AN INFINITE-LOOP! EXITING..\n\n"
-      return 3
+      exit 5
     elif [[ $new_num_of_views_to_retry -gt 0 ]]; then
-      echo -e "\nTo be retried \"create_view_statements\":\n\n${should_retry_create_view_statements[@]}\n"
+      echo -e "\nTo be retried \"create_view_statements\" (${new_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"
-      previous_num_of_views_to_retry=$new_num_of_views_to_retry
     else
       echo -e "\nFinished creating views, for db: '${db}', in level-${level_counter}.\n"
     fi
-    all_create_view_statements=("${should_retry_create_view_statement[@]}") # This is needed in any case to either move forward with the rest of the views or stop at 0 remaining views.
+    previous_num_of_views_to_retry=$new_num_of_views_to_retry
   done
 
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
-
   echo -e "\nComputing stats for tables..\n"
   entities_on_impala=`impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} --delimited -q "show tables in ${db}"`
   for i in ${entities_on_impala[@]}; do # Use un-quoted values, as the elemetns are single-words.
     # Taking the create table statement from the Ocean cluster, just to check if its a view, as the output is easier than using impala-shell from Impala cluster.
     create_view_statement=`hive -e "show create table ${db}.${i};" | grep "CREATE VIEW"`  # This grep works here, as we do not want to match multiple-lines.
     if [ -z "$create_view_statement" ]; then  # If it's a table, then go load the data to it.
+      # Invalidate metadata of this DB's tables, in order for Impala to be aware of all parquet files put inside the tables' directories, previously, by "hadoop distcp".
+      impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA ${db}.${i}"
+      sleep 1
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "compute stats ${db}.${i}";
     fi
   done
 
+  # Check if the entities in both clusters are the same, down to the exact names, not just the counts. (they are sorted in the same way both in hive and impala)
   if [ "${entities_on_impala[@]}" == "${entities_on_ocean[@]}" ]; then
     echo -e "\nAll entities have been copied to Impala cluster.\n"
   else
     echo -e "\n\nERROR: 1 OR MORE ENTITIES OF DB '${db}' FAILED TO BE COPIED TO IMPALA CLUSTER!\n\n"
     rm -f error.log
-    return 4
+    exit 6
   fi
 
   rm -f error.log

dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh

@@ -66,24 +66,21 @@ function copydb() {
   if [ -n "$log_errors" ]; then
     echo -e "\n\nERROR: THERE WAS A PROBLEM WHEN DROPPING THE OLD DATABASE! EXITING...\n\n"
     rm -f error.log
-    return 1
+    exit 2
   fi
 
-  # Make Impala aware of the deletion of the old DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-
   echo -e "\n\nCopying files of '${db}', from Ocean to Impala cluster..\n"
-  # Using max-bandwidth of: 50 * 100 Mb/s = 5 Gb/s
+  # Using max-bandwidth of: 70 * 150 Mb/s = 10.5 Gb/s
-  # Using max memory of: 50 * 6144 = 300 Gb
+  # Using max memory of: 70 * 6144 = 430 Gb
   # Using 1MB as a buffer-size.
-  # The " -Ddistcp.dynamic.recordsPerChunk=50" arg is not available in our version of hadoop
+  # The " -Ddistcp.dynamic.recordsPerChunk=N" arg is not available in our version of hadoop
   # The "ug" args cannot be used as we get a "User does not belong to hive" error.
   # The "p" argument cannot be used, as it blocks the files from being used, giving a "sticky bit"-error, even after applying chmod and chown onm the files.
   hadoop distcp -Dmapreduce.map.memory.mb=6144 -m 70 -bandwidth 150 \
                 -numListstatusThreads 40 \
                 -copybuffersize 1048576 \
                 -strategy dynamic \
+                -blocksperchunk 8 \
                 -pb \
                 ${OCEAN_HDFS_NODE}/user/hive/warehouse/${db}.db ${IMPALA_HDFS_DB_BASE_PATH}
 
@@ -91,9 +88,9 @@ function copydb() {
   if [ $? -eq 0 ]; then
     echo -e "\nSuccessfully copied the files of '${db}'.\n"
   else
-    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT WITH EXIT STATUS: $?\n\n"
+    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT EXIT STATUS: $?\n\n"
     rm -f error.log
-    return 2
+    exit 3
   fi
 
   # In case we ever use this script for a writable DB (using inserts/updates), we should perform the following costly operation as well..
@@ -104,14 +101,11 @@ function copydb() {
   # create the new database (with the same name)
   impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create database ${db}"
 
-  # Make Impala aware of the creation of the new DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
   # Because "Hive" and "Impala" do not have compatible schemas, we cannot use the "show create table <name>" output from hive to create the exact same table in impala.
   # So, we have to find at least one parquet file (check if it's there) from the table in the ocean cluster for impala to use it to extract the table-schema itself from that file.
 
   all_create_view_statements=()
+  num_tables=0
 
   entities_on_ocean=`hive -e "show tables in ${db};" | sed 's/WARN:.*//g'`  # Get the tables and views without any potential the "WARN" logs.
   for i in ${entities_on_ocean[@]}; do # Use un-quoted values, as the elemetns are single-words.
@@ -128,9 +122,11 @@ function copydb() {
       all_create_view_statements+=("$create_view_statement")
     else
       echo -e "\n'${i}' is a table, so we will check for its parquet files and create the table on Impala cluster.\n"
+      ((num_tables++))
       CURRENT_PRQ_FILE=`hdfs dfs -conf ${IMPALA_CONFIG_FILE} -ls -C "${IMPALA_HDFS_DB_BASE_PATH}/${db}.db/${i}/" | grep -v 'Found' | grep -v '_impala_insert_staging' |  head -1`
       if [ -z "$CURRENT_PRQ_FILE" ]; then # If there is not parquet-file inside.
           echo -e "\nERROR: THE TABLE \"${i}\" HAD NO FILES TO GET THE SCHEMA FROM! IT'S EMPTY!\n\n"
+          exit 4 # Comment out when testing a DB which has such a table, just for performing this exact test-check.
       else
         impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create table ${db}.${i} like parquet '${CURRENT_PRQ_FILE}' stored as parquet;" |& tee error.log
         log_errors=`cat error.log | grep -E "WARN|ERROR|FAILED"`
@@ -141,74 +137,73 @@ function copydb() {
     fi
   done
 
-  echo -e "\nAll tables have been created, going to create the views..\n"
+  previous_num_of_views_to_retry=${#all_create_view_statements[@]}
+  if [[ $num_tables -gt 0 ]]; then
+    echo -e "\nAll ${num_tables} tables have been created, for db '${db}', going to create the ${previous_num_of_views_to_retry} views..\n"
+  else
+    echo -e "\nDB '${db}' does not have any tables, moving on to create the ${previous_num_of_views_to_retry} views..\n"
+  fi
 
-  # Time to loop through the views and create them.
-  # At this point all table-schemas should have been created.
-
-  previous_num_of_views_to_retry=${#all_create_view_statements}
   if [[ $previous_num_of_views_to_retry -gt 0 ]]; then
-    echo -e "\nAll_create_view_statements:\n\n${all_create_view_statements[@]}\n"  # DEBUG
+    echo -e "\nAll_create_view_statements (${previous_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"  # DEBUG
-    # Make Impala aware of the new tables, so it knows them when creating the views.
-    sleep 1
-    impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-    sleep 1
   else
     echo -e "\nDB '${db}' does not contain any views.\n"
   fi
 
   level_counter=0
-  while [[ ${#all_create_view_statements[@]} -gt 0 ]]; do
+  while [[ $previous_num_of_views_to_retry -gt 0 ]]; do
     ((level_counter++))
     # The only accepted reason for a view to not be created, is if it depends on another view, which has not been created yet.
     # In this case, we should retry creating this particular view again.
-    should_retry_create_view_statements=()
+    new_num_of_views_to_retry=0
 
     for create_view_statement in "${all_create_view_statements[@]}"; do # Here we use double quotes, as the elements are phrases, instead of single-words.
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "${create_view_statement}" |& tee error.log # impala-shell prints all logs in stderr, so wee need to capture them and put them in a file, in order to perform "grep" on them later
       specific_errors=`cat error.log | grep -E "FAILED: ParseException line 1:13 missing TABLE at 'view'|ERROR: AnalysisException: Could not resolve table reference:"`
       if [ -n "$specific_errors" ]; then
         echo -e "\nspecific_errors: ${specific_errors}\n"
-        echo -e "\nView '$(cat error.log | grep "CREATE VIEW " | sed 's/CREATE VIEW //g' | sed 's/ as select .*//g')' failed to be created, possibly because it depends on another view.\n"
+        echo -e "\nView '$(cat error.log | grep -Eo "Query: CREATE VIEW ([^\s]+)" | sed 's/Query: CREATE VIEW //g')' failed to be created, possibly because it depends on another view.\n"
-        should_retry_create_view_statements+=("$create_view_statement")
+        ((new_num_of_views_to_retry++)) # Increment it here, instead of acquiring the array's size in the end, as that doesn't work for some reason.
       else
+          all_create_view_statements=("${all_create_view_statements[@]/$create_view_statement}")  # Remove the current successful statement from the list.
           sleep 1 # Wait a bit for Impala to register that the view was created, before possibly referencing it by another view.
       fi
     done
 
-    new_num_of_views_to_retry=${#should_retry_create_view_statements}
+    all_create_view_statements=("$(echo "${all_create_view_statements[@]}" | grep -v '^[\s]*$')")  # Re-index the array, filtering-out any empty elements.
+    # Although the above command reduces the "active" elements to just the few to-be-retried, it does not manage to make the array return the its true size through the "${#all_create_view_statements[@]}" statement. So we use counters.
+
     if [[ $new_num_of_views_to_retry -eq $previous_num_of_views_to_retry ]]; then
       echo -e "\n\nERROR: THE NUMBER OF VIEWS TO RETRY HAS NOT BEEN REDUCED! THE SCRIPT IS LIKELY GOING TO AN INFINITE-LOOP! EXITING..\n\n"
-      return 3
+      exit 5
     elif [[ $new_num_of_views_to_retry -gt 0 ]]; then
-      echo -e "\nTo be retried \"create_view_statements\":\n\n${should_retry_create_view_statements[@]}\n"
+      echo -e "\nTo be retried \"create_view_statements\" (${new_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"
-      previous_num_of_views_to_retry=$new_num_of_views_to_retry
     else
       echo -e "\nFinished creating views, for db: '${db}', in level-${level_counter}.\n"
     fi
-    all_create_view_statements=("${should_retry_create_view_statement[@]}") # This is needed in any case to either move forward with the rest of the views or stop at 0 remaining views.
+    previous_num_of_views_to_retry=$new_num_of_views_to_retry
   done
 
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
-
   echo -e "\nComputing stats for tables..\n"
   entities_on_impala=`impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} --delimited -q "show tables in ${db}"`
   for i in ${entities_on_impala[@]}; do # Use un-quoted values, as the elemetns are single-words.
     # Taking the create table statement from the Ocean cluster, just to check if its a view, as the output is easier than using impala-shell from Impala cluster.
     create_view_statement=`hive -e "show create table ${db}.${i};" | grep "CREATE VIEW"`  # This grep works here, as we do not want to match multiple-lines.
     if [ -z "$create_view_statement" ]; then  # If it's a table, then go load the data to it.
+      # Invalidate metadata of this DB's tables, in order for Impala to be aware of all parquet files put inside the tables' directories, previously, by "hadoop distcp".
+      impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA ${db}.${i}"
+      sleep 1
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "compute stats ${db}.${i}";
     fi
   done
 
+  # Check if the entities in both clusters are the same, down to the exact names, not just the counts. (they are sorted in the same way both in hive and impala)
   if [ "${entities_on_impala[@]}" == "${entities_on_ocean[@]}" ]; then
     echo -e "\nAll entities have been copied to Impala cluster.\n"
   else
     echo -e "\n\nERROR: 1 OR MORE ENTITIES OF DB '${db}' FAILED TO BE COPIED TO IMPALA CLUSTER!\n\n"
     rm -f error.log
-    return 4
+    exit 6
   fi
 
   rm -f error.log

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/copyDataToImpalaCluster.sh

@@ -68,24 +68,21 @@ function copydb() {
   if [ -n "$log_errors" ]; then
     echo -e "\n\nERROR: THERE WAS A PROBLEM WHEN DROPPING THE OLD DATABASE! EXITING...\n\n"
     rm -f error.log
-    return 1
+    exit 2
   fi
 
-  # Make Impala aware of the deletion of the old DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-
   echo -e "\n\nCopying files of '${db}', from Ocean to Impala cluster..\n"
-  # Using max-bandwidth of: 50 * 100 Mb/s = 5 Gb/s
+  # Using max-bandwidth of: 70 * 150 Mb/s = 10.5 Gb/s
-  # Using max memory of: 50 * 6144 = 300 Gb
+  # Using max memory of: 70 * 6144 = 430 Gb
   # Using 1MB as a buffer-size.
-  # The " -Ddistcp.dynamic.recordsPerChunk=50" arg is not available in our version of hadoop
+  # The " -Ddistcp.dynamic.recordsPerChunk=N" arg is not available in our version of hadoop
   # The "ug" args cannot be used as we get a "User does not belong to hive" error.
   # The "p" argument cannot be used, as it blocks the files from being used, giving a "sticky bit"-error, even after applying chmod and chown onm the files.
   hadoop distcp -Dmapreduce.map.memory.mb=6144 -m 70 -bandwidth 150 \
                 -numListstatusThreads 40 \
                 -copybuffersize 1048576 \
                 -strategy dynamic \
+                -blocksperchunk 8 \
                 -pb \
                 ${OCEAN_HDFS_NODE}/user/hive/warehouse/${db}.db ${IMPALA_HDFS_DB_BASE_PATH}
 
@@ -93,9 +90,9 @@ function copydb() {
   if [ $? -eq 0 ]; then
     echo -e "\nSuccessfully copied the files of '${db}'.\n"
   else
-    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT WITH EXIT STATUS: $?\n\n"
+    echo -e "\n\nERROR: FAILED TO TRANSFER THE FILES OF '${db}', WITH 'hadoop distcp'. GOT EXIT STATUS: $?\n\n"
     rm -f error.log
-    return 2
+    exit 3
   fi
 
   # In case we ever use this script for a writable DB (using inserts/updates), we should perform the following costly operation as well..
@@ -106,14 +103,11 @@ function copydb() {
   # create the new database (with the same name)
   impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create database ${db}"
 
-  # Make Impala aware of the creation of the new DB immediately.
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
   # Because "Hive" and "Impala" do not have compatible schemas, we cannot use the "show create table <name>" output from hive to create the exact same table in impala.
   # So, we have to find at least one parquet file (check if it's there) from the table in the ocean cluster for impala to use it to extract the table-schema itself from that file.
 
   all_create_view_statements=()
+  num_tables=0
 
   entities_on_ocean=`hive -e "show tables in ${db};" | sed 's/WARN:.*//g'`  # Get the tables and views without any potential the "WARN" logs.
   for i in ${entities_on_ocean[@]}; do # Use un-quoted values, as the elemetns are single-words.
@@ -130,9 +124,11 @@ function copydb() {
       all_create_view_statements+=("$create_view_statement")
     else
       echo -e "\n'${i}' is a table, so we will check for its parquet files and create the table on Impala cluster.\n"
+      ((num_tables++))
       CURRENT_PRQ_FILE=`hdfs dfs -conf ${IMPALA_CONFIG_FILE} -ls -C "${IMPALA_HDFS_DB_BASE_PATH}/${db}.db/${i}/" | grep -v 'Found' | grep -v '_impala_insert_staging' |  head -1`
       if [ -z "$CURRENT_PRQ_FILE" ]; then # If there is not parquet-file inside.
           echo -e "\nERROR: THE TABLE \"${i}\" HAD NO FILES TO GET THE SCHEMA FROM! IT'S EMPTY!\n\n"
+          exit 4 # Comment out when testing a DB which has such a table, just for performing this exact test-check.
       else
         impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "create table ${db}.${i} like parquet '${CURRENT_PRQ_FILE}' stored as parquet;" |& tee error.log
         log_errors=`cat error.log | grep -E "WARN|ERROR|FAILED"`
@@ -143,74 +139,73 @@ function copydb() {
     fi
   done
 
-  echo -e "\nAll tables have been created, going to create the views..\n"
+  previous_num_of_views_to_retry=${#all_create_view_statements[@]}
+  if [[ $num_tables -gt 0 ]]; then
+    echo -e "\nAll ${num_tables} tables have been created, for db '${db}', going to create the ${previous_num_of_views_to_retry} views..\n"
+  else
+    echo -e "\nDB '${db}' does not have any tables, moving on to create the ${previous_num_of_views_to_retry} views..\n"
+  fi
 
-  # Time to loop through the views and create them.
-  # At this point all table-schemas should have been created.
-
-  previous_num_of_views_to_retry=${#all_create_view_statements}
   if [[ $previous_num_of_views_to_retry -gt 0 ]]; then
-    echo -e "\nAll_create_view_statements:\n\n${all_create_view_statements[@]}\n"  # DEBUG
+    echo -e "\nAll_create_view_statements (${previous_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"  # DEBUG
-    # Make Impala aware of the new tables, so it knows them when creating the views.
-    sleep 1
-    impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-    sleep 1
   else
     echo -e "\nDB '${db}' does not contain any views.\n"
   fi
 
   level_counter=0
-  while [[ ${#all_create_view_statements[@]} -gt 0 ]]; do
+  while [[ $previous_num_of_views_to_retry -gt 0 ]]; do
     ((level_counter++))
     # The only accepted reason for a view to not be created, is if it depends on another view, which has not been created yet.
     # In this case, we should retry creating this particular view again.
-    should_retry_create_view_statements=()
+    new_num_of_views_to_retry=0
 
     for create_view_statement in "${all_create_view_statements[@]}"; do # Here we use double quotes, as the elements are phrases, instead of single-words.
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "${create_view_statement}" |& tee error.log # impala-shell prints all logs in stderr, so wee need to capture them and put them in a file, in order to perform "grep" on them later
       specific_errors=`cat error.log | grep -E "FAILED: ParseException line 1:13 missing TABLE at 'view'|ERROR: AnalysisException: Could not resolve table reference:"`
       if [ -n "$specific_errors" ]; then
         echo -e "\nspecific_errors: ${specific_errors}\n"
-        echo -e "\nView '$(cat error.log | grep "CREATE VIEW " | sed 's/CREATE VIEW //g' | sed 's/ as select .*//g')' failed to be created, possibly because it depends on another view.\n"
+        echo -e "\nView '$(cat error.log | grep -Eo "Query: CREATE VIEW ([^\s]+)" | sed 's/Query: CREATE VIEW //g')' failed to be created, possibly because it depends on another view.\n"
-        should_retry_create_view_statements+=("$create_view_statement")
+        ((new_num_of_views_to_retry++)) # Increment it here, instead of acquiring the array's size in the end, as that doesn't work for some reason.
       else
+          all_create_view_statements=("${all_create_view_statements[@]/$create_view_statement}")  # Remove the current successful statement from the list.
           sleep 1 # Wait a bit for Impala to register that the view was created, before possibly referencing it by another view.
       fi
     done
 
-    new_num_of_views_to_retry=${#should_retry_create_view_statements}
+    all_create_view_statements=("$(echo "${all_create_view_statements[@]}" | grep -v '^[\s]*$')")  # Re-index the array, filtering-out any empty elements.
+    # Although the above command reduces the "active" elements to just the few to-be-retried, it does not manage to make the array return the its true size through the "${#all_create_view_statements[@]}" statement. So we use counters.
+
     if [[ $new_num_of_views_to_retry -eq $previous_num_of_views_to_retry ]]; then
       echo -e "\n\nERROR: THE NUMBER OF VIEWS TO RETRY HAS NOT BEEN REDUCED! THE SCRIPT IS LIKELY GOING TO AN INFINITE-LOOP! EXITING..\n\n"
-      return 3
+      exit 5
     elif [[ $new_num_of_views_to_retry -gt 0 ]]; then
-      echo -e "\nTo be retried \"create_view_statements\":\n\n${should_retry_create_view_statements[@]}\n"
+      echo -e "\nTo be retried \"create_view_statements\" (${new_num_of_views_to_retry}):\n\n${all_create_view_statements[@]}\n"
-      previous_num_of_views_to_retry=$new_num_of_views_to_retry
     else
       echo -e "\nFinished creating views, for db: '${db}', in level-${level_counter}.\n"
     fi
-    all_create_view_statements=("${should_retry_create_view_statement[@]}") # This is needed in any case to either move forward with the rest of the views or stop at 0 remaining views.
+    previous_num_of_views_to_retry=$new_num_of_views_to_retry
   done
 
-  sleep 1
-  impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA"
-  sleep 1
-
   echo -e "\nComputing stats for tables..\n"
   entities_on_impala=`impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} --delimited -q "show tables in ${db}"`
   for i in ${entities_on_impala[@]}; do # Use un-quoted values, as the elemetns are single-words.
     # Taking the create table statement from the Ocean cluster, just to check if its a view, as the output is easier than using impala-shell from Impala cluster.
     create_view_statement=`hive -e "show create table ${db}.${i};" | grep "CREATE VIEW"`  # This grep works here, as we do not want to match multiple-lines.
     if [ -z "$create_view_statement" ]; then  # If it's a table, then go load the data to it.
+      # Invalidate metadata of this DB's tables, in order for Impala to be aware of all parquet files put inside the tables' directories, previously, by "hadoop distcp".
+      impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "INVALIDATE METADATA ${db}.${i}"
+      sleep 1
       impala-shell --user ${HADOOP_USER_NAME} -i ${IMPALA_HOSTNAME} -q "compute stats ${db}.${i}";
     fi
   done
 
+  # Check if the entities in both clusters are the same, down to the exact names, not just the counts. (they are sorted in the same way both in hive and impala)
   if [ "${entities_on_impala[@]}" == "${entities_on_ocean[@]}" ]; then
     echo -e "\nAll entities have been copied to Impala cluster.\n"
   else
     echo -e "\n\nERROR: 1 OR MORE ENTITIES OF DB '${db}' FAILED TO BE COPIED TO IMPALA CLUSTER!\n\n"
     rm -f error.log
-    return 4
+    exit 6
   fi
 
   rm -f error.log

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql

@@ -1,3 +1,4 @@
+set mapred.job.queue.name=analytics;
 ------------------------------------------------------
 ------------------------------------------------------
 -- Additional relations

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql

@@ -1,3 +1,5 @@
+set mapred.job.queue.name=analytics;
+
 ------------------------------------------------------
 ------------------------------------------------------
 -- Additional relations

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql

@@ -1,3 +1,5 @@
+set mapred.job.queue.name=analytics;
+
 -------------------------------------------
 --- Extra tables, mostly used by indicators
 

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql

@@ -249,7 +249,7 @@ create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet a
             left semi join dd on dd.id=pd.datasource
             union all
             select ra.id, 1 as is_gold
-            from ${stats_db_name}.result_accessroute ra on ra.id = pd.id where ra.accessroute = 'gold') tmp on tmp.id=pd.id; /*EOS*/
+            from ${stats_db_name}.result_accessroute ra where ra.accessroute = 'gold') tmp on tmp.id=pd.id; /*EOS*/
 
 drop table if exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc purge; /*EOS*/
 create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as parquet as
@@ -294,7 +294,7 @@ left outer join (
     join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=p.id
     left outer join ${stats_db_name}.result_accessroute ra on ra.id=p.id
     where indi_gold.is_gold=0 and
-          ((d.type like '%Journal%' and ri.accessright not in ('Closed Access', 'Restricted', 'Not Available') and ri.license is not null) or ra.accessroute='hybrid')) tmp on pd.i=tmp.id; /*EOS*/
+          ((d.type like '%Journal%' and ri.accessright not in ('Closed Access', 'Restricted', 'Not Available') and ri.license is not null) or ra.accessroute='hybrid')) tmp on p.id=tmp.id; /*EOS*/
 
 drop table if exists ${stats_db_name}.indi_org_fairness purge; /*EOS*/
 create table if not exists ${stats_db_name}.indi_org_fairness stored as parquet as
@@ -380,7 +380,7 @@ CREATE TEMPORARY VIEW allresults as
 
 drop table if exists ${stats_db_name}.indi_org_fairness_pub purge; /*EOS*/
 
-create table if not exists ${stats_db_name}.indi_org_fairness_pub as
+create table if not exists ${stats_db_name}.indi_org_fairness_pub stored as parquet as
 select ar.organization, rf.no_result_fair/ar.no_allresults org_fairness
 from allresults ar join result_fair rf
 on rf.organization=ar.organization; /*EOS*/
@@ -639,7 +639,7 @@ from ${stats_db_name}.publication p
 
 drop table if exists ${stats_db_name}.indi_result_with_pid purge; /*EOS*/
 
-create table if not exists ${stats_db_name}.indi_result_with_pid as
+create table if not exists ${stats_db_name}.indi_result_with_pid stored as parquet as
 select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
 from ${stats_db_name}.result p
          left outer join (
@@ -653,7 +653,7 @@ group by rf.id; /*EOS*/
 
 drop table if exists ${stats_db_name}.indi_pub_interdisciplinarity purge; /*EOS*/
 
-create table if not exists ${stats_db_name}.indi_pub_interdisciplinarity as
+create table if not exists ${stats_db_name}.indi_pub_interdisciplinarity stored as parquet as
 select distinct p.id as id, coalesce(is_interdisciplinary, 0)
 as is_interdisciplinary
 from pub_fos_totals p
@@ -1006,14 +1006,14 @@ left outer join (
 drop table if exists ${stats_db_name}.result_country purge; /*EOS*/
 
 create table ${stats_db_name}.result_country stored as parquet as
-select distinct *
+select distinct id, country
 from (
     select ro.id, o.country
     from ${stats_db_name}.result_organization ro
     left outer join ${stats_db_name}.organization o on o.id=ro.organization
     union all
     select rp.id, f.country
-    from ${stats_db_name}.result_projects
+    from ${stats_db_name}.result_projects rp
     left outer join ${stats_db_name}.project p on p.id=rp.project
     left outer join ${stats_db_name}.funder f on f.name=p.funder
      ) rc

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql

@@ -1,3 +1,5 @@
+set mapred.job.queue.name=analytics;
+
 ----------------------------------------------------
 -- Shortcuts for various definitions in stats db ---
 ----------------------------------------------------

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql

@@ -1,3 +1,5 @@
+set mapred.job.queue.name=analytics;
+
 -- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
 -- peer reviewed)
 drop table if exists ${stats_db_name}.result_tmp;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql

@@ -1,3 +1,5 @@
+set mapred.job.queue.name=analytics;
+
 --------------------------------------------------------------
 --------------------------------------------------------------
 -- Publication table/view and Publication related tables/views

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -368,6 +368,7 @@
                 ${sparkClusterOpts}
                 ${sparkResourceOpts}
                 ${sparkApplicationOpts}
+		--queue analytics
             </spark-opts>
             <arg>--hiveMetastoreUris</arg><arg>${hive_metastore_uris}</arg>
             <arg>--sql</arg><arg>eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql</arg>

dhp-workflows/dhp-usage-raw-data-update/src/main/resources/eu/dnetlib/dhp/oa/graph/usagerawdata/oozie_app/workflow.xml

@@ -30,6 +30,10 @@
                 <name>oozie.launcher.mapred.job.queue.name</name>
                 <value>${oozieLauncherQueueName}</value>
             </property>
+            <property>
+                <name>mapred.child.java.opts</name>
+                <value>-Xmx16g</value>
+            </property>
         </configuration>
     </global>