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fixed paths in wf to match the req of the pathname

This commit is contained in:
Miriam Baglioni 2023-10-02 14:10:57 +02:00
parent 9898470b0e
commit d7fccdc64b
1 changed files with 4 additions and 4 deletions
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8
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/opencitations/oozie_app/workflow.xml
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@ -46,7 +46,7 @@
</configuration> </configuration>
<exec>download.sh</exec> <exec>download.sh</exec>
<argument>${filelist}</argument> <argument>${filelist}</argument>
<argument>${workingPath}/Original</argument> <argument>${workingPath}/${prefix}/Original</argument>
<env-var>HADOOP_USER_NAME=${wf:user()}</env-var> <env-var>HADOOP_USER_NAME=${wf:user()}</env-var>
<file>download.sh</file> <file>download.sh</file>
<capture-output/> <capture-output/>
@ -59,7 +59,7 @@
<main-class>eu.dnetlib.dhp.actionmanager.opencitations.GetOpenCitationsRefs</main-class> <main-class>eu.dnetlib.dhp.actionmanager.opencitations.GetOpenCitationsRefs</main-class>
<arg>--hdfsNameNode</arg><arg>${nameNode}</arg> <arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
<arg>--inputFile</arg><arg>${inputFile}</arg> <arg>--inputFile</arg><arg>${inputFile}</arg>
<arg>--workingPath</arg><arg>${workingPath}</arg> <arg>--workingPath</arg><arg>${workingPath}/${prefix}</arg>
<arg>--prefix</arg><arg>${prefix}</arg> <arg>--prefix</arg><arg>${prefix}</arg>
</java> </java>
<ok to="read"/> <ok to="read"/>
@ -83,8 +83,8 @@
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir} --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
</spark-opts> </spark-opts>
<arg>--workingPath</arg><arg>${workingPath}/${prefix}</arg> <arg>--workingPath</arg><arg>${workingPath}/${prefix}/${prefix}</arg>
<arg>--outputPath</arg><arg>${workingPath}/${prefix}_JSON/</arg> <arg>--outputPath</arg><arg>${workingPath}/${prefix}/${prefix}_JSON/</arg>
<arg>--delimiter</arg><arg>${delimiter}</arg> <arg>--delimiter</arg><arg>${delimiter}</arg>
<arg>--inputFile</arg><arg>${inputFileCoci}</arg> <arg>--inputFile</arg><arg>${inputFileCoci}</arg>
<arg>--format</arg><arg>${prefix}</arg> <arg>--format</arg><arg>${prefix}</arg>