From d70793847d4170b5cebc08dd5cde4c4f737cef59 Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Tue, 26 Mar 2024 12:17:52 +0100 Subject: [PATCH] resolving conflicts on step16-createIndicatorsTables.sql --- .../scripts/step16-createIndicatorsTables.sql | 648 +++++++----------- 1 file changed, 243 insertions(+), 405 deletions(-) diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql index f13b2500c..70cde6481 100755 --- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql +++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql @@ -1,390 +1,255 @@ -- Sprint 1 ---- drop table if exists ${stats_db_name}.indi_pub_green_oa purge; /*EOS*/ - ---create table if not exists ${stats_db_name}.indi_pub_green_oa stored as parquet as ---select distinct p.id, coalesce(green_oa, 0) as green_oa ---from ${stats_db_name}.publication p --- left outer join ( --- select p.id, 1 as green_oa --- from ${stats_db_name}.publication p --- join ${stats_db_name}.result_instance ri on ri.id = p.id --- join ${stats_db_name}.datasource on datasource.id = ri.hostedby --- where datasource.type like '%Repository%' --- and (ri.accessright = 'Open Access' --- or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp --- on p.id= tmp.id; create table if not exists ${stats_db_name}.indi_pub_green_oa stored as parquet as select distinct p.id, coalesce(green_oa, 0) as green_oa from ${stats_db_name}.publication p - left outer join ( +left outer join ( select p.id, 1 as green_oa from ${stats_db_name}.publication p - join ${stats_db_name}.result_instance ri on ri.id = p.id - join ${stats_db_name}.datasource on datasource.id = ri.hostedby - where datasource.type like '%Repository%' - and (ri.accessright = 'Open Access' - or ri.accessright = 'Embargo' or ri.accessright = 'Open Source') and datasource.name!='Other') tmp - on p.id= tmp.id; /*EOS*/ + join ${stats_db_name}.result_instance ri on ri.id = p.id + join ${stats_db_name}.datasource on datasource.id = ri.hostedby + where datasource.type like '%Repository%' and (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source') and datasource.name!='Other') tmp on p.id= tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_grey_lit purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_grey_lit stored as parquet as select distinct p.id, coalesce(grey_lit, 0) as grey_lit from ${stats_db_name}.publication p - left outer join ( +left outer join ( select p.id, 1 as grey_lit from ${stats_db_name}.publication p - join ${stats_db_name}.result_classifications rt on rt.id = p.id - where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and - not exists (select 1 from ${stats_db_name}.result_classifications rc where type ='Other literature type' - and rc.id=p.id)) tmp on p.id=tmp.id; /*EOS*/ + join ${stats_db_name}.result_classifications rt on rt.id = p.id + where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') + and not exists (select 1 from ${stats_db_name}.result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_doi_from_crossref purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_doi_from_crossref stored as parquet as select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref from ${stats_db_name}.publication p - left outer join - (select ri.id, 1 as doi_from_crossref from ${stats_db_name}.result_instance ri - join ${stats_db_name}.datasource d on d.id = ri.collectedfrom - where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp - on tmp.id=p.id; /*EOS*/ +left outer join ( + select ri.id, 1 as doi_from_crossref from ${stats_db_name}.result_instance ri + join ${stats_db_name}.datasource d on d.id = ri.collectedfrom + where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp on tmp.id=p.id; /*EOS*/ -- Sprint 2 ---- drop table if exists ${stats_db_name}.indi_result_has_cc_licence purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_has_cc_licence stored as parquet as select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license from ${stats_db_name}.result r -left outer join (select r.id, license.type as lic from ${stats_db_name}.result r - join ${stats_db_name}.result_licenses as license on license.id = r.id - where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp - on r.id= tmp.id; /*EOS*/ +left outer join ( + select r.id, license.type as lic from ${stats_db_name}.result r + join ${stats_db_name}.result_licenses as license on license.id = r.id + where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc %') tmp on r.id= tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_has_cc_licence_url purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_has_cc_licence_url stored as parquet as select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url from ${stats_db_name}.result r - left outer join (select r.id, lower(parse_url(license.type, "HOST")) as lic_host - from ${stats_db_name}.result r - join ${stats_db_name}.result_licenses as license on license.id = r.id - WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp - on r.id= tmp.id; /*EOS*/ +left outer join ( + select r.id, lower(parse_url(license.type, "HOST")) as lic_host + from ${stats_db_name}.result r + join ${stats_db_name}.result_licenses as license on license.id = r.id + WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp on r.id= tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_has_abstract purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_has_abstract stored as parquet as select distinct publication.id, cast(coalesce(abstract, true) as int) has_abstract from ${stats_db_name}.publication; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_with_orcid purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_with_orcid stored as parquet as select distinct r.id, coalesce(has_orcid, 0) as has_orcid from ${stats_db_name}.result r - left outer join (select id, 1 as has_orcid from ${stats_db_name}.result_orcid) tmp - on r.id= tmp.id; /*EOS*/ +left outer join ( + select id, 1 as has_orcid from ${stats_db_name}.result_orcid) tmp on r.id= tmp.id; /*EOS*/ + ---- Sprint 3 ---- - drop table if exists ${stats_db_name}.indi_funded_result_with_fundref purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_funded_result_with_fundref stored as parquet as select distinct r.result as id, coalesce(fundref, 0) as fundref from ${stats_db_name}.project_results r - left outer join (select distinct result, 1 as fundref from ${stats_db_name}.project_results - where provenance='Harvested') tmp - on r.result= tmp.result; /*EOS*/ - --- create table indi_result_org_collab stored as parquet as --- select o1.organization org1, o2.organization org2, count(distinct o1.id) as collaborations --- from result_organization as o1 --- join result_organization as o2 on o1.id=o2.id and o1.organization!=o2.organization --- group by o1.organization, o2.organization; --- --- compute stats indi_result_org_collab; --- -create TEMPORARY VIEW tmp AS SELECT ro.organization organization, ro.id, o.name from ${stats_db_name}.result_organization ro -join ${stats_db_name}.organization o on o.id=ro.organization where o.name is not null; /*EOS*/ +left outer join ( + select distinct result, 1 as fundref from ${stats_db_name}.project_results where provenance='Harvested') tmp on r.result= tmp.result; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_org_collab purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_org_collab stored as parquet as -select o1.organization org1, o1.name org1name1, o2.organization org2, o2.name org2name2, count(o1.id) as collaborations -from tmp as o1 -join tmp as o2 where o1.id=o2.id and o1.organization!=o2.organization and o1.name!=o2.name -group by o1.organization, o2.organization, o1.name, o2.name; /*EOS*/ - -DROP VIEW if exists tmp; /*EOS*/ - -create TEMPORARY VIEW tmp AS -select distinct ro.organization organization, ro.id, o.name, o.country from ${stats_db_name}.result_organization ro -join ${stats_db_name}.organization o on o.id=ro.organization where country <> 'UNKNOWN' and o.name is not null; /*EOS*/ + WITH tmp AS ( + SELECT ro.organization organization, ro.id, o.name + from ${stats_db_name}.result_organization ro + join ${stats_db_name}.organization o on o.id=ro.organization where o.name is not null) + select o1.organization org1, o1.name org1name1, o2.organization org2, o2.name org2name2, count(o1.id) as collaborations + from tmp as o1 + join tmp as o2 where o1.id=o2.id and o1.organization!=o2.organization and o1.name!=o2.name + group by o1.organization, o2.organization, o1.name, o2.name; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_org_country_collab purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_org_country_collab stored as parquet as -select o1.organization org1,o1.name org1name1, o2.country country2, count(o1.id) as collaborations -from tmp as o1 join tmp as o2 on o1.id=o2.id -where o1.id=o2.id and o1.country!=o2.country -group by o1.organization, o1.id, o1.name, o2.country; /*EOS*/ - -drop table if exists tmp purge; /*EOS*/ - -create TEMPORARY VIEW tmp AS -select o.id organization, o.name, ro.project as project from ${stats_db_name}.organization o - join ${stats_db_name}.organization_projects ro on o.id=ro.id where o.name is not null; /*EOS*/ + WITH tmp AS ( + select distinct ro.organization organization, ro.id, o.name, o.country + from ${stats_db_name}.result_organization ro + join ${stats_db_name}.organization o on o.id=ro.organization + where country <> 'UNKNOWN' and o.name is not null) + select o1.organization org1,o1.name org1name1, o2.country country2, count(o1.id) as collaborations + from tmp as o1 join tmp as o2 on o1.id=o2.id + where o1.id=o2.id and o1.country!=o2.country + group by o1.organization, o1.id, o1.name, o2.country; /*EOS*/ drop table if exists ${stats_db_name}.indi_project_collab_org purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_project_collab_org stored as parquet as -select o1.organization org1,o1.name orgname1, o2.organization org2, o2.name orgname2, count(distinct o1.project) as collaborations -from tmp as o1 - join tmp as o2 on o1.project=o2.project -where o1.organization<>o2.organization and o1.name<>o2.name -group by o1.name,o2.name, o1.organization, o2.organization; /*EOS*/ - -DROP VIEW if exists tmp; /*EOS*/ - -create TEMPORARY VIEW tmp AS -select o.id organization, o.name, o.country , ro.project as project from ${stats_db_name}.organization o - join ${stats_db_name}.organization_projects ro on o.id=ro.id - and o.country <> 'UNKNOWN' and o.name is not null; /*EOS*/ + WITH tmp AS ( + select o.id organization, o.name, ro.project as project + from ${stats_db_name}.organization o + join ${stats_db_name}.organization_projects ro on o.id=ro.id where o.name is not null) + select o1.organization org1,o1.name orgname1, o2.organization org2, o2.name orgname2, count(distinct o1.project) as collaborations + from tmp as o1 + join tmp as o2 on o1.project=o2.project + where o1.organization<>o2.organization and o1.name<>o2.name + group by o1.name,o2.name, o1.organization, o2.organization; /*EOS*/ drop table if exists ${stats_db_name}.indi_project_collab_org_country purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_project_collab_org_country stored as parquet as -select o1.organization org1,o1.name org1name, o2.country country2, count(distinct o1.project) as collaborations -from tmp as o1 - join tmp as o2 on o1.project=o2.project -where o1.organization<>o2.organization and o1.country<>o2.country -group by o1.organization, o2.country, o1.name; /*EOS*/ - -DROP VIEW if exists tmp; /*EOS*/ + WITH tmp AS ( + select o.id organization, o.name, o.country , ro.project as project + from ${stats_db_name}.organization o + join ${stats_db_name}.organization_projects ro on o.id=ro.id and o.country <> 'UNKNOWN' and o.name is not null) + select o1.organization org1,o1.name org1name, o2.country country2, count(distinct o1.project) as collaborations + from tmp as o1 + join tmp as o2 on o1.project=o2.project + where o1.organization<>o2.organization and o1.country<>o2.country + group by o1.organization, o2.country, o1.name; /*EOS*/ drop table if exists ${stats_db_name}.indi_funder_country_collab purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_funder_country_collab stored as parquet as with tmp as (select funder, project, country from ${stats_db_name}.organization_projects op join ${stats_db_name}.organization o on o.id=op.id join ${stats_db_name}.project p on p.id=op.project where country <> 'UNKNOWN') -select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations -from tmp as f1 - join tmp as f2 on f1.project=f2.project -where f1.country<>f2.country -group by f1.funder, f2.country, f1.country; /*EOS*/ - -create TEMPORARY VIEW tmp AS -select distinct country, ro.id as result from ${stats_db_name}.organization o - join ${stats_db_name}.result_organization ro on o.id=ro.organization - where country <> 'UNKNOWN' and o.name is not null; /*EOS*/ + select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations + from tmp as f1 + join tmp as f2 on f1.project=f2.project + where f1.country<>f2.country + group by f1.funder, f2.country, f1.country; /*EOS*/ drop table if exists ${stats_db_name}.indi_result_country_collab purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_country_collab stored as parquet as -select o1.country country1, o2.country country2, count(o1.result) as collaborations -from tmp as o1 - join tmp as o2 on o1.result=o2.result -where o1.country<>o2.country -group by o1.country, o2.country; /*EOS*/ + WITH tmp AS ( + select distinct country, ro.id as result from ${stats_db_name}.organization o + join ${stats_db_name}.result_organization ro on o.id=ro.organization + where country <> 'UNKNOWN' and o.name is not null) + select o1.country country1, o2.country country2, count(o1.result) as collaborations + from tmp as o1 + join tmp as o2 on o1.result=o2.result + where o1.country<>o2.country + group by o1.country, o2.country; /*EOS*/ -DROP VIEW if exists tmp; /*EOS*/ ---- Sprint 4 ---- drop table if exists ${stats_db_name}.indi_pub_diamond purge; /*EOS*/ - ---create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as ---select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal ---from ${stats_db_name}.publication_datasources pd --- left outer join ( --- select pd.id, 1 as in_diamond_journal from ${stats_db_name}.publication_datasources pd --- join ${stats_db_name}.datasource d on d.id=pd.datasource --- join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) --- and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp --- on pd.id=tmp.id; - create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as -select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal -from ${stats_db_name}.publication_datasources pd -left outer join (select pd.id, 1 as in_diamond_journal from ${stats_db_name}.publication_datasources pd -join ${stats_db_name}.datasource d on d.id=pd.datasource -join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) -and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp -on pd.id=tmp.id; /*EOS*/ + select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal + from ${stats_db_name}.publication_datasources pd + left outer join ( + select pd.id, 1 as in_diamond_journal + from ${stats_db_name}.publication_datasources pd + join ${stats_db_name}.datasource d on d.id=pd.datasource + join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) + and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp on pd.id=tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_in_transformative purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as parquet as -select distinct pd.id, coalesce(is_transformative, 0) as is_transformative -from ${stats_db_name}.publication pd - left outer join ( - select pd.id, 1 as is_transformative from ${stats_db_name}.publication_datasources pd - join ${stats_db_name}.datasource d on d.id=pd.datasource - join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) - and ps.is_transformative_journal=true) tmp - on pd.id=tmp.id; /*EOS*/ + select distinct pd.id, coalesce(is_transformative, 0) as is_transformative + from ${stats_db_name}.publication pd + left outer join ( + select pd.id, 1 as is_transformative + from ${stats_db_name}.publication_datasources pd + join ${stats_db_name}.datasource d on d.id=pd.datasource + join STATS_EXT.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) + and ps.is_transformative_journal=true) tmp on pd.id=tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_closed_other_open purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as parquet as -select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from ${stats_db_name}.result_instance ri - left outer join - (select ri.id, 1 as pub_closed_other_open from ${stats_db_name}.result_instance ri - join ${stats_db_name}.publication p on p.id=ri.id - join ${stats_db_name}.datasource d on ri.hostedby=d.id - where d.type like '%Journal%' and ri.accessright='Closed Access' and - (p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp - on tmp.id=ri.id; /*EOS*/ + select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open + from ${stats_db_name}.result_instance ri + left outer join ( + select ri.id, 1 as pub_closed_other_open + from ${stats_db_name}.result_instance ri + join ${stats_db_name}.publication p on p.id=ri.id + join ${stats_db_name}.datasource d on ri.hostedby=d.id + where d.type like '%Journal%' and ri.accessright='Closed Access' and + (p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp on tmp.id=ri.id; /*EOS*/ + ---- Sprint 5 ---- drop table if exists ${stats_db_name}.indi_result_no_of_copies purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_result_no_of_copies stored as parquet as -select id, count(id) as number_of_copies from ${stats_db_name}.result_instance group by id; /*EOS*/ + select id, count(id) as number_of_copies + from ${stats_db_name}.result_instance + group by id; /*EOS*/ ---- Sprint 6 ---- drop table if exists ${stats_db_name}.indi_pub_downloads purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_downloads stored as parquet as -SELECT result_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats - join ${stats_db_name}.publication on result_id=id -where downloads>0 -GROUP BY result_id -order by no_downloads desc; /*EOS*/ - ---ANALYZE TABLE ${stats_db_name}.indi_pub_downloads COMPUTE STATISTICS; + SELECT result_id, sum(downloads) no_downloads + from openaire_prod_usage_stats.usage_stats + join ${stats_db_name}.publication on result_id=id + where downloads>0 + GROUP BY result_id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_downloads_datasource purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_downloads_datasource stored as parquet as -SELECT result_id, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats - join ${stats_db_name}.publication on result_id=id -where downloads>0 -GROUP BY result_id, repository_id -order by result_id; /*EOS*/ + SELECT result_id, repository_id, sum(downloads) no_downloads + from openaire_prod_usage_stats.usage_stats + join ${stats_db_name}.publication on result_id=id + where downloads>0 + GROUP BY result_id, repository_id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_downloads_year purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_downloads_year stored as parquet as -SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, sum(downloads) no_downloads -from openaire_prod_usage_stats.usage_stats us -join ${stats_db_name}.publication on result_id=id where downloads>0 -GROUP BY result_id, substring(us.`date`, 1,4); /*EOS*/ + SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, sum(downloads) no_downloads + from openaire_prod_usage_stats.usage_stats us + join ${stats_db_name}.publication on result_id=id where downloads>0 + GROUP BY result_id, substring(us.`date`, 1,4); /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_downloads_datasource_year purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_downloads_datasource_year stored as parquet as -SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats us -join ${stats_db_name}.publication on result_id=id -where downloads>0 -GROUP BY result_id, repository_id, substring(us.`date`, 1,4); /*EOS*/ + SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, repository_id, sum(downloads) no_downloads + from openaire_prod_usage_stats.usage_stats us + join ${stats_db_name}.publication on result_id=id + where downloads>0 + GROUP BY result_id, repository_id, substring(us.`date`, 1,4); /*EOS*/ + ---- Sprint 7 ---- drop table if exists ${stats_db_name}.indi_pub_gold_oa purge; /*EOS*/ - ---create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as --- WITH gold_oa AS ( SELECT --- issn_l, --- journal_is_in_doaj, --- journal_is_oa, --- issn_1 as issn --- FROM --- STATS_EXT.oa_journals --- WHERE --- issn_1 != "" --- UNION --- ALL SELECT --- issn_l, --- journal_is_in_doaj, --- journal_is_oa, --- issn_2 as issn --- FROM --- STATS_EXT.oa_journals --- WHERE --- issn_2 != "" ), issn AS ( SELECT --- * --- FROM ---( SELECT --- id, --- issn_printed as issn --- FROM --- ${stats_db_name}.datasource --- WHERE --- issn_printed IS NOT NULL --- UNION ALL --- SELECT --- id, --- issn_online as issn --- FROM --- ${stats_db_name}.datasource --- WHERE --- issn_online IS NOT NULL or id like '%doajarticles%') as issn --- WHERE --- LENGTH(issn) > 7) ---SELECT --- DISTINCT pd.id, coalesce(is_gold, 0) as is_gold ---FROM --- ${stats_db_name}.publication_datasources pd --- left outer join( --- select pd.id, 1 as is_gold FROM ${stats_db_name}.publication_datasources pd --- JOIN issn on issn.id=pd.datasource --- JOIN gold_oa on issn.issn = gold_oa.issn) tmp --- on pd.id=tmp.id; - ---create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as ---with gold_oa as ( ---SELECT issn,issn_l from stats_ext.issn_gold_oa_dataset_v5), ---issn AS (SELECT * FROM ---(SELECT id,issn_printed as issn FROM ${stats_db_name}.datasource ---WHERE issn_printed IS NOT NULL ---UNION ALL ---SELECT id, issn_online as issn FROM ${stats_db_name}.datasource ---WHERE issn_online IS NOT NULL or id like '%doajarticles%') as issn ---WHERE LENGTH(issn) > 7), ---alljournals AS(select issn, issn_l from stats_ext.alljournals ---where journal_is_in_doaj=true or journal_is_oa=true) ---SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold ---FROM ${stats_db_name}.publication_datasources pd ---left outer join ( ---select pd.id, 1 as is_gold FROM ${stats_db_name}.publication_datasources pd ---JOIN issn on issn.id=pd.datasource ---JOIN gold_oa on issn.issn = gold_oa.issn ---join alljournals on issn.issn=alljournals.issn ---left outer join ${stats_db_name}.result_instance ri on ri.id=pd.id ---and ri.accessright!='Closed Access' and ri.accessright_uw='gold') tmp ---on pd.id=tmp.id; create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as -with gold_oa as ( -select distinct issn from ( - SELECT issn_l as issn from stats_ext.issn_gold_oa_dataset_v5 - UNION ALL - SELECT issn as issn from stats_ext.issn_gold_oa_dataset_v5 - UNION ALL - select issn from stats_ext.alljournals where journal_is_in_doaj=true or journal_is_oa=true - UNION ALL - select issn_l as issn from stats_ext.alljournals where journal_is_in_doaj=true or journal_is_oa=true) foo), -dd as ( -select distinct * from ( - select id, issn_printed as issn from ${stats_db_name}.datasource d where d.id like '%doajarticles%' - UNION ALL - select id, issn_online as issn from ${stats_db_name}.datasource d where d.id like '%doajarticles%' - UNION ALL - select id, issn_printed as issn from ${stats_db_name}.datasource d join gold_oa on gold_oa.issn=d.issn_printed - UNION ALL - select id, issn_online as issn from ${stats_db_name}.datasource d join gold_oa on gold_oa.issn=d.issn_online) foo -) -SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold -FROM ${stats_db_name}.publication_datasources pd -left outer join ( - select pd.id, 1 as is_gold - FROM ${stats_db_name}.publication_datasources pd - join dd on dd.id=pd.datasource - left outer join ${stats_db_name}.result_accessroute ra on ra.id = pd.id where ra.accessroute = 'gold') tmp on tmp.id=pd.id; /*EOS*/ + with gold_oa as ( + select distinct issn from ( + SELECT issn_l as issn from stats_ext.issn_gold_oa_dataset_v5 + UNION ALL + SELECT issn as issn from stats_ext.issn_gold_oa_dataset_v5 + UNION ALL + select issn from stats_ext.alljournals where journal_is_in_doaj=true or journal_is_oa=true + UNION ALL + select issn_l as issn from stats_ext.alljournals where journal_is_in_doaj=true or journal_is_oa=true) foo), + dd as ( + select distinct * from ( + select id, issn_printed as issn from ${stats_db_name}.datasource d where d.id like '%doajarticles%' + UNION ALL + select id, issn_online as issn from ${stats_db_name}.datasource d where d.id like '%doajarticles%' + UNION ALL + select id, issn_printed as issn from ${stats_db_name}.datasource d join gold_oa on gold_oa.issn=d.issn_printed + UNION ALL + select id, issn_online as issn from ${stats_db_name}.datasource d join gold_oa on gold_oa.issn=d.issn_online) foo + ) + SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold + FROM ${stats_db_name}.publication_datasources pd + left outer join ( + select pd.id, 1 as is_gold + FROM ${stats_db_name}.publication_datasources pd + join dd on dd.id=pd.datasource + left outer join ${stats_db_name}.result_accessroute ra on ra.id = pd.id where ra.accessroute = 'gold') tmp on tmp.id=pd.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as parquet as WITH hybrid_oa AS ( SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn @@ -395,121 +260,57 @@ create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as FROM STATS_EXT.plan_s_jn WHERE issn_online != "" and (journal_is_in_doaj = FALSE OR journal_is_oa = FALSE)), issn AS ( - SELECT * - FROM ( - SELECT id, issn_printed as issn - FROM ${stats_db_name}.datasource - WHERE issn_printed IS NOT NULL - UNION ALL - SELECT id,issn_online as issn - FROM ${stats_db_name}.datasource - WHERE issn_online IS NOT NULL ) as issn - WHERE LENGTH(issn) > 7) -SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa -FROM ${stats_db_name}.publication_datasources pd - LEFT OUTER JOIN ( - SELECT pd.id, 1 as is_hybrid_oa from ${stats_db_name}.publication_datasources pd - JOIN ${stats_db_name}.datasource d on d.id=pd.datasource - JOIN issn on issn.id=pd.datasource - JOIN hybrid_oa ON issn.issn = hybrid_oa.issn - JOIN ${stats_db_name}.indi_result_has_cc_licence cc on pd.id=cc.id - JOIN ${stats_db_name}.indi_pub_gold_oa ga on pd.id=ga.id - where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id; /*EOS*/ + SELECT * + FROM ( + SELECT id, issn_printed as issn + FROM ${stats_db_name}.datasource + WHERE issn_printed IS NOT NULL + UNION ALL + SELECT id,issn_online as issn + FROM ${stats_db_name}.datasource + WHERE issn_online IS NOT NULL ) as issn + WHERE LENGTH(issn) > 7) + SELECT DISTINCT pd.id, coalesce(is_hybrid_oa, 0) as is_hybrid_oa + FROM ${stats_db_name}.publication_datasources pd + LEFT OUTER JOIN ( + SELECT pd.id, 1 as is_hybrid_oa from ${stats_db_name}.publication_datasources pd + JOIN ${stats_db_name}.datasource d on d.id=pd.datasource + JOIN issn on issn.id=pd.datasource + JOIN hybrid_oa ON issn.issn = hybrid_oa.issn + JOIN ${stats_db_name}.indi_result_has_cc_licence cc on pd.id=cc.id + JOIN ${stats_db_name}.indi_pub_gold_oa ga on pd.id=ga.id where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_hybrid purge; /*EOS*/ - ---create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as --- WITH gold_oa AS ( SELECT --- issn_l, --- journal_is_in_doaj, --- journal_is_oa, --- issn_1 as issn, --- has_apc --- FROM --- STATS_EXT.oa_journals --- WHERE --- issn_1 != "" --- UNION --- ALL SELECT --- issn_l, --- journal_is_in_doaj, --- journal_is_oa, --- issn_2 as issn, --- has_apc --- FROM --- STATS_EXT.oa_journals --- WHERE --- issn_2 != "" ), issn AS ( SELECT --- * --- FROM ---( SELECT --- id, --- issn_printed as issn --- FROM --- ${stats_db_name}.datasource --- WHERE --- issn_printed IS NOT NULL --- UNION ALL --- SELECT --- id, --- issn_online as issn --- FROM --- ${stats_db_name}.datasource --- WHERE --- issn_online IS NOT NULL or id like '%doajarticles%') as issn --- WHERE --- LENGTH(issn) > 7) ---select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid ---from ${stats_db_name}.publication_datasources pd --- left outer join ( --- select pd.id, 1 as is_hybrid from ${stats_db_name}.publication_datasources pd --- join ${stats_db_name}.datasource d on d.id=pd.datasource --- join issn on issn.id=pd.datasource --- join gold_oa on issn.issn=gold_oa.issn --- where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp --- on pd.id=tmp.id; - ---create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as ---select distinct pd.id,coalesce(is_hybrid,0) is_hybrid from ${stats_db_name}.publication_datasources pd ---left outer join (select pd.id, 1 as is_hybrid from ${stats_db_name}.publication_datasources pd ---join ${stats_db_name}.datasource d on pd.datasource=d.id ---join ${stats_db_name}.result_instance ri on ri.id=pd.id ---join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id ---join ${stats_db_name}.result_accessroute ra on ra.id=pd.id ---where d.type like '%Journal%' and ri.accessright!='Closed Access' and (ri.accessright_uw!='gold' ---or indi_gold.is_gold=0) and (ra.accessroute='hybrid' or ri.license is not null)) tmp ---on pd.id=tmp.id; - create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as select distinct pd.id,coalesce(is_hybrid,0) is_hybrid from ${stats_db_name}.publication pd -left outer join (select pd.id, 1 as is_hybrid from ${stats_db_name}.publication pd -join ${stats_db_name}.result_instance ri on ri.id=pd.id -join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id -join ${stats_db_name}.result_accessroute ra on ra.id=pd.id -join ${stats_db_name}.datasource d on d.id=ri.hostedby -where indi_gold.is_gold=0 and ((d.type like '%Journal%' and ri.accessright!='Closed Access' and ri.accessright!='Restricted' and ri.license is not null) or -ra.accessroute='hybrid'))tmp -on pd.id=tmp.id; /*EOS*/ +left outer join ( + select pd.id, 1 as is_hybrid from ${stats_db_name}.publication pd + join ${stats_db_name}.result_instance ri on ri.id=pd.id + join ${stats_db_name}.indi_pub_gold_oa indi_gold on indi_gold.id=pd.id + join ${stats_db_name}.result_accessroute ra on ra.id=pd.id + join ${stats_db_name}.datasource d on d.id=ri.hostedby + where indi_gold.is_gold=0 and ((d.type like '%Journal%' and ri.accessright!='Closed Access' and ri.accessright!='Restricted' and ri.license is not null) or ra.accessroute='hybrid')) tmp on pd.id=tmp.id; /*EOS*/ drop table if exists ${stats_db_name}.indi_org_fairness purge; /*EOS*/ - create table if not exists ${stats_db_name}.indi_org_fairness stored as parquet as --return results with PIDs, and rich metadata group by organization - with result_fair as - (select ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro - join ${stats_db_name}.result r on r.id=ro.id + with result_fair as ( + select ro.organization organization, count(distinct ro.id) no_result_fair + from ${stats_db_name}.result_organization ro + join ${stats_db_name}.result r on r.id=ro.id --join result_pids rp on r.id=rp.id - where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003 - group by ro.organization), + where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003 + group by ro.organization), --return all results group by organization - allresults as (select ro.organization, count(distinct ro.id) no_allresults from ${stats_db_name}.result_organization ro - join ${stats_db_name}.result r on r.id=ro.id - where cast(year as int)>2003 - group by ro.organization) + allresults as ( + select ro.organization, count(distinct ro.id) no_allresults from ${stats_db_name}.result_organization ro + join ${stats_db_name}.result r on r.id=ro.id + where cast(year as int)>2003 + group by ro.organization) --return results_fair/all_results -select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness -from allresults - join result_fair on result_fair.organization=allresults.organization; /*EOS*/ + select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness + from allresults + join result_fair on result_fair.organization=allresults.organization; /*EOS*/ CREATE TEMPORARY VIEW result_fair as select ro.organization organization, count(distinct ro.id) no_result_fair @@ -534,8 +335,8 @@ select ar.organization, rf.no_result_fair/ar.no_allresults org_fairness from allresults ar join result_fair rf on rf.organization=ar.organization; /*EOS*/ -DROP VIEW result_fair; /*EOS*/ -DROP VIEW allresults; /*EOS*/ +DROP VIEW result_fair; +DROP VIEW allresults; CREATE TEMPORARY VIEW result_fair as select year, ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro @@ -859,19 +660,6 @@ drop view pub_fos_totals; /*EOS*/ drop table if exists ${stats_db_name}.indi_pub_bronze_oa purge; /*EOS*/ ---create table if not exists ${stats_db_name}.indi_pub_bronze_oa stored as parquet as ---select distinct p.id, coalesce(is_bronze_oa,0) as is_bronze_oa ---from ${stats_db_name}.publication p ---left outer join ---(select p.id, 1 as is_bronze_oa from ${stats_db_name}.publication p ---join ${stats_db_name}.indi_result_has_cc_licence cc on cc.id=p.id ---join ${stats_db_name}.indi_pub_gold_oa ga on ga.id=p.id ---join ${stats_db_name}.result_instance ri on ri.id=p.id ---join ${stats_db_name}.datasource d on d.id=ri.hostedby ---where cc.has_cc_license=0 and ga.is_gold=0 ---and (d.type='Journal' or d.type='Journal Aggregator/Publisher') ---and ri.accessright='Open Access') tmp on tmp.id=p.id; - create table ${stats_db_name}.indi_pub_bronze_oa stored as parquet as select distinct pd.id,coalesce(is_bronze_oa,0) is_bronze_oa from ${stats_db_name}.publication pd left outer join (select pd.id, 1 as is_bronze_oa from ${stats_db_name}.publication pd @@ -1189,7 +977,7 @@ union all select pf.name from stats_ext.insitutions_for_publicly_funded pf join ${stats_db_name}.project p on p.funder=pf.name union all -select pf.name from stats_ext.insitutions_for_publicly_funded pf +select op.name from stats_ext.insitutions_for_publicly_funded pf join org_names_pids op on (op.name=pf.name or op.pid=pf.ror) and pf.publicly_funded='yes') foo) select distinct p.id, coalesce(publicly_funded, 0) as publicly_funded @@ -1199,3 +987,53 @@ select distinct ro.id, 1 as publicly_funded from ${stats_db_name}.result_organiz join ${stats_db_name}.organization o on o.id=ro.organization join publicly_funded_orgs pfo on o.name=pfo.name) tmp on p.id=tmp.id; /*EOS*/ +drop table if exists ${stats_db_name}.indi_pub_green_with_license purge; /*EOS*/ +create table ${stats_db_name}.indi_pub_green_with_license stored as parquet as +select distinct p.id, coalesce(green_with_license, 0) as green_with_license +from ${stats_db_name}.publication p +left outer join ( + select distinct p.id, 1 as green_with_license from ${stats_db_name}.publication p + join ${stats_db_name}.result_instance ri on ri.id = p.id + join ${stats_db_name}.datasource on datasource.id = ri.hostedby + where ri.license is not null and datasource.type like '%Repository%' and datasource.name!='Other') tmp on p.id= tmp.id; /*EOS*/ + +drop table if exists ${stats_db_name}.result_country purge; /*EOS*/ + +create table ${stats_db_name}.result_country stored as parquet as +select distinct ro.id, coalesce(o.country, f.country) +from ${stats_db_name}.result_organization ro +left outer join ${stats_db_name}.organization o on o.id=ro.organization +left outer join ${stats_db_name}.result_projects rp on rp.id=ro.id +left outer join ${stats_db_name}.project p on p.id=rp.project +left outer join ${stats_db_name}.funder f on f.name=p.funder +where coalesce(o.country, f.country) IS NOT NULL; + +drop table if exists ${stats_db_name}.indi_result_oa_with_license purge; /*EOS*/ +create table ${stats_db_name}.indi_result_oa_with_license stored as parquet as +select distinct r.id, coalesce(oa_with_license,0) as oa_with_license +from ${stats_db_name}.result r +left outer join (select distinct r.id, 1 as oa_with_license from ${stats_db_name}.result r +join ${stats_db_name}.result_licenses rl on rl.id=r.id where r.bestlicence='Open Access') tmp on r.id=tmp.id; /*EOS*/ + +drop table if exists ${stats_db_name}.indi_result_oa_without_license purge; /*EOS*/ +create table ${stats_db_name}.indi_result_oa_without_license stored as parquet as +with without_license as +(select distinct id from ${stats_db_name}.indi_result_oa_with_license +where oa_with_license=0) +select distinct r.id, coalesce(oa_without_license,0) as oa_without_license +from ${stats_db_name}.result r +left outer join (select distinct r.id, 1 as oa_without_license +from ${stats_db_name}.result r +join without_license wl on wl.id=r.id +where r.bestlicence='Open Access') tmp on r.id=tmp.id; /*EOS*/ + +drop table if exists ${stats_db_name}.indi_result_under_transformative purge; /*EOS*/ +create table ${stats_db_name}.indi_result_under_transformative stored as parquet as +with transformative_dois as ( + select distinct doi from stats_ext.transformative_facts) +select distinct r.id, coalesce(under_transformative,0) as under_transformative +from ${stats_db_name}.result r +left outer join ( + select distinct rp.id, 1 as under_transformative + from ${stats_db_name}.result_pids rp join ${stats_db_name}.result r on r.id=rp.id + join transformative_dois td on td.doi=rp.pid) tmp on r.id=tmp.id; /*EOS*/ \ No newline at end of file