Graph Dump - extended the test class

This commit is contained in:
Miriam Baglioni 2021-08-09 15:46:06 +02:00
parent eff499af9f
commit bc9e3a06ba
1 changed files with 374 additions and 235 deletions

View File

@ -145,227 +145,7 @@ public class DumpJobTest {
}
@Test
public void testDataset() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(90, verificationDataset.count());
// verificationDataset
// .filter("id = '50|DansKnawCris::1a960e20087cb46b93588e4e184e8a58'")
// .foreach((ForeachFunction<CommunityResult>) rec -> System.out.println(OBJECT_MAPPER.writeValueAsString(rec)));
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
.count());
Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
}
@Test
public void testDataset2All() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
Assertions.assertEquals(5, verificationDataset.count());
verificationDataset
.foreach((ForeachFunction<GraphResult>) res -> System.out.println(OBJECT_MAPPER.writeValueAsString(res)));
}
@Test
public void testDataset2Communities() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(0, verificationDataset.count());
verificationDataset.show(false);
}
@Test
public void testPublication() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(74, verificationDataset.count());
verificationDataset.show(false);
Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
}
@Test
public void testPublicationExtendedInstance2Community() throws JsonProcessingException {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(1, verificationDataset.count());
Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
//the common fields in the result have been checked with the test below. Now checking only
// community specific fields
CommunityResult cr = verificationDataset.first();
Assertions.assertEquals(1, cr.getContext().size());
Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
Assertions.assertEquals(1, cr.getCollectedfrom().size());
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
Assertions.assertEquals(1, cr.getInstance().size());
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
}
@Test
public void testPublicationExtendedInstance(){
public void testPublicationDump(){
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
.getPath();
@ -532,8 +312,379 @@ public class DumpJobTest {
Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
Assertions.assertEquals(null,instance.getArticleprocessingcharge());
Assertions.assertEquals("peerReviewed", instance.getRefereed());
}
@Test
public void testDatasetDump(){
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(false, sourcePath, workingDir.toString() + "/result",
communityMapPath, Dataset.class,
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<GraphResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
Assertions.assertEquals(1, verificationDataset.count());
Assertions.assertEquals(1, verificationDataset.filter("type = 'dataset'").count());
//the common fields in the result have been already checked. Now checking only
// community specific fields
GraphResult gr = verificationDataset.first();
Assertions.assertEquals(2, gr.getGeolocation().size());
Assertions.assertEquals(2, gr.getGeolocation().stream().filter(gl -> gl.getBox().equals("")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals("")).count());
Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals("")).count());
Assertions.assertEquals("1024Gb", gr.getSize());
Assertions.assertEquals("1.01", gr.getVersion());
Assertions.assertEquals(null, gr.getContainer());
Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
Assertions.assertEquals(null, gr.getProgrammingLanguage());
Assertions.assertEquals(null, gr.getDocumentationUrl());
Assertions.assertEquals(null, gr.getContactperson());
Assertions.assertEquals(null, gr.getContactgroup());
Assertions.assertEquals(null, gr.getTool());
}
@Test
public void testSoftwareDump(){
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(false, sourcePath, workingDir.toString() + "/result",
communityMapPath, Software.class,
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<GraphResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
Assertions.assertEquals(1, verificationDataset.count());
Assertions.assertEquals(1, verificationDataset.filter("type = 'software'").count());
GraphResult gr = verificationDataset.first();
Assertions.assertEquals(2, gr.getDocumentationUrl().size());
Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_1"));
Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_2"));
Assertions.assertEquals("code_repo", gr.getCodeRepositoryUrl());
Assertions.assertEquals("perl", gr.getProgrammingLanguage());
Assertions.assertEquals(null, gr.getContainer());
Assertions.assertEquals(null, gr.getContactperson());
Assertions.assertEquals(null, gr.getContactgroup());
Assertions.assertEquals(null, gr.getTool());
Assertions.assertEquals(null, gr.getGeolocation());
Assertions.assertEquals(null, gr.getSize());
Assertions.assertEquals(null, gr.getVersion());
}
@Test
public void testOrpDump(){
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(false, sourcePath, workingDir.toString() + "/result",
communityMapPath, OtherResearchProduct.class,
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<GraphResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
Assertions.assertEquals(1, verificationDataset.count());
Assertions.assertEquals(1, verificationDataset.filter("type = 'other'").count());
GraphResult gr = verificationDataset.first();
Assertions.assertEquals(2, gr.getContactperson().size());
Assertions.assertTrue(gr.getContactperson().contains(("contact_person1")));
Assertions.assertTrue(gr.getContactperson().contains(("contact_person2")));
Assertions.assertEquals(1, gr.getContactgroup().size());
Assertions.assertTrue(gr.getContactgroup().contains(("contact_group")));
Assertions.assertEquals(2, gr.getTool().size());
Assertions.assertTrue(gr.getTool().contains("tool1"));
Assertions.assertTrue(gr.getTool().contains("tool2"));
Assertions.assertEquals(null, gr.getContainer());
Assertions.assertEquals(null, gr.getDocumentationUrl());
Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
Assertions.assertEquals(null, gr.getProgrammingLanguage());
Assertions.assertEquals(null, gr.getGeolocation());
Assertions.assertEquals(null, gr.getSize());
Assertions.assertEquals(null, gr.getVersion());
}
@Test
public void testPublicationDumpCommunity() throws JsonProcessingException {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(1, verificationDataset.count());
Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
//the common fields in the result have been already checked. Now checking only
// community specific fields
CommunityResult cr = verificationDataset.first();
Assertions.assertEquals(1, cr.getContext().size());
Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
Assertions.assertEquals(1, cr.getCollectedfrom().size());
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
Assertions.assertEquals(1, cr.getInstance().size());
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
}
@Test
public void testDataset() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(90, verificationDataset.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
.count());
Assertions
.assertTrue(
verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
.count());
Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
}
@Test
public void testDataset2All() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
Assertions.assertEquals(5, verificationDataset.count());
}
@Test
public void testDataset2Communities() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(0, verificationDataset.count());
}
@Test
public void testPublication() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<CommunityResult> tmp = sc
.textFile(workingDir.toString() + "/result")
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
Assertions.assertEquals(74, verificationDataset.count());
verificationDataset.show(false);
Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
}
@Test
@ -566,9 +717,7 @@ public class DumpJobTest {
Assertions.assertEquals(6, verificationDataset.count());
Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
verificationDataset.show(false);
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
}
@ -602,9 +751,6 @@ public class DumpJobTest {
Assertions.assertEquals(3, verificationDataset.count());
Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
verificationDataset.show(false);
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
}
@ -621,7 +767,6 @@ public class DumpJobTest {
DumpProducts dump = new DumpProducts();
dump
.run(
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
@ -668,7 +813,7 @@ public class DumpJobTest {
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
Assertions.assertEquals(23, verificationDataset.count());
// verificationDataset.show(false);
Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
@ -688,12 +833,6 @@ public class DumpJobTest {
Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
// verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
// .filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
// .count()
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
}
}