Graph Dump - extended the test class
This commit is contained in:
parent
eff499af9f
commit
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@ -145,227 +145,7 @@ public class DumpJobTest {
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}
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}
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@Test
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@Test
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public void testDataset() {
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public void testPublicationDump(){
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(
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// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(90, verificationDataset.count());
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// verificationDataset
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// .filter("id = '50|DansKnawCris::1a960e20087cb46b93588e4e184e8a58'")
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// .foreach((ForeachFunction<CommunityResult>) rec -> System.out.println(OBJECT_MAPPER.writeValueAsString(rec)));
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
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.count());
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Assertions
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.assertTrue(
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verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
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.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
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.count());
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Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
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Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
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}
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@Test
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public void testDataset2All() {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(
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// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
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org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
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Assertions.assertEquals(5, verificationDataset.count());
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verificationDataset
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.foreach((ForeachFunction<GraphResult>) res -> System.out.println(OBJECT_MAPPER.writeValueAsString(res)));
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}
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@Test
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public void testDataset2Communities() {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(
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// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
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CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(0, verificationDataset.count());
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verificationDataset.show(false);
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}
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@Test
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public void testPublication() {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(
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// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
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false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
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CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(74, verificationDataset.count());
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verificationDataset.show(false);
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Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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}
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@Test
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public void testPublicationExtendedInstance2Community() throws JsonProcessingException {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
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CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<CommunityResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
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org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
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//the common fields in the result have been checked with the test below. Now checking only
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// community specific fields
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CommunityResult cr = verificationDataset.first();
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Assertions.assertEquals(1, cr.getContext().size());
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Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
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Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
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Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
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Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
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Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
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Assertions.assertEquals(1, cr.getCollectedfrom().size());
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Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
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Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
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Assertions.assertEquals(1, cr.getInstance().size());
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Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
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Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
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Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
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Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
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}
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@Test
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public void testPublicationExtendedInstance(){
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final String sourcePath = getClass()
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
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.getPath();
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.getPath();
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@ -519,7 +299,7 @@ public class DumpJobTest {
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Assertions.assertEquals(0, instance.getPid().size());
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Assertions.assertEquals(0, instance.getPid().size());
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Assertions.assertEquals(1, instance.getAlternateIdentifier().size());
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Assertions.assertEquals(1, instance.getAlternateIdentifier().size());
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Assertions.assertTrue(instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
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Assertions.assertTrue(instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
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&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
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&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
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Assertions.assertEquals(null, instance.getLicense());
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Assertions.assertEquals(null, instance.getLicense());
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Assertions.assertTrue(instance.getAccessright().getCode().equals(Constants.accessRightsCoarMap
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Assertions.assertTrue(instance.getAccessright().getCode().equals(Constants.accessRightsCoarMap
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.get(ModelConstants.ACCESS_RIGHT_OPEN)));
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.get(ModelConstants.ACCESS_RIGHT_OPEN)));
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@ -532,8 +312,379 @@ public class DumpJobTest {
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Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
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Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
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Assertions.assertEquals(null,instance.getArticleprocessingcharge());
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Assertions.assertEquals(null,instance.getArticleprocessingcharge());
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Assertions.assertEquals("peerReviewed", instance.getRefereed());
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Assertions.assertEquals("peerReviewed", instance.getRefereed());
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}
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@Test
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public void testDatasetDump(){
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(false, sourcePath, workingDir.toString() + "/result",
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communityMapPath, Dataset.class,
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GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'dataset'").count());
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//the common fields in the result have been already checked. Now checking only
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// community specific fields
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GraphResult gr = verificationDataset.first();
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Assertions.assertEquals(2, gr.getGeolocation().size());
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Assertions.assertEquals(2, gr.getGeolocation().stream().filter(gl -> gl.getBox().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals("")).count());
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Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals("")).count());
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Assertions.assertEquals("1024Gb", gr.getSize());
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Assertions.assertEquals("1.01", gr.getVersion());
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Assertions.assertEquals(null, gr.getContainer());
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Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
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Assertions.assertEquals(null, gr.getProgrammingLanguage());
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Assertions.assertEquals(null, gr.getDocumentationUrl());
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Assertions.assertEquals(null, gr.getContactperson());
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Assertions.assertEquals(null, gr.getContactgroup());
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Assertions.assertEquals(null, gr.getTool());
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}
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@Test
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public void testSoftwareDump(){
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
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.getPath();
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DumpProducts dump = new DumpProducts();
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dump
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.run(false, sourcePath, workingDir.toString() + "/result",
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communityMapPath, Software.class,
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GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<GraphResult> tmp = sc
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.textFile(workingDir.toString() + "/result")
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.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
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org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
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.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
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Assertions.assertEquals(1, verificationDataset.count());
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Assertions.assertEquals(1, verificationDataset.filter("type = 'software'").count());
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GraphResult gr = verificationDataset.first();
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||||||
|
Assertions.assertEquals(2, gr.getDocumentationUrl().size());
|
||||||
|
Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_1"));
|
||||||
|
Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_2"));
|
||||||
|
|
||||||
|
Assertions.assertEquals("code_repo", gr.getCodeRepositoryUrl());
|
||||||
|
|
||||||
|
Assertions.assertEquals("perl", gr.getProgrammingLanguage());
|
||||||
|
|
||||||
|
|
||||||
|
Assertions.assertEquals(null, gr.getContainer());
|
||||||
|
Assertions.assertEquals(null, gr.getContactperson());
|
||||||
|
Assertions.assertEquals(null, gr.getContactgroup());
|
||||||
|
Assertions.assertEquals(null, gr.getTool());
|
||||||
|
Assertions.assertEquals(null, gr.getGeolocation());
|
||||||
|
Assertions.assertEquals(null, gr.getSize());
|
||||||
|
Assertions.assertEquals(null, gr.getVersion());
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testOrpDump(){
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(false, sourcePath, workingDir.toString() + "/result",
|
||||||
|
communityMapPath, OtherResearchProduct.class,
|
||||||
|
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
|
||||||
|
JavaRDD<GraphResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, verificationDataset.count());
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, verificationDataset.filter("type = 'other'").count());
|
||||||
|
|
||||||
|
GraphResult gr = verificationDataset.first();
|
||||||
|
|
||||||
|
Assertions.assertEquals(2, gr.getContactperson().size());
|
||||||
|
Assertions.assertTrue(gr.getContactperson().contains(("contact_person1")));
|
||||||
|
Assertions.assertTrue(gr.getContactperson().contains(("contact_person2")));
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, gr.getContactgroup().size());
|
||||||
|
Assertions.assertTrue(gr.getContactgroup().contains(("contact_group")));
|
||||||
|
|
||||||
|
Assertions.assertEquals(2, gr.getTool().size());
|
||||||
|
Assertions.assertTrue(gr.getTool().contains("tool1"));
|
||||||
|
Assertions.assertTrue(gr.getTool().contains("tool2"));
|
||||||
|
|
||||||
|
|
||||||
|
Assertions.assertEquals(null, gr.getContainer());
|
||||||
|
Assertions.assertEquals(null, gr.getDocumentationUrl());
|
||||||
|
Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
|
||||||
|
Assertions.assertEquals(null, gr.getProgrammingLanguage());
|
||||||
|
Assertions.assertEquals(null, gr.getGeolocation());
|
||||||
|
Assertions.assertEquals(null, gr.getSize());
|
||||||
|
Assertions.assertEquals(null, gr.getVersion());
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testPublicationDumpCommunity() throws JsonProcessingException {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
||||||
|
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<CommunityResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, verificationDataset.count());
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
|
||||||
|
|
||||||
|
//the common fields in the result have been already checked. Now checking only
|
||||||
|
// community specific fields
|
||||||
|
|
||||||
|
CommunityResult cr = verificationDataset.first();
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, cr.getContext().size());
|
||||||
|
Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
|
||||||
|
Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
|
||||||
|
Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
|
||||||
|
Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
|
||||||
|
Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, cr.getCollectedfrom().size());
|
||||||
|
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
|
||||||
|
Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
|
||||||
|
|
||||||
|
Assertions.assertEquals(1, cr.getInstance().size());
|
||||||
|
Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
|
||||||
|
Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
|
||||||
|
Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
|
||||||
|
Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDataset() {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(
|
||||||
|
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
|
||||||
|
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<CommunityResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(90, verificationDataset.count());
|
||||||
|
|
||||||
|
Assertions
|
||||||
|
.assertTrue(
|
||||||
|
verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
|
||||||
|
.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
|
||||||
|
.count());
|
||||||
|
|
||||||
|
Assertions
|
||||||
|
.assertTrue(
|
||||||
|
verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
|
||||||
|
.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
|
||||||
|
.count());
|
||||||
|
|
||||||
|
Assertions
|
||||||
|
.assertTrue(
|
||||||
|
verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
|
||||||
|
.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
|
||||||
|
.count());
|
||||||
|
|
||||||
|
Assertions
|
||||||
|
.assertTrue(
|
||||||
|
verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
|
||||||
|
.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
|
||||||
|
.count());
|
||||||
|
|
||||||
|
Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
|
||||||
|
|
||||||
|
Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDataset2All() {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(
|
||||||
|
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
|
||||||
|
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
|
||||||
|
GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(5, verificationDataset.count());
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDataset2Communities() {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(
|
||||||
|
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
|
||||||
|
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<CommunityResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(0, verificationDataset.count());
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testPublication() {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
final String communityMapPath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DumpProducts dump = new DumpProducts();
|
||||||
|
dump
|
||||||
|
.run(
|
||||||
|
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
||||||
|
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
||||||
|
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<CommunityResult> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/result")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
|
||||||
|
|
||||||
|
org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
|
||||||
|
.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
|
||||||
|
|
||||||
|
Assertions.assertEquals(74, verificationDataset.count());
|
||||||
|
verificationDataset.show(false);
|
||||||
|
|
||||||
|
Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
|
@ -566,9 +717,7 @@ public class DumpJobTest {
|
||||||
Assertions.assertEquals(6, verificationDataset.count());
|
Assertions.assertEquals(6, verificationDataset.count());
|
||||||
|
|
||||||
Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
|
Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
|
||||||
verificationDataset.show(false);
|
|
||||||
|
|
||||||
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
|
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -602,9 +751,6 @@ public class DumpJobTest {
|
||||||
Assertions.assertEquals(3, verificationDataset.count());
|
Assertions.assertEquals(3, verificationDataset.count());
|
||||||
|
|
||||||
Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
|
Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
|
||||||
verificationDataset.show(false);
|
|
||||||
|
|
||||||
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
|
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
@ -621,7 +767,6 @@ public class DumpJobTest {
|
||||||
DumpProducts dump = new DumpProducts();
|
DumpProducts dump = new DumpProducts();
|
||||||
dump
|
dump
|
||||||
.run(
|
.run(
|
||||||
// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
|
||||||
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
|
||||||
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
|
||||||
|
|
||||||
|
|
@ -668,7 +813,7 @@ public class DumpJobTest {
|
||||||
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
|
.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
|
||||||
|
|
||||||
Assertions.assertEquals(23, verificationDataset.count());
|
Assertions.assertEquals(23, verificationDataset.count());
|
||||||
// verificationDataset.show(false);
|
|
||||||
|
|
||||||
Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
|
Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
|
||||||
|
|
||||||
|
|
@ -688,12 +833,6 @@ public class DumpJobTest {
|
||||||
Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
|
Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
// verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
|
|
||||||
// .filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
|
|
||||||
// .count()
|
|
||||||
|
|
||||||
//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
|
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue