[BipFinder] put in common package BipFinder model

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipfinder/SparkAtomicActionScoreJob.java

@@ -1,7 +1,7 @@
 
 package eu.dnetlib.dhp.actionmanager.bipfinder;
 
-import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
+import static eu.dnetlib.dhp.actionmanager.bipmodel.Constants.*;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;
@@ -24,8 +24,8 @@ import org.slf4j.LoggerFactory;
 
 import com.fasterxml.jackson.databind.ObjectMapper;
 
-import eu.dnetlib.dhp.actionmanager.common.BipDeserialize;
+import eu.dnetlib.dhp.actionmanager.bipmodel.BipDeserialize;
-import eu.dnetlib.dhp.actionmanager.common.BipScore;
+import eu.dnetlib.dhp.actionmanager.bipmodel.BipScore;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.common.HdfsSupport;
 import eu.dnetlib.dhp.schema.action.AtomicAction;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipmodel/BipDeserialize.java

@@ -1,5 +1,5 @@
 
-package eu.dnetlib.dhp.actionmanager.createunresolvedentities.model;
+package eu.dnetlib.dhp.actionmanager.bipmodel;
 
 import java.io.Serializable;
 import java.util.ArrayList;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipmodel/BipScore.java

@@ -1,5 +1,5 @@
 
-package eu.dnetlib.dhp.actionmanager.createunresolvedentities.model;
+package eu.dnetlib.dhp.actionmanager.bipmodel;
 
 import java.io.Serializable;
 import java.util.List;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipmodel/Constants.java

@@ -1,5 +1,5 @@
 
-package eu.dnetlib.dhp.actionmanager.common;
+package eu.dnetlib.dhp.actionmanager.bipmodel;
 
 import java.util.Optional;
 

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipmodel/KeyValue.java

@@ -1,5 +1,5 @@
 
-package eu.dnetlib.dhp.actionmanager.bipfinder;
+package eu.dnetlib.dhp.actionmanager.bipmodel;
 
 import java.io.Serializable;
 

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipmodel/Score.java

@@ -1,5 +1,5 @@
 
-package eu.dnetlib.dhp.actionmanager.bipfinder;
+package eu.dnetlib.dhp.actionmanager.bipmodel;
 
 import java.io.Serializable;
 import java.util.List;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/common/BipDeserialize.java

@@ -1,30 +0,0 @@
-
-package eu.dnetlib.dhp.actionmanager.common;
-
-import java.io.Serializable;
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-
-import eu.dnetlib.dhp.actionmanager.bipfinder.Score;
-
-/**
- * Class that maps the model of the bipFinder! input data.
- * Only needed for deserialization purposes
- */
-
-public class BipDeserialize extends HashMap<String, List<Score>> implements Serializable {
-
-	public BipDeserialize() {
-		super();
-	}
-
-	public List<Score> get(String key) {
-
-		if (super.get(key) == null) {
-			return new ArrayList<>();
-		}
-		return super.get(key);
-	}
-
-}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/common/BipScore.java

@@ -1,32 +0,0 @@
-
-package eu.dnetlib.dhp.actionmanager.common;
-
-import java.io.Serializable;
-import java.util.List;
-
-import eu.dnetlib.dhp.actionmanager.bipfinder.Score;
-
-/**
- * Rewriting of the bipFinder input data by extracting the identifier of the result (doi)
- */
-
-public class BipScore implements Serializable {
-	private String id; // doi
-	private List<Score> scoreList; // unit as given in the inputfile
-
-	public String getId() {
-		return id;
-	}
-
-	public void setId(String id) {
-		this.id = id;
-	}
-
-	public List<Score> getScoreList() {
-		return scoreList;
-	}
-
-	public void setScoreList(List<Score> scoreList) {
-		this.scoreList = scoreList;
-	}
-}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/createunresolvedentities/PrepareBipFinder.java

@@ -1,8 +1,8 @@
 
 package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
 
-import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
+import static eu.dnetlib.dhp.actionmanager.bipmodel.Constants.*;
-import static eu.dnetlib.dhp.actionmanager.common.Constants.UPDATE_CLASS_NAME;
+import static eu.dnetlib.dhp.actionmanager.bipmodel.Constants.UPDATE_CLASS_NAME;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;
@@ -23,8 +23,8 @@ import org.slf4j.LoggerFactory;
 
 import com.fasterxml.jackson.databind.ObjectMapper;
 
-import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.BipDeserialize;
+import eu.dnetlib.dhp.actionmanager.bipmodel.BipDeserialize;
-import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.BipScore;
+import eu.dnetlib.dhp.actionmanager.bipmodel.BipScore;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.common.HdfsSupport;
 import eu.dnetlib.dhp.schema.common.ModelConstants;
@@ -88,6 +88,7 @@ public class PrepareBipFinder implements Serializable {
 				BipScore bs = new BipScore();
 				bs.setId(key);
 				bs.setScoreList(entry.get(key));
+
 				return bs;
 			}).collect(Collectors.toList()).iterator()).rdd(), Encoders.bean(BipScore.class))
 			.map((MapFunction<BipScore, Result>) v -> {

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/createunresolvedentities/PrepareFOSSparkJob.java

@@ -1,7 +1,7 @@
 
 package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
 
-import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
+import static eu.dnetlib.dhp.actionmanager.bipmodel.Constants.*;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/createunresolvedentities/SparkSaveUnresolved.java

@@ -1,7 +1,7 @@
 
 package eu.dnetlib.dhp.actionmanager.createunresolvedentities;
 
-import static eu.dnetlib.dhp.actionmanager.common.Constants.*;
+import static eu.dnetlib.dhp.actionmanager.bipmodel.Constants.*;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/createunresolvedentities/model/KeyValue.java

@@ -1,26 +0,0 @@
-
-package eu.dnetlib.dhp.actionmanager.createunresolvedentities.model;
-
-import java.io.Serializable;
-
-public class KeyValue implements Serializable {
-
-	private String key;
-	private String value;
-
-	public String getKey() {
-		return key;
-	}
-
-	public void setKey(String key) {
-		this.key = key;
-	}
-
-	public String getValue() {
-		return value;
-	}
-
-	public void setValue(String value) {
-		this.value = value;
-	}
-}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/createunresolvedentities/model/Score.java

@@ -1,30 +0,0 @@
-
-package eu.dnetlib.dhp.actionmanager.createunresolvedentities.model;
-
-import java.io.Serializable;
-import java.util.List;
-
-/**
- * represents the score in the input file
- */
-public class Score implements Serializable {
-
-	private String id;
-	private List<KeyValue> unit;
-
-	public String getId() {
-		return id;
-	}
-
-	public void setId(String id) {
-		this.id = id;
-	}
-
-	public List<KeyValue> getUnit() {
-		return unit;
-	}
-
-	public void setUnit(List<KeyValue> unit) {
-		this.unit = unit;
-	}
-}