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[Dump] remove non needed class

This commit is contained in:
Miriam Baglioni 2022-04-21 11:12:35 +02:00
parent 38b8d324af
commit b33156c2ee
2 changed files with 0 additions and 119 deletions
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118
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults2.java
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@ -1,118 +0,0 @@
package eu.dnetlib.dhp.oa.graph.dump.funderresults;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.io.Serializable;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.FlatMapFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.*;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.oa.graph.dump.Utils;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
/**
* Splits the dumped results by funder and stores them in a folder named as the funder nsp (for all the funders, but the EC
* for the EC it specifies also the fundingStream (FP7 or H2020)
*/
public class SparkDumpFunderResults2 implements Serializable {
private static final Logger log = LoggerFactory.getLogger(SparkDumpFunderResults2.class);
public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils
.toString(
SparkDumpFunderResults2.class
.getResourceAsStream(
"/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String inputPath = parser.get("sourcePath");
log.info("inputPath: {}", inputPath);
final String outputPath = parser.get("outputPath");
log.info("outputPath: {}", outputPath);
final String graphPath = parser.get("graphPath");
log.info("relationPath: {}", graphPath);
SparkConf conf = new SparkConf();
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
Utils.removeOutputDir(spark, outputPath);
writeResultProjectList(spark, inputPath, outputPath);
});
}
private static void writeResultProjectList(SparkSession spark, String inputPath, String outputPath) {
Dataset<CommunityResult> result = Utils
.readPath(spark, inputPath + "/publication", CommunityResult.class)
.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
.union(Utils.readPath(spark, inputPath + "/otherresearchproduct", CommunityResult.class))
.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
List<String> funderList = result
.flatMap((FlatMapFunction<CommunityResult, String>) cr -> cr.getProjects().stream().map(p -> {
String fName = p.getFunder().getShortName();
if (fName.equalsIgnoreCase("ec")) {
fName += "_" + p.getFunder().getFundingStream();
}
return fName;
}).collect(Collectors.toList()).iterator(), Encoders.STRING())
.distinct()
.collectAsList();
funderList.forEach(funder -> {
dumpResults(funder, result, outputPath);
});
}
private static void dumpResults(String funder, Dataset<CommunityResult> results, String outputPath) {
results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
if (!Optional.ofNullable(r.getProjects()).isPresent()) {
return null;
}
for (Project p : r.getProjects()) {
String fName = p.getFunder().getShortName();
if (fName.equalsIgnoreCase("ec")) {
fName += "_" + p.getFunder().getFundingStream();
}
if (fName.equalsIgnoreCase(funder)) {
return r;
}
}
return null;
}, Encoders.bean(CommunityResult.class))
.filter(Objects::nonNull)
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(outputPath + "/" + funder);
}
}

1
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/projectssubset/ProjectsSubsetSparkJob.java
View File

@ -71,7 +71,6 @@ public class ProjectsSubsetSparkJob implements Serializable {
Dataset<String> projectList = spark.read().textFile(projectListPath);
// projectList.show(false);
Dataset<Project> projects;
projects = Utils.readPath(spark, inputPath, Project.class);