diff --git a/dhp-workflows/dhp-stats-monitor-update/pom.xml b/dhp-workflows/dhp-stats-monitor-update/pom.xml new file mode 100644 index 000000000..f63c7568a --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/pom.xml @@ -0,0 +1,32 @@ + + + + dhp-workflows + eu.dnetlib.dhp + 1.2.4-SNAPSHOT + + 4.0.0 + dhp-stats-monitor-update + + + org.apache.spark + spark-core_2.11 + + + org.apache.spark + spark-sql_2.11 + + + + + + pl.project13.maven + git-commit-id-plugin + 2.1.11 + + false + + + + + diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/config-default.xml b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/config-default.xml new file mode 100644 index 000000000..b2a1322e6 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/config-default.xml @@ -0,0 +1,30 @@ + + + jobTracker + ${jobTracker} + + + nameNode + ${nameNode} + + + oozie.use.system.libpath + true + + + oozie.action.sharelib.for.spark + spark2 + + + hive_metastore_uris + thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083 + + + hive_jdbc_url + jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000/;UseNativeQuery=1;?spark.executor.memory=22166291558;spark.yarn.executor.memoryOverhead=3225;spark.driver.memory=15596411699;spark.yarn.driver.memoryOverhead=1228 + + + oozie.wf.workflow.notification.url + {serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status + + \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh new file mode 100644 index 000000000..1587f7152 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh @@ -0,0 +1,75 @@ +export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs +export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) +if ! [ -L $link_folder ] +then + rm -Rf "$link_folder" + ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} +fi + +#export HADOOP_USER_NAME=$2 + +function copydb() { + + export HADOOP_USER="dimitris.pierrakos" + export HADOOP_USER_NAME='dimitris.pierrakos' + + db=$1 + FILE=("hive_wf_tmp_"$RANDOM) + hdfs dfs -mkdir hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/ + + # change ownership to impala +# hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db + hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/ + + + # copy the databases from ocean to impala + echo "copying $db" + hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/ + + hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db + + # drop tables from db + for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`; + do + `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop table $i;"`; + done + + # drop views from db + for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`; + do + `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop view $i;"`; + done + + # delete the database + impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade"; + + # create the databases + impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}"; + + impala-shell -q "INVALIDATE METADATA" + echo "creating schema for ${db}" + for (( k = 0; k < 5; k ++ )); do + for i in `impala-shell -d ${db} --delimited -q "show tables"`; + do + impala-shell -d ${db} --delimited -q "show create table $i"; + done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -c -f - + done + + # load the data from /tmp in the respective tables + echo "copying data in tables and computing stats" + for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`; + do + impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/$FILE/${db}.db/$i' into table $i"; + impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i"; + done + + # deleting the remaining directory from hdfs +hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/$FILE/${db}.db +} + +MONITOR_DB=$1 +#HADOOP_USER_NAME=$2 + +copydb $MONITOR_DB'_institutions' +copydb $MONITOR_DB + diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/finalizeImpalaCluster.sh b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/finalizeImpalaCluster.sh new file mode 100644 index 000000000..cb5452154 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/finalizeImpalaCluster.sh @@ -0,0 +1,57 @@ +export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs +export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) +if ! [ -L $link_folder ] +then + rm -Rf "$link_folder" + ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} +fi +# +#function createShadowDB() { +# SOURCE=$1 +# SHADOW=$2 +# +# # drop views from db +# for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} --delimited -q "show tables"`; +# do +# `impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "drop view $i;"`; +# done +# +# impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database ${SHADOW} CASCADE"; +# impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${SHADOW}"; +## impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "show tables" | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f - +# impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f - +#} +# +#MONITOR_DB=$1 +#MONITOR_DB_SHADOW=$2 +# +#createShadowDB $MONITOR_DB'_institutions' $MONITOR_DB'_institutions_shadow' +#createShadowDB $MONITOR_DB $MONITOR_DB'_shadow' + +SOURCE=$1 +PRODUCTION=$2 +echo ${SOURCE} +echo ${PRODUCTION} + +#echo "Updating ${PRODUCTION} monitor database old cluster" +#impala-shell -q "create database if not exists ${PRODUCTION}" +#impala-shell -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -c -f - +#impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f - +# +#echo "Updating ${PRODUCTION}_institutions database old cluster" +#impala-shell -q "create database if not exists ${PRODUCTION}_institutions" +#impala-shell -d ${PRODUCTION}_institutions -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}_institutions./" | sed "s/$/;/" | impala-shell -c -f - +#impala-shell -d ${SOURCE}_institutions -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}_institutions.\1 as select * from ${SOURCE}_institutions.\1;/" | impala-shell -c -f - +#echo "Production insitutions db ready!" + +echo "Updating ${PRODUCTION} monitor database" +impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${PRODUCTION}" +impala-shell -i impala-cluster-dn1.openaire.eu -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - +impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - +echo "Production monitor db ready!" + +echo "Updating ${PRODUCTION}_institutions database" +impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${PRODUCTION}_institutions" +impala-shell -i impala-cluster-dn1.openaire.eu -d ${PRODUCTION}_institutions -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}_institutions./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - +impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE}_institutions -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}_institutions.\1 as select * from ${SOURCE}_institutions.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f - +echo "Production insitutions db ready!" \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/monitor.sh b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/monitor.sh new file mode 100644 index 000000000..50f5983e4 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/monitor.sh @@ -0,0 +1,60 @@ +export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs +export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami) +if ! [ -L $link_folder ] +then + rm -Rf "$link_folder" + ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder} +fi + +export SOURCE=$1 +export TARGET=$2 +export SHADOW=$3 +export SCRIPT_PATH=$4 +export SCRIPT_PATH2=$5 +export SCRIPT_PATH2=$6 + +export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228" +export HADOOP_USER_NAME="oozie" + +echo "Getting file from " $4 +hdfs dfs -copyToLocal $4 + +echo "Getting file from " $5 +hdfs dfs -copyToLocal $5 + +echo "Getting file from " $6 +hdfs dfs -copyToLocal $6 + +#update Monitor DB +cat updateMonitorDBAll.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" > foo +hive $HIVE_OPTS -f foo + +#update Institutions DB +cat updateMonitorDB_institutions.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo +hive $HIVE_OPTS -f foo +cat updateMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_institutions/g1" > foo +hive $HIVE_OPTS -f foo + + + +echo "Hive shell finished" + +#echo "Updating shadow monitor insitutions database" +#hive -e "drop database if exists ${SHADOW}_institutions cascade" +#hive -e "create database if not exists ${SHADOW}_institutions" +#hive $HIVE_OPTS --database ${2}_institutions -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}_institutions.\1 as select * from ${2}_institutions.\1;/" > foo +#hive -f foo +#echo "Shadow db monitor insitutions ready!" +# +##update Monitor DB +#cat updateMonitorDBAll.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" > foo +#hive $HIVE_OPTS -f foo +# +#echo "Hive shell finished" +# +#echo "Updating shadow monitor database" +#hive -e "drop database if exists ${SHADOW} cascade" +#hive -e "create database if not exists ${SHADOW}" +#hive $HIVE_OPTS --database ${2} -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${2}.\1;/" > foo +#hive -f foo +#echo "Shadow db monitor insitutions ready!" diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB.sql b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB.sql new file mode 100644 index 000000000..321fba87a --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB.sql @@ -0,0 +1,278 @@ +--drop database if exists TARGET cascade; +--create database if not exists TARGET; +-- +--create view if not exists TARGET.category as select * from SOURCE.category; +--create view if not exists TARGET.concept as select * from SOURCE.concept; +--create view if not exists TARGET.context as select * from SOURCE.context; +--create view if not exists TARGET.country as select * from SOURCE.country; +--create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp; +--create view if not exists TARGET.creation_date as select * from SOURCE.creation_date; +--create view if not exists TARGET.funder as select * from SOURCE.funder; +--create view if not exists TARGET.fundref as select * from SOURCE.fundref; +--create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture; +--create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure; +--create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents; +--create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers; +--create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft; +--create view if not exists TARGET.hrrst as select * from SOURCE.hrrst; +-- +--create table TARGET.result stored as parquet as +-- select distinct * from ( +-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id) +-- union all +-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) +-- union all +-- select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in ( +-- 'openorgs____::b84450f9864182c67b8611b5593f4250', --"Athena Research and Innovation Center In Information Communication & Knowledge Technologies', --ARC" +-- 'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975', --National Research Council +-- 'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ?? +-- 'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University +-- 'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade +-- 'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki +-- 'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho +-- 'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid +-- 'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen +-- 'openorgs____::c0286313e36479eff8676dba9b724b40', --National and Kapodistrian University of Athens +-- -- 'openorgs____::c80a8243a5e5c620d7931c88d93bf17a', --Université Paris Diderot +-- 'openorgs____::c08634f0a6b0081c3dc6e6c93a4314f3', --Bielefeld University +-- 'openorgs____::6fc85e4a8f7ecaf4b0c738d010e967ea', --University of Southern Denmark +-- 'openorgs____::3d6122f87f9a97a99d8f6e3d73313720', --Humboldt-Universität zu Berlin +-- 'openorgs____::16720ada63d0fa8ca41601feae7d1aa5', --TU Darmstadt +-- 'openorgs____::ccc0a066b56d2cfaf90c2ae369df16f5', --KU Leuven +-- 'openorgs____::4c6f119632adf789746f0a057ed73e90', --University of the Western Cape +-- 'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute +-- 'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University +-- 'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg +-- 'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII) +-- 'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr +-- 'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw +-- 'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly +-- 'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete +-- 'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus +-- 'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras +-- 'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki +-- 'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank +-- 'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech +-- 'openorgs____::e15adb13c4dadd49de4d35c39b5da93a', -- Nanyang Technological University +-- 'openorgs____::4b34103bde246228fcd837f5f1bf4212', -- Autonomous University of Barcelona +-- 'openorgs____::72ec75fcfc4e0df1a76dc4c49007fceb', -- McMaster University +-- 'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia +-- 'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University +-- 'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje +-- 'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan +-- 'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork +-- 'openorgs____::38d7097854736583dde879d12dacafca' -- Brown University +-- 'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech +-- 'openorgs____::2530baca8a15936ba2e3297f2bce2e7e', -- University of Cape Town +-- 'openorgs____::d11f981828c485cd23d93f7f24f24db1', -- Technological University Dublin +-- 'openorgs____::5e6bf8962665cdd040341171e5c631d8', -- Delft University of Technology +-- 'openorgs____::846cb428d3f52a445f7275561a7beb5d', -- University of Manitoba +-- 'openorgs____::eb391317ed0dc684aa81ac16265de041', -- Universitat Rovira i Virgili +-- 'openorgs____::66aa9fc2fceb271423dfabcc38752dc0', -- Lund University +-- 'openorgs____::3cff625a4370d51e08624cc586138b2f' -- IMT Atlantique +-- ) )) foo; +-- +--ANALYZE TABLE TARGET.result COMPUTE STATISTICS; + +create view if not exists TARGET.category as select * from SOURCE.category; +create view if not exists TARGET.concept as select * from SOURCE.concept; +create view if not exists TARGET.context as select * from SOURCE.context; +create view if not exists TARGET.country as select * from SOURCE.country; +create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp; +create view if not exists TARGET.creation_date as select * from SOURCE.creation_date; +create view if not exists TARGET.funder as select * from SOURCE.funder; +create view if not exists TARGET.fundref as select * from SOURCE.fundref; +create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture; +create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure; +create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents; +create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers; +create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft; +create view if not exists TARGET.hrrst as select * from SOURCE.hrrst; +--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates; + +create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS; + +create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS; + +create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS; + +create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS; + +create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS; + +create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS; + +create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS; + +create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS; + +create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS; + +create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS; + +create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS; + +create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS; + +create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized; +--ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS; + +create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS; + +create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS; + +create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS; + +create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS; + +create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS; + +create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS; + +create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS; + +create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS; + +create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS; + +create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS; + +create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS; + +create table TARGET.result_instance stored as parquet as select * from SOURCE.result_instance orig where exists (select 1 from TARGET.result r where r.id=orig.id); +create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id); + +create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result); +create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result); +create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou; +drop view TARGET.foo1; +drop view TARGET.foo2; +--ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS; + +-- datasources +create view if not exists TARGET.datasource as select * from SOURCE.datasource; +create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids; +create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations; +create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources; + +create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources; +--ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS; + +-- organizations +create view if not exists TARGET.organization as select * from SOURCE.organization; +create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources; +create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids; +create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects; +create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources; + +-- projects +create view if not exists TARGET.project as select * from SOURCE.project; +create view if not exists TARGET.project_oids as select * from SOURCE.project_oids; +create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations; +create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount; +create view if not exists TARGET.project_classification as select * from SOURCE.project_classification; +create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution; + +create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects; +--ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS; + +-- indicators +-- Sprint 1 ---- +create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS; +create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS; +-- Sprint 2 ---- +create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS; +create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS; +create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS; +create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS; +---- Sprint 3 ---- +create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS; +create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab; +create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab; +create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org; +create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country; +create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab; +create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab; +---- Sprint 4 ---- +create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS; +create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS; +create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS; +---- Sprint 5 ---- +create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS; +---- Sprint 6 ---- +create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS; +create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS; +---- Sprint 7 ---- +create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS; +create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness; +create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr; +create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year; +create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub; +create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year; +create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year; +create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable; +create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess; +create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year; +create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS; +create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS; +create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS; +create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS; +create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS; +create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS; +create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id); diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDBAll.sql b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDBAll.sql new file mode 100644 index 000000000..35ab42029 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDBAll.sql @@ -0,0 +1,297 @@ +drop database if exists TARGET cascade; +create database if not exists TARGET; + +create view if not exists TARGET.category as select * from SOURCE.category; +create view if not exists TARGET.concept as select * from SOURCE.concept; +create view if not exists TARGET.context as select * from SOURCE.context; +create view if not exists TARGET.country as select * from SOURCE.country; +create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp; +create view if not exists TARGET.creation_date as select * from SOURCE.creation_date; +create view if not exists TARGET.funder as select * from SOURCE.funder; +create view if not exists TARGET.fundref as select * from SOURCE.fundref; +create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture; +create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure; +create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents; +create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers; +create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft; +create view if not exists TARGET.hrrst as select * from SOURCE.hrrst; +--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates; + +create table TARGET.result stored as parquet as + select distinct * from ( + select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id) + union all + select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) + union all + select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in ( + 'openorgs____::b84450f9864182c67b8611b5593f4250', --"Athena Research and Innovation Center In Information Communication & Knowledge Technologies', --ARC" + 'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975', --National Research Council + 'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ?? + 'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University + 'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade + 'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki + 'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho + 'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid + 'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen + 'openorgs____::c0286313e36479eff8676dba9b724b40', --National and Kapodistrian University of Athens + -- 'openorgs____::c80a8243a5e5c620d7931c88d93bf17a', --Université Paris Diderot + 'openorgs____::c08634f0a6b0081c3dc6e6c93a4314f3', --Bielefeld University + 'openorgs____::6fc85e4a8f7ecaf4b0c738d010e967ea', --University of Southern Denmark + 'openorgs____::3d6122f87f9a97a99d8f6e3d73313720', --Humboldt-Universität zu Berlin + 'openorgs____::16720ada63d0fa8ca41601feae7d1aa5', --TU Darmstadt + 'openorgs____::ccc0a066b56d2cfaf90c2ae369df16f5', --KU Leuven + 'openorgs____::4c6f119632adf789746f0a057ed73e90', --University of the Western Cape + 'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute + 'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University + 'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg + 'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII) + 'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr + 'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw + 'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly + 'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete + 'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus + 'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras + 'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki + 'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank + 'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech + 'openorgs____::e15adb13c4dadd49de4d35c39b5da93a', -- Nanyang Technological University + 'openorgs____::4b34103bde246228fcd837f5f1bf4212', -- Autonomous University of Barcelona + 'openorgs____::72ec75fcfc4e0df1a76dc4c49007fceb', -- McMaster University + 'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia + 'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University + 'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje + 'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan + 'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork + 'openorgs____::38d7097854736583dde879d12dacafca', -- Brown University + 'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech + 'openorgs____::2530baca8a15936ba2e3297f2bce2e7e', -- University of Cape Town + 'openorgs____::d11f981828c485cd23d93f7f24f24db1', -- Technological University Dublin + 'openorgs____::5e6bf8962665cdd040341171e5c631d8', -- Delft University of Technology + 'openorgs____::846cb428d3f52a445f7275561a7beb5d', -- University of Manitoba + 'openorgs____::eb391317ed0dc684aa81ac16265de041', -- Universitat Rovira i Virgili + 'openorgs____::66aa9fc2fceb271423dfabcc38752dc0', -- Lund University + 'openorgs____::3cff625a4370d51e08624cc586138b2f', -- IMT Atlantique + 'openorgs____::c0b262bd6eab819e4c994914f9c010e2', -- National Institute of Geophysics and Volcanology + 'openorgs____::1624ff7c01bb641b91f4518539a0c28a', -- Vrije Universiteit Amsterdam + 'openorgs____::4d4051b56708688235252f1d8fddb8c1', -- Iscte - Instituto Universitário de Lisboa + 'openorgs____::ab4ac74c35fa5dada770cf08e5110fab', -- Universidade Católica Portuguesa + 'openorgs____::4d4051b56708688235252f1d8fddb8c1', -- Iscte - Instituto Universitário de Lisboa + 'openorgs____::5d55fb216b14691cf68218daf5d78cd9', -- Munster Technological University + 'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9', -- Cardiff University + 'openorgs____::8839b55dae0c84d56fd533f52d5d483a', -- Leibniz Institute of Ecological Urban and Regional Development + 'openorgs____::526468206bca24c1c90da6a312295cf4', -- Cyprus University of Technology + 'openorgs____::b5ca9d4340e26454e367e2908ef3872f', -- Alma Mater Studiorum University of Bologna + 'openorgs____::a6340e6ecf60f6bba163659df985b0f2' -- TU Dresden + ))) foo; + +--ANALYZE TABLE TARGET.result COMPUTE STATISTICS; + +create view if not exists TARGET.category as select * from SOURCE.category; +create view if not exists TARGET.concept as select * from SOURCE.concept; +create view if not exists TARGET.context as select * from SOURCE.context; +create view if not exists TARGET.country as select * from SOURCE.country; +create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp; +create view if not exists TARGET.creation_date as select * from SOURCE.creation_date; +create view if not exists TARGET.funder as select * from SOURCE.funder; +create view if not exists TARGET.fundref as select * from SOURCE.fundref; +create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture; +create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure; +create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents; +create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers; +create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft; +create view if not exists TARGET.hrrst as select * from SOURCE.hrrst; +--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates; + +create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS; + +create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS; + +create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS; + +create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS; + +create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS; + +create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS; + +create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS; + +create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS; + +create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS; + +create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS; + +create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS; + +create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS; + +create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized; +--ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS; + +create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS; + +create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS; + +create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS; + +create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS; + +create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS; + +create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS; + +create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS; + +create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS; + +create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS; + +create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS; + +create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_accessroute COMPUTE STATISTICS; + +create table TARGET.result_instance stored as parquet as select * from SOURCE.result_instance orig where exists (select 1 from TARGET.result r where r.id=orig.id); +create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id); + + +create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result); +create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result); +create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou; +drop view TARGET.foo1; +drop view TARGET.foo2; +--ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS; + +-- datasources +create view if not exists TARGET.datasource as select * from SOURCE.datasource; +create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids; +create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations; +create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources; + +create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources; +--ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS; + +-- organizations +create view if not exists TARGET.organization as select * from SOURCE.organization; +create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources; +create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids; +create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects; +create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources; + +-- projects +create view if not exists TARGET.project as select * from SOURCE.project; +create view if not exists TARGET.project_oids as select * from SOURCE.project_oids; +create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations; +create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount; +create view if not exists TARGET.project_classification as select * from SOURCE.project_classification; +create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution; + +create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects; +--ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS; + +-- indicators +-- Sprint 1 ---- +create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS; +create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS; +-- Sprint 2 ---- +create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS; +create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS; +create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS; +create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS; +---- Sprint 3 ---- +create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS; +create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab; +create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab; +create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org; +create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country; +create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab; +create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab; +---- Sprint 4 ---- +create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS; +create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS; +create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS; +---- Sprint 5 ---- +create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS; +---- Sprint 6 ---- +create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS; +create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_bronze_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS; +create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); +--ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS; +---- Sprint 7 ---- +create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS; +create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS; +create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness; +create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr; +create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year; +create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub; +create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year; +create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year; +create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable; +create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess; +create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year; +create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS; +create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS; +create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS; +create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_impact_measures COMPUTE STATISTICS; +create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS; +create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS; +--create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id); +--create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness; +--create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess; +--create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable; +--create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness; +--create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess; +--create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable; \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB_institutions.sql b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB_institutions.sql new file mode 100644 index 000000000..5ab8c88b5 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/scripts/updateMonitorDB_institutions.sql @@ -0,0 +1,67 @@ +drop database if exists TARGET cascade; +create database if not exists TARGET; + +create table TARGET.result stored as parquet as + select distinct * from ( + select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in ( + 'openorgs____::b84450f9864182c67b8611b5593f4250', --"Athena Research and Innovation Center In Information Communication & Knowledge Technologies', --ARC" + 'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975', --National Research Council + 'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ?? + 'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University + 'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade + 'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki + 'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho + 'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid + 'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen + 'openorgs____::c0286313e36479eff8676dba9b724b40', --National and Kapodistrian University of Athens + -- 'openorgs____::c80a8243a5e5c620d7931c88d93bf17a', --Université Paris Diderot + 'openorgs____::c08634f0a6b0081c3dc6e6c93a4314f3', --Bielefeld University + 'openorgs____::6fc85e4a8f7ecaf4b0c738d010e967ea', --University of Southern Denmark + 'openorgs____::3d6122f87f9a97a99d8f6e3d73313720', --Humboldt-Universität zu Berlin + 'openorgs____::16720ada63d0fa8ca41601feae7d1aa5', --TU Darmstadt + 'openorgs____::ccc0a066b56d2cfaf90c2ae369df16f5', --KU Leuven + 'openorgs____::4c6f119632adf789746f0a057ed73e90', --University of the Western Cape + 'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute + 'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University + 'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg + 'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII) + 'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr + 'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw + 'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly + 'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete + 'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus + 'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras + 'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki + 'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank + 'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech + 'openorgs____::e15adb13c4dadd49de4d35c39b5da93a', -- Nanyang Technological University + 'openorgs____::4b34103bde246228fcd837f5f1bf4212', -- Autonomous University of Barcelona + 'openorgs____::72ec75fcfc4e0df1a76dc4c49007fceb', -- McMaster University + 'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia + 'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University + 'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje + 'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan + 'openorgs____::b8b8ca674452579f3f593d9f5e557483', -- University College Cork + 'openorgs____::38d7097854736583dde879d12dacafca', -- Brown University + 'openorgs____::57784c9e047e826fefdb1ef816120d92', --Arts et Métiers ParisTech + 'openorgs____::2530baca8a15936ba2e3297f2bce2e7e', -- University of Cape Town + 'openorgs____::d11f981828c485cd23d93f7f24f24db1', -- Technological University Dublin + 'openorgs____::5e6bf8962665cdd040341171e5c631d8', -- Delft University of Technology + 'openorgs____::846cb428d3f52a445f7275561a7beb5d', -- University of Manitoba + 'openorgs____::eb391317ed0dc684aa81ac16265de041', -- Universitat Rovira i Virgili + 'openorgs____::66aa9fc2fceb271423dfabcc38752dc0', -- Lund University + 'openorgs____::3cff625a4370d51e08624cc586138b2f', -- IMT Atlantique + 'openorgs____::c0b262bd6eab819e4c994914f9c010e2', -- National Institute of Geophysics and Volcanology + 'openorgs____::1624ff7c01bb641b91f4518539a0c28a', -- Vrije Universiteit Amsterdam + 'openorgs____::4d4051b56708688235252f1d8fddb8c1', --Iscte - Instituto Universitário de Lisboa + 'openorgs____::ab4ac74c35fa5dada770cf08e5110fab', -- Universidade Católica Portuguesa + 'openorgs____::4d4051b56708688235252f1d8fddb8c1', -- Iscte - Instituto Universitário de Lisboa + 'openorgs____::5d55fb216b14691cf68218daf5d78cd9', -- Munster Technological University + 'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9', -- Cardiff University + 'openorgs____::8839b55dae0c84d56fd533f52d5d483a', -- Leibniz Institute of Ecological Urban and Regional Development + 'openorgs____::526468206bca24c1c90da6a312295cf4', -- Cyprus University of Technology + 'openorgs____::b5ca9d4340e26454e367e2908ef3872f', -- Alma Mater Studiorum University of Bologna + 'openorgs____::a6340e6ecf60f6bba163659df985b0f2' -- TU Dresden + ))) foo; + +--ANALYZE TABLE TARGET.result COMPUTE STATISTICS; \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/workflow.xml b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/workflow.xml new file mode 100644 index 000000000..0542c0c87 --- /dev/null +++ b/dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/workflow.xml @@ -0,0 +1,111 @@ + + + + stats_db_name + the target stats database name + + + monitor_db_name + the target monitor db name + + + monitor_db_shadow_name + the name of the shadow monitor db + + + hive_metastore_uris + hive server metastore URIs + + + hive_jdbc_url + hive server jdbc url + + + hive_timeout + the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds. + + + hadoop_user_name + user name of the wf owner + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + hive.txn.timeout + ${hive_timeout} + + + mapred.job.queue.name + analytics + + + + + + + + ${wf:conf('resumeFrom') eq 'Step1-updateMonitorDB'} + ${wf:conf('resumeFrom') eq 'Step2-copyDataToImpalaCluster'} + ${wf:conf('resumeFrom') eq 'Step3-finalizeImpalaCluster'} + + + + + + Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] + + + + + ${jobTracker} + ${nameNode} + monitor.sh + ${stats_db_name} + ${monitor_db_name} + ${monitor_db_shadow_name} + ${wf:appPath()}/scripts/updateMonitorDB_institutions.sql + ${wf:appPath()}/scripts/updateMonitorDB.sql + ${wf:appPath()}/scripts/updateMonitorDBAll.sql + monitor.sh + + + + + + + + ${jobTracker} + ${nameNode} + copyDataToImpalaCluster.sh + ${monitor_db_name} + ${hadoop_user_name} + copyDataToImpalaCluster.sh + + + + + + + + ${jobTracker} + ${nameNode} + finalizeImpalaCluster.sh + ${monitor_db_name} + ${monitor_db_prod_name} + ${monitor_db_shadow_name} + finalizeImpalaCluster.sh + + + + + + +