ResultType
This commit is contained in:
parent
0b55795d4d
commit
9e4d58f505
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@ -10,6 +10,20 @@ import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.oaiIProvenance;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import org.apache.commons.lang3.StringUtils;
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import org.dom4j.Document;
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import org.dom4j.DocumentFactory;
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import org.dom4j.DocumentHelper;
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import org.dom4j.Node;
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import eu.dnetlib.dhp.oa.graph.raw.common.MigrationConstants;
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import eu.dnetlib.dhp.schema.oaf.Author;
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import eu.dnetlib.dhp.schema.oaf.DataInfo;
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import eu.dnetlib.dhp.schema.oaf.Dataset;
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@ -27,17 +41,6 @@ import eu.dnetlib.dhp.schema.oaf.Relation;
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import eu.dnetlib.dhp.schema.oaf.Result;
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import eu.dnetlib.dhp.schema.oaf.Software;
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import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import org.apache.commons.lang3.StringUtils;
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import org.dom4j.Document;
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import org.dom4j.DocumentFactory;
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import org.dom4j.DocumentHelper;
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import org.dom4j.Node;
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public abstract class AbstractMdRecordToOafMapper {
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@ -46,25 +49,6 @@ public abstract class AbstractMdRecordToOafMapper {
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protected static final Qualifier MAIN_TITLE_QUALIFIER =
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qualifier("main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title");
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protected static final Qualifier PUBLICATION_RESULTTYPE_QUALIFIER =
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qualifier(
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"publication",
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"publication",
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"dnet:result_typologies",
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"dnet:result_typologies");
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protected static final Qualifier DATASET_RESULTTYPE_QUALIFIER =
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qualifier("dataset", "dataset", "dnet:result_typologies", "dnet:result_typologies");
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protected static final Qualifier SOFTWARE_RESULTTYPE_QUALIFIER =
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qualifier("software", "software", "dnet:result_typologies", "dnet:result_typologies");
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protected static final Qualifier OTHER_RESULTTYPE_QUALIFIER =
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qualifier("other", "other", "dnet:result_typologies", "dnet:result_typologies");
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protected static final Qualifier REPOSITORY_QUALIFIER =
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qualifier(
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"sysimport:crosswalk:repository",
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"sysimport:crosswalk:repository",
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"dnet:provenanceActions",
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"dnet:provenanceActions");
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protected AbstractMdRecordToOafMapper(final Map<String, String> code2name) {
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this.code2name = code2name;
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}
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@ -82,22 +66,15 @@ public abstract class AbstractMdRecordToOafMapper {
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DocumentFactory.getInstance().setXPathNamespaceURIs(nsContext);
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final Document doc =
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DocumentHelper.parseText(
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xml.replaceAll(
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"http://datacite.org/schema/kernel-4",
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"http://datacite.org/schema/kernel-3"));
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DocumentHelper.parseText(xml.replaceAll("http://datacite.org/schema/kernel-4", "http://datacite.org/schema/kernel-3"));
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final String type = doc.valueOf("//dr:CobjCategory/@type");
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final KeyValue collectedFrom =
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keyValue(
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createOpenaireId(10, doc.valueOf("//oaf:collectedFrom/@id"), true),
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doc.valueOf("//oaf:collectedFrom/@name"));
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keyValue(createOpenaireId(10, doc.valueOf("//oaf:collectedFrom/@id"), true), doc.valueOf("//oaf:collectedFrom/@name"));
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final KeyValue hostedBy =
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StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id"))
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? collectedFrom
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: keyValue(
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createOpenaireId(10, doc.valueOf("//oaf:hostedBy/@id"), true),
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doc.valueOf("//oaf:hostedBy/@name"));
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: keyValue(createOpenaireId(10, doc.valueOf("//oaf:hostedBy/@id"), true), doc.valueOf("//oaf:hostedBy/@name"));
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final DataInfo info = prepareDataInfo(doc);
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final long lastUpdateTimestamp = new Date().getTime();
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@ -123,14 +100,14 @@ public abstract class AbstractMdRecordToOafMapper {
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case "publication":
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final Publication p = new Publication();
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populateResultFields(p, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
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p.setResulttype(PUBLICATION_RESULTTYPE_QUALIFIER);
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p.setResulttype(MigrationConstants.PUBLICATION_RESULTTYPE_QUALIFIER);
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p.setJournal(prepareJournal(doc, info));
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oafs.add(p);
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break;
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case "dataset":
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final Dataset d = new Dataset();
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populateResultFields(d, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
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d.setResulttype(DATASET_RESULTTYPE_QUALIFIER);
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d.setResulttype(MigrationConstants.DATASET_RESULTTYPE_QUALIFIER);
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d.setStoragedate(prepareDatasetStorageDate(doc, info));
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d.setDevice(prepareDatasetDevice(doc, info));
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d.setSize(prepareDatasetSize(doc, info));
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@ -143,7 +120,7 @@ public abstract class AbstractMdRecordToOafMapper {
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case "software":
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final Software s = new Software();
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populateResultFields(s, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
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s.setResulttype(SOFTWARE_RESULTTYPE_QUALIFIER);
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s.setResulttype(MigrationConstants.SOFTWARE_RESULTTYPE_QUALIFIER);
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s.setDocumentationUrl(prepareSoftwareDocumentationUrls(doc, info));
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s.setLicense(prepareSoftwareLicenses(doc, info));
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s.setCodeRepositoryUrl(prepareSoftwareCodeRepositoryUrl(doc, info));
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@ -154,7 +131,7 @@ public abstract class AbstractMdRecordToOafMapper {
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default:
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final OtherResearchProduct o = new OtherResearchProduct();
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populateResultFields(o, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
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o.setResulttype(OTHER_RESULTTYPE_QUALIFIER);
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o.setResulttype(MigrationConstants.OTHER_RESULTTYPE_QUALIFIER);
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o.setContactperson(prepareOtherResearchProductContactPersons(doc, info));
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o.setContactgroup(prepareOtherResearchProductContactGroups(doc, info));
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o.setTool(prepareOtherResearchProductTools(doc, info));
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@ -227,14 +204,7 @@ public abstract class AbstractMdRecordToOafMapper {
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r.setId(createOpenaireId(50, doc.valueOf("//dri:objIdentifier"), false));
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r.setOriginalId(Arrays.asList(doc.valueOf("//dri:objIdentifier")));
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r.setCollectedfrom(Arrays.asList(collectedFrom));
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r.setPid(
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prepareListStructProps(
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doc,
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"//oaf:identifier",
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"@identifierType",
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"dnet:pid_types",
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"dnet:pid_types",
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info));
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r.setPid(prepareListStructProps(doc, "//oaf:identifier", "@identifierType", "dnet:pid_types", "dnet:pid_types", info));
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r.setDateofcollection(doc.valueOf("//dr:dateOfCollection"));
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r.setDateoftransformation(doc.valueOf("//dr:dateOfTransformation"));
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r.setExtraInfo(new ArrayList<>()); // NOT PRESENT IN MDSTORES
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@ -263,7 +233,10 @@ public abstract class AbstractMdRecordToOafMapper {
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protected abstract Qualifier prepareResourceType(Document doc, DataInfo info);
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protected abstract List<Instance> prepareInstances(
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Document doc, DataInfo info, KeyValue collectedfrom, KeyValue hostedby);
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Document doc,
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DataInfo info,
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KeyValue collectedfrom,
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KeyValue hostedby);
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protected abstract List<Field<String>> prepareSources(Document doc, DataInfo info);
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@ -288,28 +261,34 @@ public abstract class AbstractMdRecordToOafMapper {
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protected abstract List<Author> prepareAuthors(Document doc, DataInfo info);
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protected abstract List<Field<String>> prepareOtherResearchProductTools(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract List<Field<String>> prepareOtherResearchProductContactGroups(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract List<Field<String>> prepareOtherResearchProductContactPersons(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract Qualifier prepareSoftwareProgrammingLanguage(Document doc, DataInfo info);
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protected abstract Field<String> prepareSoftwareCodeRepositoryUrl(Document doc, DataInfo info);
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protected abstract List<StructuredProperty> prepareSoftwareLicenses(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract List<Field<String>> prepareSoftwareDocumentationUrls(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract List<GeoLocation> prepareDatasetGeoLocations(Document doc, DataInfo info);
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protected abstract Field<String> prepareDatasetMetadataVersionNumber(
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Document doc, DataInfo info);
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Document doc,
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DataInfo info);
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protected abstract Field<String> prepareDatasetLastMetadataUpdate(Document doc, DataInfo info);
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@ -333,27 +312,16 @@ public abstract class AbstractMdRecordToOafMapper {
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final String sp = n.valueOf("@sp");
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final String vol = n.valueOf("@vol");
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final String edition = n.valueOf("@edition");
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if (StringUtils.isNotBlank(name)) {
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return journal(
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name,
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issnPrinted,
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issnOnline,
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issnLinking,
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ep,
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iss,
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sp,
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vol,
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edition,
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null,
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null,
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info);
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}
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if (StringUtils.isNotBlank(name)) { return journal(name, issnPrinted, issnOnline, issnLinking, ep, iss, sp, vol, edition, null, null, info); }
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}
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return null;
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}
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protected Qualifier prepareQualifier(
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final Node node, final String xpath, final String schemeId, final String schemeName) {
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final Node node,
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final String xpath,
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final String schemeId,
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final String schemeName) {
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final String classId = node.valueOf(xpath);
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final String className = code2name.get(classId);
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return qualifier(classId, className, schemeId, schemeName);
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@ -371,15 +339,16 @@ public abstract class AbstractMdRecordToOafMapper {
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final Node n = (Node) o;
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final String classId = n.valueOf(xpathClassId);
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final String className = code2name.get(classId);
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res.add(
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structuredProperty(
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n.getText(), classId, className, schemeId, schemeName, info));
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res.add(structuredProperty(n.getText(), classId, className, schemeId, schemeName, info));
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}
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return res;
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}
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protected List<StructuredProperty> prepareListStructProps(
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final Node node, final String xpath, final Qualifier qualifier, final DataInfo info) {
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final Node node,
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final String xpath,
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final Qualifier qualifier,
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final DataInfo info) {
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final List<StructuredProperty> res = new ArrayList<>();
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for (final Object o : node.selectNodes(xpath)) {
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final Node n = (Node) o;
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@ -389,52 +358,37 @@ public abstract class AbstractMdRecordToOafMapper {
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}
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protected List<StructuredProperty> prepareListStructProps(
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final Node node, final String xpath, final DataInfo info) {
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final Node node,
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final String xpath,
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final DataInfo info) {
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final List<StructuredProperty> res = new ArrayList<>();
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for (final Object o : node.selectNodes(xpath)) {
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final Node n = (Node) o;
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res.add(
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structuredProperty(
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n.getText(),
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n.valueOf("@classid"),
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n.valueOf("@classname"),
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n.valueOf("@schemeid"),
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n.valueOf("@schemename"),
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info));
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res.add(structuredProperty(n.getText(), n.valueOf("@classid"), n.valueOf("@classname"), n.valueOf("@schemeid"), n.valueOf("@schemename"), info));
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}
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return res;
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}
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protected OAIProvenance prepareOAIprovenance(final Document doc) {
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final Node n =
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doc.selectSingleNode(
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"//*[local-name()='provenance']/*[local-name()='originDescription']");
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doc.selectSingleNode("//*[local-name()='provenance']/*[local-name()='originDescription']");
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if (n == null) {
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return null;
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}
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if (n == null) { return null; }
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final String identifier = n.valueOf("./*[local-name()='identifier']");
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final String baseURL = n.valueOf("./*[local-name()='baseURL']");
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;
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final String metadataNamespace = n.valueOf("./*[local-name()='metadataNamespace']");
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;
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final String baseURL = n.valueOf("./*[local-name()='baseURL']");;
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final String metadataNamespace = n.valueOf("./*[local-name()='metadataNamespace']");;
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final boolean altered = n.valueOf("@altered").equalsIgnoreCase("true");
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final String datestamp = n.valueOf("./*[local-name()='datestamp']");
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;
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final String harvestDate = n.valueOf("@harvestDate");
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;
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final String datestamp = n.valueOf("./*[local-name()='datestamp']");;
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final String harvestDate = n.valueOf("@harvestDate");;
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return oaiIProvenance(
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identifier, baseURL, metadataNamespace, altered, datestamp, harvestDate);
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return oaiIProvenance(identifier, baseURL, metadataNamespace, altered, datestamp, harvestDate);
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}
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protected DataInfo prepareDataInfo(final Document doc) {
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final Node n = doc.selectSingleNode("//oaf:datainfo");
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if (n == null) {
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return dataInfo(false, null, false, false, REPOSITORY_QUALIFIER, "0.9");
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}
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if (n == null) { return dataInfo(false, null, false, false, MigrationConstants.REPOSITORY_PROVENANCE_ACTIONS, "0.9"); }
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final String paClassId = n.valueOf("./oaf:provenanceaction/@classid");
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final String paClassName = n.valueOf("./oaf:provenanceaction/@classname");
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@ -447,13 +401,7 @@ public abstract class AbstractMdRecordToOafMapper {
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final Boolean inferred = Boolean.parseBoolean(n.valueOf("./oaf:inferred"));
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final String trust = n.valueOf("./oaf:trust");
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return dataInfo(
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deletedbyinference,
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inferenceprovenance,
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inferred,
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false,
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qualifier(paClassId, paClassName, paSchemeId, paSchemeName),
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trust);
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return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, qualifier(paClassId, paClassName, paSchemeId, paSchemeName), trust);
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}
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protected Field<String> prepareField(final Node node, final String xpath, final DataInfo info) {
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@ -461,7 +409,9 @@ public abstract class AbstractMdRecordToOafMapper {
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}
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protected List<Field<String>> prepareListFields(
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final Node node, final String xpath, final DataInfo info) {
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final Node node,
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final String xpath,
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final DataInfo info) {
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return listFields(info, prepareListString(node, xpath));
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}
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@ -10,9 +10,27 @@ import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listKeyValues;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
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import java.io.Closeable;
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import java.io.IOException;
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import java.sql.Array;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.List;
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import java.util.function.Consumer;
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import java.util.function.Function;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
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import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
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import eu.dnetlib.dhp.oa.graph.raw.common.MigrationConstants;
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import eu.dnetlib.dhp.schema.oaf.Context;
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import eu.dnetlib.dhp.schema.oaf.DataInfo;
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import eu.dnetlib.dhp.schema.oaf.Dataset;
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@ -30,32 +48,10 @@ import eu.dnetlib.dhp.schema.oaf.Relation;
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import eu.dnetlib.dhp.schema.oaf.Result;
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import eu.dnetlib.dhp.schema.oaf.Software;
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import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
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import java.io.Closeable;
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import java.io.IOException;
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import java.sql.Array;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Date;
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import java.util.List;
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import java.util.function.Consumer;
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import java.util.function.Function;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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implements Closeable {
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private static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION =
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qualifier(
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"sysimport:crosswalk:entityregistry",
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"sysimport:crosswalk:entityregistry",
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"dnet:provenance_actions",
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"dnet:provenance_actions");
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private static final Log log = LogFactory.getLog(MigrateDbEntitiesApplication.class);
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private final DbClient dbClient;
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@ -65,9 +61,8 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser =
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new ArgumentApplicationParser(
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IOUtils.toString(
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MigrateDbEntitiesApplication.class.getResourceAsStream(
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"/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
IOUtils.toString(MigrateDbEntitiesApplication.class
|
||||
.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
|
||||
parser.parseArgument(args);
|
||||
|
||||
|
|
@ -96,8 +91,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
smdbe.execute("queryOrganizations.sql", smdbe::processOrganization);
|
||||
|
||||
log.info("Processing relations ds <-> orgs ...");
|
||||
smdbe.execute(
|
||||
"queryDatasourceOrganization.sql", smdbe::processDatasourceOrganization);
|
||||
smdbe.execute("queryDatasourceOrganization.sql", smdbe::processDatasourceOrganization);
|
||||
|
||||
log.info("Processing projects <-> orgs ...");
|
||||
smdbe.execute("queryProjectOrganization.sql", smdbe::processProjectOrganization);
|
||||
|
|
@ -123,8 +117,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer)
|
||||
throws Exception {
|
||||
final String sql =
|
||||
IOUtils.toString(
|
||||
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
|
||||
IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
|
||||
|
||||
final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));
|
||||
|
||||
|
|
@ -141,18 +134,14 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
|
||||
ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
|
||||
ds.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
ds.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
ds.setPid(new ArrayList<>());
|
||||
ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
ds.setDateoftransformation(null); // Value not returned by the SQL query
|
||||
ds.setExtraInfo(new ArrayList<>()); // Values not present in the DB
|
||||
ds.setOaiprovenance(null); // Values not present in the DB
|
||||
ds.setDatasourcetype(prepareQualifierSplitting(rs.getString("datasourcetype")));
|
||||
ds.setOpenairecompatibility(
|
||||
prepareQualifierSplitting(rs.getString("openairecompatibility")));
|
||||
ds.setOpenairecompatibility(prepareQualifierSplitting(rs.getString("openairecompatibility")));
|
||||
ds.setOfficialname(field(rs.getString("officialname"), info));
|
||||
ds.setEnglishname(field(rs.getString("englishname"), info));
|
||||
ds.setWebsiteurl(field(rs.getString("websiteurl"), info));
|
||||
|
|
@ -185,11 +174,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
ds.setPidsystems(field(rs.getString("pidsystems"), info));
|
||||
ds.setCertificates(field(rs.getString("certificates"), info));
|
||||
ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
|
||||
ds.setJournal(
|
||||
prepareJournal(
|
||||
rs.getString("officialname"),
|
||||
rs.getString("journal"),
|
||||
info)); // Journal
|
||||
ds.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
|
||||
ds.setDataInfo(info);
|
||||
ds.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
||||
|
|
@ -208,10 +193,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
p.setId(createOpenaireId(40, rs.getString("projectid"), true));
|
||||
p.setOriginalId(Arrays.asList(rs.getString("projectid")));
|
||||
p.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
p.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
p.setPid(new ArrayList<>());
|
||||
p.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -227,8 +209,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
p.setKeywords(field(rs.getString("keywords"), info));
|
||||
p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
|
||||
p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
|
||||
p.setOamandatepublications(
|
||||
field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
p.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
|
||||
p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
|
||||
p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
|
||||
|
|
@ -264,10 +245,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
|
||||
o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
|
||||
o.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
o.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
o.setPid(new ArrayList<>());
|
||||
o.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -281,17 +259,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
o.setEclegalbody(field(Boolean.toString(rs.getBoolean("eclegalbody")), info));
|
||||
o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
|
||||
o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
|
||||
o.setEcresearchorganization(
|
||||
field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
o.setEchighereducation(
|
||||
field(Boolean.toString(rs.getBoolean("echighereducation")), info));
|
||||
o.setEcinternationalorganizationeurinterests(
|
||||
field(
|
||||
Boolean.toString(
|
||||
rs.getBoolean("ecinternationalorganizationeurinterests")),
|
||||
info));
|
||||
o.setEcinternationalorganization(
|
||||
field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
o.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
o.setEchighereducation(field(Boolean.toString(rs.getBoolean("echighereducation")), info));
|
||||
o.setEcinternationalorganizationeurinterests(field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
|
||||
o.setEcinternationalorganization(field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
|
||||
o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
|
||||
o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
|
||||
|
|
@ -311,9 +282,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String orgId = createOpenaireId(20, rs.getString("organization"), true);
|
||||
final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
|
||||
final List<KeyValue> collectedFrom =
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname"));
|
||||
listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("datasourceOrganization");
|
||||
|
|
@ -347,9 +316,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
|
||||
final String projectId = createOpenaireId(40, rs.getString("project"), true);
|
||||
final List<KeyValue> collectedFrom =
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname"));
|
||||
listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("projectOrganization");
|
||||
|
|
@ -380,17 +347,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
public List<Oaf> processClaims(final ResultSet rs) {
|
||||
|
||||
final DataInfo info =
|
||||
dataInfo(
|
||||
false,
|
||||
null,
|
||||
false,
|
||||
false,
|
||||
qualifier(
|
||||
"user:claim",
|
||||
"user:claim",
|
||||
"dnet:provenanceActions",
|
||||
"dnet:provenanceActions"),
|
||||
"0.9");
|
||||
dataInfo(false, null, false, false, qualifier("user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"), "0.9");
|
||||
|
||||
final List<KeyValue> collectedFrom =
|
||||
listKeyValues(createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
|
||||
|
|
@ -402,12 +359,16 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
if (rs.getString("target_type").equals("dataset")) {
|
||||
r = new Dataset();
|
||||
r.setResulttype(MigrationConstants.DATASET_RESULTTYPE_QUALIFIER);
|
||||
} else if (rs.getString("target_type").equals("software")) {
|
||||
r = new Software();
|
||||
r.setResulttype(MigrationConstants.SOFTWARE_RESULTTYPE_QUALIFIER);
|
||||
} else if (rs.getString("target_type").equals("other")) {
|
||||
r = new OtherResearchProduct();
|
||||
r.setResulttype(MigrationConstants.OTHER_RESULTTYPE_QUALIFIER);
|
||||
} else {
|
||||
r = new Publication();
|
||||
r.setResulttype(MigrationConstants.PUBLICATION_RESULTTYPE_QUALIFIER);
|
||||
}
|
||||
r.setId(createOpenaireId(50, rs.getString("target_id"), false));
|
||||
r.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
|
@ -418,11 +379,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
return Arrays.asList(r);
|
||||
} else {
|
||||
final String sourceId =
|
||||
createOpenaireId(
|
||||
rs.getString("source_type"), rs.getString("source_id"), false);
|
||||
createOpenaireId(rs.getString("source_type"), rs.getString("source_id"), false);
|
||||
final String targetId =
|
||||
createOpenaireId(
|
||||
rs.getString("target_type"), rs.getString("target_id"), false);
|
||||
createOpenaireId(rs.getString("target_type"), rs.getString("target_id"), false);
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
final Relation r2 = new Relation();
|
||||
|
|
@ -479,19 +438,11 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String inferenceprovenance = rs.getString("inferenceprovenance");
|
||||
final Boolean inferred = rs.getBoolean("inferred");
|
||||
final String trust = rs.getString("trust");
|
||||
return dataInfo(
|
||||
deletedbyinference,
|
||||
inferenceprovenance,
|
||||
inferred,
|
||||
false,
|
||||
ENTITYREGISTRY_PROVENANCE_ACTION,
|
||||
trust);
|
||||
return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION, trust);
|
||||
}
|
||||
|
||||
private Qualifier prepareQualifierSplitting(final String s) {
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
final String[] arr = s.split("@@@");
|
||||
return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
|
||||
}
|
||||
|
|
@ -507,22 +458,19 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
}
|
||||
|
||||
private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
final String[] parts = s.split("###");
|
||||
if (parts.length == 2) {
|
||||
final String value = parts[0];
|
||||
final String[] arr = parts[1].split("@@@");
|
||||
if (arr.length == 4) {
|
||||
return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo);
|
||||
}
|
||||
if (arr.length == 4) { return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo); }
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private List<StructuredProperty> prepareListOfStructProps(
|
||||
final Array array, final DataInfo dataInfo) throws SQLException {
|
||||
final Array array,
|
||||
final DataInfo dataInfo) throws SQLException {
|
||||
final List<StructuredProperty> res = new ArrayList<>();
|
||||
if (array != null) {
|
||||
for (final String s : (String[]) array.getArray()) {
|
||||
|
|
@ -541,14 +489,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String[] arr = sj.split("@@@");
|
||||
if (arr.length == 3) {
|
||||
final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0] : null;
|
||||
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;
|
||||
;
|
||||
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;
|
||||
;
|
||||
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;;
|
||||
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;;
|
||||
if (issn != null || eissn != null || lissn != null) {
|
||||
return journal(
|
||||
name, issn, eissn, eissn, null, null, null, null, null, null, null,
|
||||
info);
|
||||
return journal(name, issn, eissn, eissn, null, null, null, null, null, null, null, info);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,22 @@
|
|||
package eu.dnetlib.dhp.oa.graph.raw.common;
|
||||
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
|
||||
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
|
||||
public class MigrationConstants {
|
||||
|
||||
public static final Qualifier PUBLICATION_RESULTTYPE_QUALIFIER =
|
||||
qualifier("publication", "publication", "dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier DATASET_RESULTTYPE_QUALIFIER =
|
||||
qualifier("dataset", "dataset", "dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier SOFTWARE_RESULTTYPE_QUALIFIER =
|
||||
qualifier("software", "software", "dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier OTHER_RESULTTYPE_QUALIFIER =
|
||||
qualifier("other", "other", "dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier REPOSITORY_PROVENANCE_ACTIONS =
|
||||
qualifier("sysimport:crosswalk:repository", "sysimport:crosswalk:repository", "dnet:provenanceActions", "dnet:provenanceActions");
|
||||
public static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION =
|
||||
qualifier("sysimport:crosswalk:entityregistry", "sysimport:crosswalk:entityregistry", "dnet:provenanceActions", "dnet:provenanceActions");
|
||||
|
||||
}
|
||||
Loading…
Reference in New Issue