fixed dedup record id prefix, set the correct dataInfo in the DedupRecordFactory

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java

@@ -25,6 +25,7 @@ public class DedupRecordFactory {
 
     public static <T extends OafEntity> Dataset<T> createDedupRecord(
             final SparkSession spark,
+            final DataInfo dataInfo,
             final String mergeRelsInputPath,
             final String entitiesInputPath,
             final Class<T> clazz) {
@@ -67,18 +68,14 @@ public class DedupRecordFactory {
                         Encoders.STRING())
                 .mapGroups(
                         (MapGroupsFunction<String, Tuple2<String, T>, T>)
-                                (key, values) -> entityMerger(key, values, ts, clazz),
+                                (key, values) -> entityMerger(key, values, ts, dataInfo),
                         Encoders.bean(clazz));
     }
 
     private static <T extends OafEntity> T entityMerger(
-            String id, Iterator<Tuple2<String, T>> entities, long ts, Class<T> clazz) {
+            String id, Iterator<Tuple2<String, T>> entities, long ts, DataInfo dataInfo) {
-        try {
+
-            T entity = clazz.newInstance();
+        T entity = entities.next()._2();
-            entity.setId(id);
-            entity.setDataInfo(new DataInfo());
-            entity.getDataInfo().setTrust("0.9");
-            entity.setLastupdatetimestamp(ts);
 
         final Collection<String> dates = Lists.newArrayList();
         entities.forEachRemaining(
@@ -90,7 +87,7 @@ public class DedupRecordFactory {
                         Result er = (Result) entity;
                         er.setAuthor(DedupUtility.mergeAuthor(er.getAuthor(), r1.getAuthor()));
 
-                            if (er.getDateofacceptance() != null) {
+                        if (r1.getDateofacceptance() != null) {
                             dates.add(r1.getDateofacceptance().getValue());
                         }
                     }
@@ -99,9 +96,11 @@ public class DedupRecordFactory {
         if (ModelSupport.isSubClass(entity, Result.class)) {
             ((Result) entity).setDateofacceptance(DatePicker.pick(dates));
         }
+
+        entity.setId(id);
+        entity.setLastupdatetimestamp(ts);
+        entity.setDataInfo(dataInfo);
+
         return entity;
-        } catch (IllegalAccessException | InstantiationException e) {
-            throw new RuntimeException(e);
-        }
     }
 }

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateDedupRecord.java

@@ -3,7 +3,9 @@ package eu.dnetlib.dhp.oa.dedup;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.schema.common.EntityType;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.DataInfo;
 import eu.dnetlib.dhp.schema.oaf.OafEntity;
+import eu.dnetlib.dhp.schema.oaf.Qualifier;
 import eu.dnetlib.dhp.utils.ISLookupClientFactory;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@@ -21,6 +23,10 @@ public class SparkCreateDedupRecord extends AbstractSparkAction {
 
     private static final Logger log = LoggerFactory.getLogger(SparkCreateDedupRecord.class);
 
+    public static final String ROOT_TRUST = "0.8";
+    public static final String PROVENANCE_ACTION_CLASS = "sysimport:dedup";
+    public static final String PROVENANCE_ACTIONS = "dnet:provenanceActions";
+
     public SparkCreateDedupRecord(ArgumentApplicationParser parser, SparkSession spark) {
         super(parser, spark);
     }
@@ -67,13 +73,30 @@ public class SparkCreateDedupRecord extends AbstractSparkAction {
                     DedupUtility.createMergeRelPath(workingPath, actionSetId, subEntity);
             final String entityPath = DedupUtility.createEntityPath(graphBasePath, subEntity);
 
-            Class<OafEntity> clazz = ModelSupport.entityTypes.get(EntityType.valueOf(subEntity));
+            final Class<OafEntity> clazz =
-
+                    ModelSupport.entityTypes.get(EntityType.valueOf(subEntity));
-            DedupRecordFactory.createDedupRecord(spark, mergeRelPath, entityPath, clazz)
+            final DataInfo dataInfo = getDataInfo(dedupConf);
+            DedupRecordFactory.createDedupRecord(spark, dataInfo, mergeRelPath, entityPath, clazz)
                     .write()
                     .mode(SaveMode.Overwrite)
                     .option("compression", "gzip")
                     .json(outputPath);
         }
     }
+
+    private static DataInfo getDataInfo(DedupConfig dedupConf) {
+        DataInfo info = new DataInfo();
+        info.setDeletedbyinference(false);
+        info.setInferred(true);
+        info.setInvisible(false);
+        info.setTrust(ROOT_TRUST);
+        info.setInferenceprovenance(dedupConf.getWf().getConfigurationId());
+        Qualifier provenance = new Qualifier();
+        provenance.setClassid(PROVENANCE_ACTION_CLASS);
+        provenance.setClassname(PROVENANCE_ACTION_CLASS);
+        provenance.setSchemeid(PROVENANCE_ACTIONS);
+        provenance.setSchemename(PROVENANCE_ACTIONS);
+        info.setProvenanceaction(provenance);
+        return info;
+    }
 }

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java

@@ -25,7 +25,7 @@ public class ConnectedComponent implements Serializable {
         if (docIds.size() > 1) {
             final String s = getMin();
             String prefix = s.split("\\|")[0];
-            ccId = prefix + "|dedup_______::" + DedupUtility.md5(s);
+            ccId = prefix + "|dedup_wf_001::" + DedupUtility.md5(s);
             return ccId;
         } else {
             return docIds.iterator().next();

dhp-workflows/dhp-dedup-scholexplorer/src/main/java/eu/dnetlib/dedup/graph/ConnectedComponent.java

@@ -25,7 +25,7 @@ public class ConnectedComponent implements Serializable {
         if (docIds.size() > 1) {
             final String s = getMin();
             String prefix = s.split("\\|")[0];
-            ccId = prefix + "|dedup_______::" + DedupUtility.md5(s);
+            ccId = prefix + "|dedup_wf_001::" + DedupUtility.md5(s);
             return ccId;
         } else {
             return docIds.iterator().next();