bug fix and test implementation
This commit is contained in:
parent
531ec8544b
commit
9b3a9b2381
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@ -54,4 +54,19 @@ class JsonPathTest {
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Assertions.assertTrue(StringUtils.isNotBlank(row.getAs("identifier")));
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}
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@Test
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void testJPath2() throws IOException {
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DedupConfig conf = DedupConfig
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.load(IOUtils.toString(getClass().getResourceAsStream("dedup_conf_dataset.json")));
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final String dat = IOUtils.toString(getClass().getResourceAsStream("dataset_example1.json"));
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Row row = SparkModel.apply(conf).rowFromJson(dat);
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System.out.println("row = " + row);
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Assertions.assertNotNull(row);
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Assertions.assertTrue(StringUtils.isNotBlank(row.getAs("identifier")));
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}
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}
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@ -18,8 +18,10 @@ import org.apache.spark.sql.Row;
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import org.spark_project.guava.hash.Hashing;
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import scala.collection.JavaConverters;
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import scala.collection.convert.Wrappers;
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import scala.collection.mutable.ArrayBuffer;
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import java.io.*;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.stream.Collectors;
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@ -33,17 +35,16 @@ public abstract class DedupLocalTestUtils {
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if(value.getClass() == String.class){
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ret.append("<tr><th>").append(fieldName).append("</th><td>").append(value).append("</td></tr>");
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}
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else {
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List<String> strings = IteratorUtils.toList(JavaConverters.asJavaIteratorConverter(((Wrappers.JListWrapper<String>) value).iterator()).asJava());
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if(value.toString().contains("value")) {
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List<String> values = strings.stream().map(DedupLocalTestUtils::takeValue).collect(Collectors.toList());
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ret.append("<tr><th>").append(fieldName).append("</th><td>[").append(String.join(";", values)).append("]</td></tr>");
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}
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else {
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ret.append("<tr><th>").append(fieldName).append("</th><td>[").append(String.join(";", strings)).append("]</td></tr>");
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}
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else if(value.getClass() == Wrappers.JListWrapper.class) {
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List<String> values = IteratorUtils.toList(JavaConverters.asJavaIteratorConverter(((Wrappers.JListWrapper<String>) value).iterator()).asJava())
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.stream()
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.map(DedupLocalTestUtils::takeValue)
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.collect(Collectors.toList());
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ret.append("<tr><th>").append(fieldName).append("</th><td>[").append(String.join(";", values)).append("]</td></tr>");
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}
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else if(value.getClass() == ArrayBuffer.class){
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List<String> values = new ArrayList<>(IteratorUtils.toList(JavaConverters.asJavaIteratorConverter(((ArrayBuffer<String>) value).iterator()).asJava()));
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ret.append("<tr><th>").append(fieldName).append("</th><td>[").append(String.join(";", values)).append("]</td></tr>");
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}
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}
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@ -122,10 +123,9 @@ public abstract class DedupLocalTestUtils {
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return rootNode.get("value").toString().replaceAll("\"", "");
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} catch (Exception e) {
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return "";
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return json;
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}
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}
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}
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File diff suppressed because one or more lines are too long
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@ -0,0 +1,496 @@
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{
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"wf": {
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"threshold" : "0.99",
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"dedupRun" : "001",
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"entityType" : "result",
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"subEntityType" : "resulttype",
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"subEntityValue" : "dataset",
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"orderField" : "title",
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"queueMaxSize" : "2000",
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"groupMaxSize" : "100",
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"maxChildren" : "100",
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"slidingWindowSize" : "100",
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"rootBuilder" : ["result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
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"includeChildren" : "true",
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"idPath" : "$.id",
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"maxIterations" : 20
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},
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"pace": {
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"clustering": [
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{
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"name": "numAuthorsTitleSuffixPrefixChain",
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"fields": [
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"num_authors", "title"
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],
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"params": {
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"mod": "10"
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}
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},
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{
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"name": "jsonlistclustering",
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"fields": [
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"pid",
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"alternateid"
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],
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"params": {
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"jpath_value": "$.value",
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"jpath_classid": "$.qualifier.classid"
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}
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}
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],
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"decisionTree": {
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"start": {
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"fields": [
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{
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"field": "pid",
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"comparator": "jsonListMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {
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"jpath_value": "$.value",
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"jpath_classid": "$.qualifier.classid",
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"mode": "count"
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}
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}
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],
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"threshold": 1.0,
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"aggregation": "MAX",
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"positive": "MATCH",
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"negative": "pidVSaltid",
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"undefined": "pidVSaltid",
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"ignoreUndefined": "false"
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},
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"pidVSaltid": {
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"fields": [
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{
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"field": "pid",
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"comparator": "jsonListMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {
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"jpath_value": "$.value",
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"jpath_classid": "$.qualifier.classid",
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"crossCompare": "alternateid",
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"mode": "count"
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}
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}
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],
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"threshold": 1.0,
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"aggregation": "MAX",
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"positive": "softCheck",
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"negative": "earlyExits",
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"undefined": "earlyExits",
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"ignoreUndefined": "true"
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},
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"softCheck": {
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"fields": [
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{
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"field": "title",
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"comparator": "levensteinTitle",
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"weight": 1.0,
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"countIfUndefined": "true",
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"params": { "threshold": "0.9" }
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}
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],
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"threshold": 0.9,
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"aggregation": "AVG",
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"positive": "MATCH",
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"negative": "NO_MATCH",
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"undefined": "NO_MATCH",
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"ignoreUndefined": "true"
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},
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"earlyExits": {
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"fields": [
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{
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"field": "title",
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"comparator": "titleVersionMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {}
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},
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{
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"field": "authors",
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"comparator": "sizeMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {}
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}
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],
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"threshold": 1.0,
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"aggregation": "AND",
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"positive": "strongCheck",
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"negative": "NO_MATCH",
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"undefined": "strongCheck",
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"ignoreUndefined": "false"
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},
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"strongCheck": {
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"fields": [
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{
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"field": "title",
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"comparator": "levensteinTitle",
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"weight": 1.0,
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"countIfUndefined": "true",
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"params": {"threshold": "0.95"}
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}
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],
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"threshold": 0.95,
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"aggregation": "AVG",
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"positive": "titleLengthCheck",
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"negative": "NO_MATCH",
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"undefined": "NO_MATCH",
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"ignoreUndefined": "true"
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},
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"titleLengthCheck": {
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"fields": [
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{
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"field": "title",
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"comparator": "maxLengthMatch",
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"weight": 1.0,
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"countIfUndefined": "true",
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"params": {
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"limit": 30
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}
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}
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],
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"threshold": 0.99,
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"aggregation": "MAX",
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"positive": "fullnames_strong",
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"negative": "fullnames_weak",
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"undefined": "NO_MATCH",
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"ignoreUndefined": "true"
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},
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"fullnames_weak": {
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"fields": [
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{
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"field": "authors",
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"comparator": "authorsMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {
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"surname_th": 0.75,
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"fullname_th": 0.75,
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"threshold": 0.6,
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"mode": "full"
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}
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}
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],
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"threshold": 0.6,
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"aggregation": "MAX",
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"positive": "MATCH",
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"negative": "NO_MATCH",
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"undefined": "MATCH",
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"ignoreUndefined": "true"
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},
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"fullnames_strong": {
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"fields": [
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{
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"field": "authors",
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"comparator": "authorsMatch",
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"weight": 1.0,
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"countIfUndefined": "false",
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"params": {
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"surname_th": 0.9,
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"fullname_th": 0.9,
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"threshold": 0.9,
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"mode": "full"
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}
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}
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],
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"threshold": 0.9,
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"aggregation": "MAX",
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"positive": "MATCH",
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"negative": "NO_MATCH",
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"undefined": "MATCH",
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"ignoreUndefined": "true"
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}
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},
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"model": [
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{
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"name": "pid",
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"type": "JSON",
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"path": "$.instance[*].pid[*]",
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"overrideMatch": "true"
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},
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{
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"name": "alternateid",
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"type": "JSON",
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"path": "$.instance[*].alternateIdentifier[*]",
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"overrideMatch": "true"
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},
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{
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"name": "title",
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"type": "StringConcat",
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"path": "$.title[?(@.qualifier.classid == 'main title')].value",
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"length": 250,
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"size": 5,
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"clean": "title"
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},
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{
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"name": "authors",
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"type": "List",
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"path": "$.author[*].fullname",
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"size": 200,
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"filter":
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["", "(:null)", "(:tba)", "(:unap)", "(:unas)", "(:unav)", "(:unkn)", "(:unkn) unknown",
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":none", ":null", ":unas", ":unav", ":unkn",
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"[autor desconocido]", "[s. n.]", "[s.n.]", "[s.n]", "[unknown]",
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"anonymous", "n.n.", "nn", "no name supplied", "none", "none available", "not available not available",
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"null \u0026na;", "null anonymous", "unbekannt", "unknown",
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"ifra-nairobi",
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"atlas of living australia",
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"schweizerischer schulrat",
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"münchner volkshochschule",
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"ieee",
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"universidad de salamanca (españa). claustro universitario",
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"staatsbibliothek",
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"national library of laos",
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"volkshochschule leipzig"
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]
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},
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{
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"name": "num_authors",
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"type": "String",
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"path": "$.author.length()"
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},
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{
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"name": "instance",
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"type": "List",
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"path": "$.instance[*].instancetype.classname"
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}
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],
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"blacklists": {
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"title": [
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"(?i)^Data Management Plan",
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"^Inside Front Cover$",
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"(?i)^Poster presentations$",
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"^THE ASSOCIATION AND THE GENERAL MEDICAL COUNCIL$",
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"^Problems with perinatal pathology\\.?$",
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"(?i)^Cases? of Puerperal Convulsions$",
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"(?i)^Operative Gyna?ecology$",
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"(?i)^Mind the gap\\!?\\:?$",
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"^Chronic fatigue syndrome\\.?$",
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"^Cartas? ao editor Letters? to the Editor$",
|
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"^Note from the Editor$",
|
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"^Anesthesia Abstract$",
|
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"^Annual report$",
|
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"(?i)^“?THE RADICAL PREVENTION OF VENEREAL DISEASE\\.?”?$",
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"(?i)^Graph and Table of Infectious Diseases?$",
|
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"^Presentation$",
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"(?i)^Reviews and Information on Publications$",
|
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"(?i)^PUBLIC HEALTH SERVICES?$",
|
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"(?i)^COMBINED TEXT-?BOOK OF OBSTETRICS AND GYN(Æ|ae)COLOGY$",
|
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"(?i)^Adrese autora$",
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"(?i)^Systematic Part .*\\. Catalogus Fossilium Austriae, Band 2: Echinoidea neogenica$",
|
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"(?i)^Acknowledgement to Referees$",
|
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"(?i)^Behçet's disease\\.?$",
|
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"(?i)^Isolation and identification of restriction endonuclease.*$",
|
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"(?i)^CEREBROVASCULAR DISEASES?.?$",
|
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"(?i)^Screening for abdominal aortic aneurysms?\\.?$",
|
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"^Event management$",
|
||||
"(?i)^Breakfast and Crohn's disease.*\\.?$",
|
||||
"^Cálculo de concentraciones en disoluciones acuosas. Ejercicio interactivo\\..*\\.$",
|
||||
"(?i)^Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of Autism spectrum disorders?\\.?$",
|
||||
"^Gushi hakubutsugaku$",
|
||||
"^Starobosanski nadpisi u Bosni i Hercegovini \\(.*\\)$",
|
||||
"^Intestinal spirocha?etosis$",
|
||||
"^Treatment of Rodent Ulcer$",
|
||||
"(?i)^\\W*Cloud Computing\\W*$",
|
||||
"^Compendio mathematico : en que se contienen todas las materias mas principales de las Ciencias que tratan de la cantidad$",
|
||||
"^Free Communications, Poster Presentations: Session [A-F]$",
|
||||
"^“The Historical Aspects? of Quackery\\.?”$",
|
||||
"^A designated centre for people with disabilities operated by St John of God Community Services (Limited|Ltd), Louth$",
|
||||
"^P(er|re)-Mile Premiums for Auto Insurance\\.?$",
|
||||
"(?i)^Case Report$",
|
||||
"^Boletín Informativo$",
|
||||
"(?i)^Glioblastoma Multiforme$",
|
||||
"(?i)^Nuevos táxones animales descritos en la península Ibérica y Macaronesia desde 1994 \\(.*\\)$",
|
||||
"^Zaměstnanecké výhody$",
|
||||
"(?i)^The Economics of Terrorism and Counter-Terrorism: A Survey \\(Part .*\\)$",
|
||||
"(?i)^Carotid body tumours?\\.?$",
|
||||
"(?i)^\\[Españoles en Francia : La condición Emigrante.*\\]$",
|
||||
"^Avant-propos$",
|
||||
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Head(s)? and Capital(s)?$",
|
||||
"(?i)^St\\. Patrick's Cathedral, Dublin, County Dublin - Bases?$",
|
||||
"(?i)^PUBLIC HEALTH VERSUS THE STATE$",
|
||||
"^Viñetas de Cortázar$",
|
||||
"(?i)^Search for heavy neutrinos and W(\\[|_|\\(|_\\{|-)?R(\\]|\\)|\\})? bosons with right-handed couplings in a left-right symmetric model in pp collisions at.*TeV(\\.)?$",
|
||||
"(?i)^Measurement of the pseudorapidity and centrality dependence of the transverse energy density in Pb(-?)Pb collisions at.*tev(\\.?)$",
|
||||
"(?i)^Search for resonances decaying into top-quark pairs using fully hadronic decays in pp collisions with ATLAS at.*TeV$",
|
||||
"(?i)^Search for neutral minimal supersymmetric standard model Higgs bosons decaying to tau pairs in pp collisions at.*tev$",
|
||||
"(?i)^Relatório de Estágio (de|em) Angiologia e Cirurgia Vascular$",
|
||||
"^Aus der AGMB$",
|
||||
"^Znanstveno-stručni prilozi$",
|
||||
"(?i)^Zhodnocení finanční situace podniku a návrhy na zlepšení$",
|
||||
"(?i)^Evaluation of the Financial Situation in the Firm and Proposals to its Improvement$",
|
||||
"(?i)^Hodnocení finanční situace podniku a návrhy na její zlepšení$",
|
||||
"^Finanční analýza podniku$",
|
||||
"^Financial analysis( of business)?$",
|
||||
"(?i)^Textbook of Gyn(a)?(Æ)?(e)?cology$",
|
||||
"^Jikken nihon shūshinsho$",
|
||||
"(?i)^CORONER('|s)(s|') INQUESTS$",
|
||||
"(?i)^(Μελέτη παραγόντων )?risk management( για ανάπτυξη και εφαρμογή ενός πληροφοριακού συστήματος| και ανάπτυξη συστήματος)?$",
|
||||
"(?i)^Consultants' contract(s)?$",
|
||||
"(?i)^Upute autorima$",
|
||||
"(?i)^Bijdrage tot de Kennis van den Godsdienst der Dajaks van Lan(d|f)ak en Tajan$",
|
||||
"^Joshi shin kokubun$",
|
||||
"^Kōtō shōgaku dokuhon nōson'yō$",
|
||||
"^Jinjō shōgaku shōka$",
|
||||
"^Shōgaku shūjichō$",
|
||||
"^Nihon joshi dokuhon$",
|
||||
"^Joshi shin dokuhon$",
|
||||
"^Chūtō kanbun dokuhon$",
|
||||
"^Wabun dokuhon$",
|
||||
"(?i)^(Analysis of economy selected village or town|Rozbor hospodaření vybrané obce či města)$",
|
||||
"(?i)^cardiac rehabilitation$",
|
||||
"(?i)^Analytical summary$",
|
||||
"^Thesaurus resolutionum Sacrae Congregationis Concilii$",
|
||||
"(?i)^Sumario analítico(\\s{1})?(Analitic summary)?$",
|
||||
"^Prikazi i osvrti$",
|
||||
"^Rodinný dům s provozovnou$",
|
||||
"^Family house with an establishment$",
|
||||
"^Shinsei chūtō shin kokugun$",
|
||||
"^Pulmonary alveolar proteinosis(\\.?)$",
|
||||
"^Shinshū kanbun$",
|
||||
"^Viñeta(s?) de Rodríguez$",
|
||||
"(?i)^RUBRIKA UREDNIKA$",
|
||||
"^A Matching Model of the Academic Publication Market$",
|
||||
"^Yōgaku kōyō$",
|
||||
"^Internetový marketing$",
|
||||
"^Internet marketing$",
|
||||
"^Chūtō kokugo dokuhon$",
|
||||
"^Kokugo dokuhon$",
|
||||
"^Antibiotic Cover for Dental Extraction(s?)$",
|
||||
"^Strategie podniku$",
|
||||
"^Strategy of an Enterprise$",
|
||||
"(?i)^respiratory disease(s?)(\\.?)$",
|
||||
"^Award(s?) for Gallantry in Civil Defence$",
|
||||
"^Podniková kultura$",
|
||||
"^Corporate Culture$",
|
||||
"^Severe hyponatraemia in hospital inpatient(s?)(\\.?)$",
|
||||
"^Pracovní motivace$",
|
||||
"^Work Motivation$",
|
||||
"^Kaitei kōtō jogaku dokuhon$",
|
||||
"^Konsolidovaná účetní závěrka$",
|
||||
"^Consolidated Financial Statements$",
|
||||
"(?i)^intracranial tumour(s?)$",
|
||||
"^Climate Change Mitigation Options and Directed Technical Change: A Decentralized Equilibrium Analysis$",
|
||||
"^\\[CERVECERIAS MAHOU(\\.|\\:) INTERIOR\\] \\[Material gráfico\\]$",
|
||||
"^Housing Market Dynamics(\\:|\\.) On the Contribution of Income Shocks and Credit Constraint(s?)$",
|
||||
"^\\[Funciones auxiliares de la música en Radio París,.*\\]$",
|
||||
"^Úroveň motivačního procesu jako způsobu vedení lidí$",
|
||||
"^The level of motivation process as a leadership$",
|
||||
"^Pay-beds in N(\\.?)H(\\.?)S(\\.?) Hospitals$",
|
||||
"(?i)^news and events$",
|
||||
"(?i)^NOVOSTI I DOGAĐAJI$",
|
||||
"^Sansū no gakushū$",
|
||||
"^Posouzení informačního systému firmy a návrh změn$",
|
||||
"^Information System Assessment and Proposal for ICT Modification$",
|
||||
"^Stresové zatížení pracovníků ve vybrané profesi$",
|
||||
"^Stress load in a specific job$",
|
||||
"^Sunday: Poster Sessions, Pt.*$",
|
||||
"^Monday: Poster Sessions, Pt.*$",
|
||||
"^Wednesday: Poster Sessions, Pt.*",
|
||||
"^Tuesday: Poster Sessions, Pt.*$",
|
||||
"^Analýza reklamy$",
|
||||
"^Analysis of advertising$",
|
||||
"^Shōgaku shūshinsho$",
|
||||
"^Shōgaku sansū$",
|
||||
"^Shintei joshi kokubun$",
|
||||
"^Taishō joshi kokubun dokuhon$",
|
||||
"^Joshi kokubun$",
|
||||
"^Účetní uzávěrka a účetní závěrka v ČR$",
|
||||
"(?i)^The \"?Causes\"? of Cancer$",
|
||||
"^Normas para la publicación de artículos$",
|
||||
"^Editor('|s)(s|') [Rr]eply$",
|
||||
"^Editor(’|s)(s|’) letter$",
|
||||
"^Redaktoriaus žodis$",
|
||||
"^DISCUSSION ON THE PRECEDING PAPER$",
|
||||
"^Kōtō shōgaku shūshinsho jidōyō$",
|
||||
"^Shōgaku nihon rekishi$",
|
||||
"^(Theory of the flow of action currents in isolated myelinated nerve fibers).*$",
|
||||
"^Préface$",
|
||||
"^Occupational [Hh]ealth [Ss]ervices.$",
|
||||
"^In Memoriam Professor Toshiyuki TAKESHIMA$",
|
||||
"^Účetní závěrka ve vybraném podniku.*$",
|
||||
"^Financial statements in selected company$",
|
||||
"^Abdominal [Aa]ortic [Aa]neurysms.*$",
|
||||
"^Pseudomyxoma peritonei$",
|
||||
"^Kazalo autora$",
|
||||
"(?i)^uvodna riječ$",
|
||||
"^Motivace jako způsob vedení lidí$",
|
||||
"^Motivation as a leadership$",
|
||||
"^Polyfunkční dům$",
|
||||
"^Multi\\-funkcional building$",
|
||||
"^Podnikatelský plán$",
|
||||
"(?i)^Podnikatelský záměr$",
|
||||
"(?i)^Business Plan$",
|
||||
"^Oceňování nemovitostí$",
|
||||
"^Marketingová komunikace$",
|
||||
"^Marketing communication$",
|
||||
"^Sumario Analítico$",
|
||||
"^Riječ uredništva$",
|
||||
"^Savjetovanja i priredbe$",
|
||||
"^Índice$",
|
||||
"^(Starobosanski nadpisi).*$",
|
||||
"^Vzdělávání pracovníků v organizaci$",
|
||||
"^Staff training in organization$",
|
||||
"^(Life Histories of North American Geometridae).*$",
|
||||
"^Strategická analýza podniku$",
|
||||
"^Strategic Analysis of an Enterprise$",
|
||||
"^Sadržaj$",
|
||||
"^Upute suradnicima$",
|
||||
"^Rodinný dům$",
|
||||
"(?i)^Fami(l)?ly house$",
|
||||
"^Upute autorima$",
|
||||
"^Strategic Analysis$",
|
||||
"^Finanční analýza vybraného podniku$",
|
||||
"^Finanční analýza$",
|
||||
"^Riječ urednika$",
|
||||
"(?i)^Content(s?)$",
|
||||
"(?i)^Inhalt$",
|
||||
"^Jinjō shōgaku shūshinsho jidōyō$",
|
||||
"(?i)^Index$",
|
||||
"^Chūgaku kokubun kyōkasho$",
|
||||
"^Retrato de una mujer$",
|
||||
"^Retrato de un hombre$",
|
||||
"^Kōtō shōgaku dokuhon$",
|
||||
"^Shotōka kokugo$",
|
||||
"^Shōgaku dokuhon$",
|
||||
"^Jinjō shōgaku kokugo dokuhon$",
|
||||
"^Shinsei kokugo dokuhon$",
|
||||
"^Teikoku dokuhon$",
|
||||
"^Instructions to Authors$",
|
||||
"^KİTAP TAHLİLİ$",
|
||||
"^PRZEGLĄD PIŚMIENNICTWA$",
|
||||
"(?i)^Presentación$",
|
||||
"^İçindekiler$",
|
||||
"(?i)^Tabl?e of contents$",
|
||||
"^(CODICE DEL BEATO DE LOS REYES FERNANDO I Y SANCHA).*$",
|
||||
"^(\\[MADRID\\. BIBL\\. NAC\\. N.*KING FERDINAND I.*FROM SAN ISIDORO DE LEON\\. FACUNDUS SCRIPSIT DATED.*\\]).*",
|
||||
"^Editorial( Board)?$",
|
||||
"(?i)^Editorial \\(English\\)$",
|
||||
"^Editörden$",
|
||||
"^(Corpus Oral Dialectal \\(COD\\)\\.).*$",
|
||||
"^(Kiri Karl Morgensternile).*$",
|
||||
"^(\\[Eksliibris Aleksandr).*\\]$",
|
||||
"^(\\[Eksliibris Aleksandr).*$",
|
||||
"^(Eksliibris Aleksandr).*$",
|
||||
"^(Kiri A\\. de Vignolles).*$",
|
||||
"^(2 kirja Karl Morgensternile).*$",
|
||||
"^(Pirita kloostri idaosa arheoloogilised).*$",
|
||||
"^(Kiri tundmatule).*$",
|
||||
"^(Kiri Jenaer Allgemeine Literaturzeitung toimetusele).*$",
|
||||
"^(Eksliibris Nikolai Birukovile).*$",
|
||||
"^(Eksliibris Nikolai Issakovile).*$",
|
||||
"^(WHP Cruise Summary Information of section).*$",
|
||||
"^(Measurement of the top quark\\-pair production cross section with ATLAS in pp collisions at).*$",
|
||||
"^(Measurement of the spin\\-dependent structure function).*",
|
||||
"(?i)^.*authors['’′]? reply\\.?$",
|
||||
"(?i)^.*authors['’′]? response\\.?$"
|
||||
]
|
||||
},
|
||||
"synonyms" : {}
|
||||
}
|
||||
}
|
Loading…
Reference in New Issue