Changes in indicators step, monitor step
- graduatedoctorates for observatory - result_apc_affiliations table - new indicators indi_is_funder_plan_s indi_funder_fairness indi_ris_fairness indi_funder_openess indi_ris_openess indi_funder_findable indi_ris_findable indi_is_project_result_after - cast year to int in composite indicators - new institutions -- Universidade Católica Portuguesa -- Iscte - Instituto Universitário de Lisboa -- Munster Technological University -- Cardiff University -- Leibniz Institute of Ecological Urban and Regional Development
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2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh
Normal file → Executable file
2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh
Normal file → Executable file
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@ -39,7 +39,7 @@ hdfs dfs -copyToLocal $9
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echo "Creating monitor database"
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cat step20-createMonitorDBAll.sql | sed "s/SOURCE/openaire_prod_stats_20230707/g" | sed "s/TARGET/openaire_prod_stats_monitor_20230707/g1" > foo
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cat step20-createMonitorDBAll.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" > foo
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hive $HIVE_OPTS -f foo
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cat step20-createMonitorDB_funded.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2_funded/g1" > foo
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0
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
Normal file → Executable file
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dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
Normal file → Executable file
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@ -35,6 +35,7 @@ create or replace view ${stats_db_name}.doctoratestudents as select * from stats
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create or replace view ${stats_db_name}.totalresearchers as select * from stats_ext.totalresearchers;
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create or replace view ${stats_db_name}.totalresearchersft as select * from stats_ext.totalresearchersft;
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create or replace view ${stats_db_name}.hrrst as select * from stats_ext.hrrst;
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create or replace view ${stats_db_name}.graduatedoctorates as select * from stats_ext.graduatedoctorates;
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create table if not exists ${stats_db_name}.result_instance stored as parquet as
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select distinct r.*
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@ -12,8 +12,6 @@ from ${stats_db_name}.publication p
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or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp
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on p.id= tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_green_oa COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_grey_lit stored as parquet as
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select distinct p.id, coalesce(grey_lit, 0) as grey_lit
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from ${stats_db_name}.publication p
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@ -25,8 +23,6 @@ from ${stats_db_name}.publication p
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not exists (select 1 from ${stats_db_name}.result_classifications rc where type ='Other literature type'
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and rc.id=p.id)) tmp on p.id=tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_grey_lit COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_doi_from_crossref stored as parquet as
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select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
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from ${stats_db_name}.publication p
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@ -36,8 +32,6 @@ from ${stats_db_name}.publication p
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where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp
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on tmp.id=p.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_doi_from_crossref COMPUTE STATISTICS;
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-- Sprint 2 ----
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create table if not exists ${stats_db_name}.indi_result_has_cc_licence stored as parquet as
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select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
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@ -47,8 +41,6 @@ left outer join (select r.id, license.type as lic from ${stats_db_name}.result r
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where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
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on r.id= tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_result_has_cc_licence COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_result_has_cc_licence_url stored as parquet as
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select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url
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from ${stats_db_name}.result r
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@ -58,22 +50,16 @@ from ${stats_db_name}.result r
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WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp
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on r.id= tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_result_has_cc_licence_url COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_has_abstract stored as parquet as
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select distinct publication.id, cast(coalesce(abstract, true) as int) has_abstract
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from ${stats_db_name}.publication;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_has_abstract COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_result_with_orcid stored as parquet as
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select distinct r.id, coalesce(has_orcid, 0) as has_orcid
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from ${stats_db_name}.result r
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left outer join (select id, 1 as has_orcid from ${stats_db_name}.result_orcid) tmp
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on r.id= tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_result_with_orcid COMPUTE STATISTICS;
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---- Sprint 3 ----
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create table if not exists ${stats_db_name}.indi_funded_result_with_fundref stored as parquet as
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select distinct r.result as id, coalesce(fundref, 0) as fundref
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@ -82,8 +68,6 @@ from ${stats_db_name}.project_results r
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where provenance='Harvested') tmp
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on r.result= tmp.result;
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--ANALYZE TABLE ${stats_db_name}.indi_funded_result_with_fundref COMPUTE STATISTICS;
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-- create table indi_result_org_collab stored as parquet as
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-- select o1.organization org1, o2.organization org2, count(distinct o1.id) as collaborations
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-- from result_organization as o1
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@ -103,8 +87,6 @@ group by o1.organization, o2.organization, o1.name, o2.name;
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drop table ${stats_db_name}.tmp purge;
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--ANALYZE TABLE ${stats_db_name}.indi_result_org_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE ${stats_db_name}.tmp AS
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select distinct ro.organization organization, ro.id, o.name, o.country from ${stats_db_name}.result_organization ro
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join ${stats_db_name}.organization o on o.id=ro.organization where country <> 'UNKNOWN' and o.name is not null;
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@ -117,8 +99,6 @@ group by o1.organization, o1.id, o1.name, o2.country;
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drop table ${stats_db_name}.tmp purge;
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--ANALYZE TABLE ${stats_db_name}.indi_result_org_country_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE ${stats_db_name}.tmp AS
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select o.id organization, o.name, ro.project as project from ${stats_db_name}.organization o
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join ${stats_db_name}.organization_projects ro on o.id=ro.id where o.name is not null;
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@ -132,8 +112,6 @@ group by o1.name,o2.name, o1.organization, o2.organization;
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drop table ${stats_db_name}.tmp purge;
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--ANALYZE TABLE ${stats_db_name}.indi_project_collab_org COMPUTE STATISTICS;
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create TEMPORARY TABLE ${stats_db_name}.tmp AS
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select o.id organization, o.name, o.country , ro.project as project from ${stats_db_name}.organization o
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join ${stats_db_name}.organization_projects ro on o.id=ro.id
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@ -148,8 +126,6 @@ group by o1.organization, o2.country, o1.name;
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drop table ${stats_db_name}.tmp purge;
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--ANALYZE TABLE ${stats_db_name}.indi_project_collab_org_country COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_funder_country_collab stored as parquet as
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with tmp as (select funder, project, country from ${stats_db_name}.organization_projects op
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join ${stats_db_name}.organization o on o.id=op.id
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@ -161,8 +137,6 @@ from tmp as f1
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where f1.country<>f2.country
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group by f1.funder, f2.country, f1.country;
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--ANALYZE TABLE ${stats_db_name}.indi_funder_country_collab COMPUTE STATISTICS;
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create TEMPORARY TABLE ${stats_db_name}.tmp AS
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select distinct country, ro.id as result from ${stats_db_name}.organization o
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join ${stats_db_name}.result_organization ro on o.id=ro.organization
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@ -177,8 +151,6 @@ group by o1.country, o2.country;
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drop table ${stats_db_name}.tmp purge;
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--ANALYZE TABLE ${stats_db_name}.indi_result_country_collab COMPUTE STATISTICS;
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---- Sprint 4 ----
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create table if not exists ${stats_db_name}.indi_pub_diamond stored as parquet as
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select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
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@ -190,8 +162,6 @@ from ${stats_db_name}.publication_datasources pd
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and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp
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on pd.id=tmp.id;
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----ANALYZE TABLE ${stats_db_name}.indi_pub_diamond COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_in_transformative stored as parquet as
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select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
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from ${stats_db_name}.publication pd
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@ -202,8 +172,6 @@ from ${stats_db_name}.publication pd
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and ps.is_transformative_journal=true) tmp
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on pd.id=tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_in_transformative COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_closed_other_open stored as parquet as
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select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from ${stats_db_name}.result_instance ri
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left outer join
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@ -214,14 +182,10 @@ select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_op
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(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp
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on tmp.id=ri.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_closed_other_open COMPUTE STATISTICS;
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---- Sprint 5 ----
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create table if not exists ${stats_db_name}.indi_result_no_of_copies stored as parquet as
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select id, count(id) as number_of_copies from ${stats_db_name}.result_instance group by id;
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--ANALYZE TABLE ${stats_db_name}.indi_result_no_of_copies COMPUTE STATISTICS;
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---- Sprint 6 ----
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create table if not exists ${stats_db_name}.indi_pub_downloads stored as parquet as
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SELECT result_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats
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@ -239,24 +203,18 @@ where downloads>0
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GROUP BY result_id, repository_id
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order by result_id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_downloads_datasource COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_downloads_year stored as parquet as
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SELECT result_id, substring(us.`date`, 1,4) as `year`, sum(downloads) no_downloads
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SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, sum(downloads) no_downloads
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from openaire_prod_usage_stats.usage_stats us
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join ${stats_db_name}.publication on result_id=id where downloads>0
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GROUP BY result_id, substring(us.`date`, 1,4);
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--ANALYZE TABLE ${stats_db_name}.indi_pub_downloads_year COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_downloads_datasource_year stored as parquet as
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SELECT result_id, substring(us.`date`, 1,4) as `year`, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats us
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SELECT result_id, cast(substring(us.`date`, 1,4) as int) as `year`, repository_id, sum(downloads) no_downloads from openaire_prod_usage_stats.usage_stats us
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join ${stats_db_name}.publication on result_id=id
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where downloads>0
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GROUP BY result_id, repository_id, substring(us.`date`, 1,4);
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--ANALYZE TABLE ${stats_db_name}.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
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---- Sprint 7 ----
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create table if not exists ${stats_db_name}.indi_pub_gold_oa stored as parquet as
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WITH gold_oa AS ( SELECT
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@ -307,8 +265,6 @@ FROM
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JOIN gold_oa on issn.issn = gold_oa.issn) tmp
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on pd.id=tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_gold_oa COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_hybrid_oa_with_cc stored as parquet as
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WITH hybrid_oa AS (
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SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn
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@ -340,8 +296,6 @@ FROM ${stats_db_name}.publication_datasources pd
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JOIN ${stats_db_name}.indi_pub_gold_oa ga on pd.id=ga.id
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where cc.has_cc_license=1 and ga.is_gold=0) tmp on pd.id=tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_hybrid stored as parquet as
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WITH gold_oa AS ( SELECT
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issn_l,
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@ -393,8 +347,6 @@ from ${stats_db_name}.publication_datasources pd
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where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp
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on pd.id=tmp.id;
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--ANALYZE TABLE ${stats_db_name}.indi_pub_hybrid COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_org_fairness stored as parquet as
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--return results with PIDs, and rich metadata group by organization
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with result_fair as
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@ -413,8 +365,6 @@ select allresults.organization, result_fair.no_result_fair/allresults.no_allresu
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from allresults
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join result_fair on result_fair.organization=allresults.organization;
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--ANALYZE TABLE ${stats_db_name}.indi_org_fairness COMPUTE STATISTICS;
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CREATE TEMPORARY table ${stats_db_name}.result_fair as
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select ro.organization organization, count(distinct ro.id) no_result_fair
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from ${stats_db_name}.result_organization ro
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@ -439,8 +389,6 @@ from ${stats_db_name}.allresults ar
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DROP table ${stats_db_name}.result_fair purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_fairness_pub_pr COMPUTE STATISTICS;
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CREATE TEMPORARY table ${stats_db_name}.result_fair as
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select year, ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro
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join ${stats_db_name}.result p on p.id=ro.id
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@ -460,8 +408,6 @@ from ${stats_db_name}.allresults
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DROP table ${stats_db_name}.result_fair purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_fairness_pub_year COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.result_fair as
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select ro.organization organization, count(distinct ro.id) no_result_fair
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from ${stats_db_name}.result_organization ro
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@ -484,8 +430,6 @@ on rf.organization=ar.organization;
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DROP table ${stats_db_name}.result_fair purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_fairness_pub COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.result_fair as
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select year, ro.organization organization, count(distinct ro.id) no_result_fair from ${stats_db_name}.result_organization ro
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join ${stats_db_name}.result r on r.id=ro.id
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@ -507,8 +451,6 @@ create table if not exists ${stats_db_name}.indi_org_fairness_year stored as par
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DROP table ${stats_db_name}.result_fair purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_fairness_year COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.result_with_pid as
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select year, ro.organization, count(distinct rp.id) no_result_with_pid from ${stats_db_name}.result_organization ro
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join ${stats_db_name}.result_pids rp on rp.id=ro.id
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@ -530,8 +472,6 @@ from ${stats_db_name}.allresults
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DROP table ${stats_db_name}.result_with_pid purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_findable_year COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.result_with_pid as
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select ro.organization, count(distinct rp.id) no_result_with_pid from ${stats_db_name}.result_organization ro
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join ${stats_db_name}.result_pids rp on rp.id=ro.id
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@ -553,8 +493,6 @@ from ${stats_db_name}.allresults
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DROP table ${stats_db_name}.result_with_pid purge;
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DROP table ${stats_db_name}.allresults purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_findable COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.pubs_oa as
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SELECT ro.organization, count(distinct r.id) no_oapubs FROM ${stats_db_name}.publication r
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join ${stats_db_name}.result_organization ro on ro.id=r.id
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@ -633,8 +571,6 @@ DROP TABLE ${stats_db_name}.allpubsshare purge;
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DROP TABLE ${stats_db_name}.alldatasetssshare purge;
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DROP TABLE ${stats_db_name}.allsoftwaresshare purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_openess COMPUTE STATISTICS;
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CREATE TEMPORARY TABLE ${stats_db_name}.pubs_oa AS
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SELECT r.year, ro.organization, count(distinct r.id) no_oapubs FROM ${stats_db_name}.publication r
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join ${stats_db_name}.result_organization ro on ro.id=r.id
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@ -690,7 +626,7 @@ select allsoftware.year, software_oa.organization, software_oa.no_oasoftware/all
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create table if not exists ${stats_db_name}.indi_org_openess_year stored as parquet as
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select allpubsshare.year, allpubsshare.organization,
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select cast(allpubsshare.year as int), allpubsshare.organization,
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(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
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+(case when d is null then 0 else 1 end))
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org_openess FROM ${stats_db_name}.allpubsshare
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@ -711,8 +647,6 @@ DROP TABLE ${stats_db_name}.allpubsshare purge;
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DROP TABLE ${stats_db_name}.alldatasetssshare purge;
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DROP TABLE ${stats_db_name}.allsoftwaresshare purge;
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--ANALYZE TABLE ${stats_db_name}.indi_org_openess_year COMPUTE STATISTICS;
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create table if not exists ${stats_db_name}.indi_pub_has_preprint stored as parquet as
|
||||
select distinct p.id, coalesce(has_preprint, 0) as has_preprint
|
||||
from ${stats_db_name}.publication_classifications p
|
||||
|
@ -722,8 +656,6 @@ from ${stats_db_name}.publication_classifications p
|
|||
where p.type='Preprint') tmp
|
||||
on p.id= tmp.id;
|
||||
|
||||
--ANALYZE TABLE ${stats_db_name}.indi_pub_has_preprint COMPUTE STATISTICS;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_pub_in_subscribed stored as parquet as
|
||||
select distinct p.id, coalesce(is_subscription, 0) as is_subscription
|
||||
from ${stats_db_name}.publication p
|
||||
|
@ -735,8 +667,6 @@ from ${stats_db_name}.publication p
|
|||
where g.is_gold=0 and h.is_hybrid=0 and t.is_transformative=0) tmp
|
||||
on p.id=tmp.id;
|
||||
|
||||
--ANALYZE TABLE ${stats_db_name}.indi_pub_in_subscribed COMPUTE STATISTICS;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_result_with_pid as
|
||||
select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
|
||||
from ${stats_db_name}.result p
|
||||
|
@ -745,8 +675,6 @@ from ${stats_db_name}.result p
|
|||
from ${stats_db_name}.result_pids p) tmp
|
||||
on p.id= tmp.id;
|
||||
|
||||
--ANALYZE TABLE ${stats_db_name}.indi_result_with_pid COMPUTE STATISTICS;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.pub_fos_totals as
|
||||
select rf.id, count(distinct lvl3) totals from ${stats_db_name}.result_fos rf
|
||||
group by rf.id;
|
||||
|
@ -761,8 +689,6 @@ where totals>1) tmp on p.id=tmp.id;
|
|||
|
||||
drop table ${stats_db_name}.pub_fos_totals purge;
|
||||
|
||||
--ANALYZE TABLE ${stats_db_name}.indi_pub_interdisciplinarity COMPUTE STATISTICS;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_pub_bronze_oa stored as parquet as
|
||||
select distinct p.id, coalesce(is_bronze_oa,0) as is_bronze_oa
|
||||
from ${stats_db_name}.publication p
|
||||
|
@ -772,4 +698,280 @@ join ${stats_db_name}.indi_result_has_cc_licence cc on cc.id=p.id
|
|||
join ${stats_db_name}.indi_pub_gold_oa ga on ga.id=p.id
|
||||
where cc.has_cc_license=0 and ga.is_gold=0) tmp on tmp.id=p.id;
|
||||
|
||||
--ANALYZE TABLE ${stats_db_name}.indi_pub_bronze_oa COMPUTE STATISTICS;
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.project_year_result_year as
|
||||
select p.id project_id, acronym, r.id result_id, r.year, p.end_year
|
||||
from ${stats_db_name}.project p
|
||||
join ${stats_db_name}.result_projects rp on p.id=rp.project
|
||||
join ${stats_db_name}.result r on r.id=rp.id
|
||||
where p.end_year is NOT NULL and r.year is not null;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_is_project_result_after stored as parquet as
|
||||
select pry.project_id, pry.acronym, pry.result_id,
|
||||
coalesce(is_project_result_after, 0) as is_project_result_after
|
||||
from ${stats_db_name}.project_year_result_year pry
|
||||
left outer join (select pry.project_id, pry.acronym, pry.result_id, 1 as is_project_result_after
|
||||
from ${stats_db_name}.project_year_result_year pry
|
||||
where pry.year>pry.end_year) tmp on pry.result_id=tmp.result_id;
|
||||
|
||||
drop table ${stats_db_name}.project_year_result_year purge;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_is_funder_plan_s stored as parquet as
|
||||
select distinct f.id, f.name, coalesce(is_funder_plan_s, 0) as is_funder_plan_s
|
||||
from ${stats_db_name}.funder f
|
||||
left outer join (select id, name, 1 as is_funder_plan_s from ${stats_db_name}.funder
|
||||
join stats_ext.plan_s_short on c_o_alition_s_organisation_funder=name) tmp
|
||||
on f.name= tmp.name;
|
||||
|
||||
--Funder Fairness
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_funder_fairness stored as parquet as
|
||||
with result_fair as
|
||||
(select p.funder funder, count(distinct rp.id) no_result_fair from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.result r on r.id=rp.id
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
where (r.title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003
|
||||
group by p.funder),
|
||||
allresults as (select p.funder funder, count(distinct rp.id) no_allresults from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.result r on r.id=rp.id
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
where cast(year as int)>2003
|
||||
group by p.funder)
|
||||
select allresults.funder, result_fair.no_result_fair/allresults.no_allresults funder_fairness
|
||||
from allresults
|
||||
join result_fair on result_fair.funder=allresults.funder;
|
||||
|
||||
--RIs Fairness
|
||||
create table if not exists ${stats_db_name}.indi_ris_fairness stored as parquet as
|
||||
with result_contexts as
|
||||
(select distinct rc.id, context.name ri_initiative from ${stats_db_name}.result_concepts rc
|
||||
join ${stats_db_name}.concept on concept.id=rc.concept
|
||||
join ${stats_db_name}.category on category.id=concept.category
|
||||
join ${stats_db_name}.context on context.id=category.context),
|
||||
result_fair as
|
||||
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_result_fair from result_contexts rc
|
||||
join ${stats_db_name}.result r on r.id=rc.id
|
||||
where (title is not null) and (publisher is not null) and (abstract=true) and (year is not null) and (authors>0) and cast(year as int)>2003
|
||||
group by rc.ri_initiative),
|
||||
allresults as
|
||||
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_allresults from result_contexts rc
|
||||
join ${stats_db_name}.result r on r.id=rc.id
|
||||
where cast(year as int)>2003
|
||||
group by rc.ri_initiative)
|
||||
select allresults.ri_initiative, result_fair.no_result_fair/allresults.no_allresults ris_fairness
|
||||
from allresults
|
||||
join result_fair on result_fair.ri_initiative=allresults.ri_initiative;
|
||||
|
||||
--Funder Openess
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.pubs_oa as
|
||||
select p.funder funder, count(distinct rp.id) no_oapubs from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.publication r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.datasets_oa as
|
||||
select p.funder funder, count(distinct rp.id) no_oadatasets from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.dataset r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.software_oa as
|
||||
select p.funder funder, count(distinct rp.id) no_oasoftware from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.software r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allpubs as
|
||||
select p.funder funder, count(distinct rp.id) no_allpubs from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.publication r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.alldatasets as
|
||||
select p.funder funder, count(distinct rp.id) no_alldatasets from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.dataset r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allsoftware as
|
||||
select p.funder funder, count(distinct rp.id) no_allsoftware from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.software r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by p.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allpubsshare as
|
||||
select pubs_oa.funder, pubs_oa.no_oapubs/allpubs.no_allpubs p from ${stats_db_name}.allpubs
|
||||
join ${stats_db_name}.pubs_oa on allpubs.funder=pubs_oa.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.alldatasetssshare as
|
||||
select datasets_oa.funder, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
|
||||
from ${stats_db_name}.alldatasets
|
||||
join ${stats_db_name}.datasets_oa on alldatasets.funder=datasets_oa.funder;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allsoftwaresshare as
|
||||
select software_oa.funder, software_oa.no_oasoftware/allsoftware.no_allsoftware s
|
||||
from ${stats_db_name}.allsoftware
|
||||
join ${stats_db_name}.software_oa on allsoftware.funder=software_oa.funder;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_funder_openess stored as parquet as
|
||||
select allpubsshare.funder,
|
||||
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
|
||||
+(case when d is null then 0 else 1 end))
|
||||
funder_openess FROM ${stats_db_name}.allpubsshare
|
||||
left outer join (select funder,d from
|
||||
${stats_db_name}.alldatasetssshare) tmp1
|
||||
on tmp1.funder=allpubsshare.funder
|
||||
left outer join (select funder,s from
|
||||
${stats_db_name}.allsoftwaresshare) tmp2
|
||||
on tmp2.funder=allpubsshare.funder;
|
||||
|
||||
DROP TABLE ${stats_db_name}.pubs_oa purge;
|
||||
DROP TABLE ${stats_db_name}.datasets_oa purge;
|
||||
DROP TABLE ${stats_db_name}.software_oa purge;
|
||||
DROP TABLE ${stats_db_name}.allpubs purge;
|
||||
DROP TABLE ${stats_db_name}.alldatasets purge;
|
||||
DROP TABLE ${stats_db_name}.allsoftware purge;
|
||||
DROP TABLE ${stats_db_name}.allpubsshare purge;
|
||||
DROP TABLE ${stats_db_name}.alldatasetssshare purge;
|
||||
DROP TABLE ${stats_db_name}.allsoftwaresshare purge;
|
||||
|
||||
--RIs Openess
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.result_contexts as
|
||||
select distinct rc.id, context.name ri_initiative from ${stats_db_name}.result_concepts rc
|
||||
join ${stats_db_name}.concept on concept.id=rc.concept
|
||||
join ${stats_db_name}.category on category.id=concept.category
|
||||
join ${stats_db_name}.context on context.id=category.context;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.pubs_oa as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_oapubs from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.publication r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.datasets_oa as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_oadatasets from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.dataset r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.software_oa as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_oasoftware from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.software r on r.id=rp.id
|
||||
join ${stats_db_name}.result_instance ri on ri.id=r.id
|
||||
where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')
|
||||
and cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allpubs as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_allpubs from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.publication r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.alldatasets as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_alldatasets from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.dataset r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allsoftware as
|
||||
select rp.ri_initiative ri_initiative, count(distinct rp.id) no_allsoftware from ${stats_db_name}.result_contexts rp
|
||||
join ${stats_db_name}.software r on r.id=rp.id
|
||||
where cast(r.year as int)>2003
|
||||
group by rp.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allpubsshare as
|
||||
select pubs_oa.ri_initiative, pubs_oa.no_oapubs/allpubs.no_allpubs p from ${stats_db_name}.allpubs
|
||||
join ${stats_db_name}.pubs_oa on allpubs.ri_initiative=pubs_oa.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.alldatasetssshare as
|
||||
select datasets_oa.ri_initiative, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
|
||||
from ${stats_db_name}.alldatasets
|
||||
join ${stats_db_name}.datasets_oa on alldatasets.ri_initiative=datasets_oa.ri_initiative;
|
||||
|
||||
CREATE TEMPORARY TABLE ${stats_db_name}.allsoftwaresshare as
|
||||
select software_oa.ri_initiative, software_oa.no_oasoftware/allsoftware.no_allsoftware s
|
||||
from ${stats_db_name}.allsoftware
|
||||
join ${stats_db_name}.software_oa on allsoftware.ri_initiative=software_oa.ri_initiative;
|
||||
|
||||
create table if not exists ${stats_db_name}.indi_ris_openess stored as parquet as
|
||||
select allpubsshare.ri_initiative,
|
||||
(p+if(isnull(s),0,s)+if(isnull(d),0,d))/(1+(case when s is null then 0 else 1 end)
|
||||
+(case when d is null then 0 else 1 end))
|
||||
ris_openess FROM ${stats_db_name}.allpubsshare
|
||||
left outer join (select ri_initiative,d from
|
||||
${stats_db_name}.alldatasetssshare) tmp1
|
||||
on tmp1.ri_initiative=allpubsshare.ri_initiative
|
||||
left outer join (select ri_initiative,s from
|
||||
${stats_db_name}.allsoftwaresshare) tmp2
|
||||
on tmp2.ri_initiative=allpubsshare.ri_initiative;
|
||||
|
||||
DROP TABLE ${stats_db_name}.result_contexts purge;
|
||||
DROP TABLE ${stats_db_name}.pubs_oa purge;
|
||||
DROP TABLE ${stats_db_name}.datasets_oa purge;
|
||||
DROP TABLE ${stats_db_name}.software_oa purge;
|
||||
DROP TABLE ${stats_db_name}.allpubs purge;
|
||||
DROP TABLE ${stats_db_name}.alldatasets purge;
|
||||
DROP TABLE ${stats_db_name}.allsoftware purge;
|
||||
DROP TABLE ${stats_db_name}.allpubsshare purge;
|
||||
DROP TABLE ${stats_db_name}.alldatasetssshare purge;
|
||||
DROP TABLE ${stats_db_name}.allsoftwaresshare purge;
|
||||
|
||||
--Funder Findability
|
||||
create table if not exists ${stats_db_name}.indi_funder_findable stored as parquet as
|
||||
with result_findable as
|
||||
(select p.funder funder, count(distinct rp.id) no_result_findable from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.publication r on r.id=rp.id
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
join ${stats_db_name}.result_pids rpi on rpi.id=r.id
|
||||
where cast(year as int)>2003
|
||||
group by p.funder),
|
||||
allresults as (select p.funder funder, count(distinct rp.id) no_allresults from ${stats_db_name}.result_projects rp
|
||||
join ${stats_db_name}.result r on r.id=rp.id
|
||||
join ${stats_db_name}.project p on p.id=rp.project
|
||||
where cast(year as int)>2003
|
||||
group by p.funder)
|
||||
select allresults.funder, result_findable.no_result_findable/allresults.no_allresults funder_findable
|
||||
from allresults
|
||||
join result_findable on result_findable.funder=allresults.funder;
|
||||
|
||||
--RIs Findability
|
||||
create table if not exists ${stats_db_name}.indi_ris_findable stored as parquet as
|
||||
with result_contexts as
|
||||
(select distinct rc.id, context.name ri_initiative from ${stats_db_name}.result_concepts rc
|
||||
join ${stats_db_name}.concept on concept.id=rc.concept
|
||||
join ${stats_db_name}.category on category.id=concept.category
|
||||
join ${stats_db_name}.context on context.id=category.context),
|
||||
result_findable as
|
||||
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_result_findable from result_contexts rc
|
||||
join ${stats_db_name}.result r on r.id=rc.id
|
||||
join ${stats_db_name}.result_pids rp on rp.id=r.id
|
||||
where cast(r.year as int)>2003
|
||||
group by rc.ri_initiative),
|
||||
allresults as
|
||||
(select rc.ri_initiative ri_initiative, count(distinct rc.id) no_allresults from result_contexts rc
|
||||
join ${stats_db_name}.result r on r.id=rc.id
|
||||
where cast(r.year as int)>2003
|
||||
group by rc.ri_initiative)
|
||||
select allresults.ri_initiative, result_findable.no_result_findable/allresults.no_allresults ris_findable
|
||||
from allresults
|
||||
join result_findable on result_findable.ri_initiative=allresults.ri_initiative;
|
||||
|
||||
|
|
|
@ -88,6 +88,7 @@ create view if not exists TARGET.doctoratestudents as select * from SOURCE.docto
|
|||
create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
|
||||
create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
|
||||
create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
|
||||
create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
|
||||
|
||||
create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
|
||||
|
@ -270,3 +271,11 @@ create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * f
|
|||
--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
|
||||
create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS;
|
||||
create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
|
||||
create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
|
||||
create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
|
||||
create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
|
||||
create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
|
||||
create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;
|
|
@ -15,6 +15,7 @@ create view if not exists TARGET.doctoratestudents as select * from SOURCE.docto
|
|||
create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
|
||||
create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
|
||||
create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
|
||||
create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
|
||||
|
||||
create table TARGET.result stored as parquet as
|
||||
select distinct * from (
|
||||
|
@ -73,7 +74,11 @@ create table TARGET.result stored as parquet as
|
|||
'openorgs____::c0b262bd6eab819e4c994914f9c010e2', -- National Institute of Geophysics and Volcanology
|
||||
'openorgs____::1624ff7c01bb641b91f4518539a0c28a', -- Vrije Universiteit Amsterdam
|
||||
'openorgs____::4d4051b56708688235252f1d8fddb8c1', --Iscte - Instituto Universitário de Lisboa
|
||||
'openorgs____::ab4ac74c35fa5dada770cf08e5110fab' -- Universidade Católica Portuguesa
|
||||
'openorgs____::ab4ac74c35fa5dada770cf08e5110fab', -- Universidade Católica Portuguesa
|
||||
'openorgs____::4d4051b56708688235252f1d8fddb8c1', -- Iscte - Instituto Universitário de Lisboa
|
||||
'openorgs____::5d55fb216b14691cf68218daf5d78cd9', -- Munster Technological University
|
||||
'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9', -- Cardiff University
|
||||
'openorgs____::8839b55dae0c84d56fd533f52d5d483a' -- Leibniz Institute of Ecological Urban and Regional Development
|
||||
) )) foo;
|
||||
|
||||
--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
|
||||
|
@ -92,6 +97,7 @@ create view if not exists TARGET.doctoratestudents as select * from SOURCE.docto
|
|||
create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
|
||||
create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
|
||||
create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
|
||||
--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
|
||||
|
||||
create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
|
||||
|
@ -274,3 +280,13 @@ create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * f
|
|||
--ANALYZE TABLE TARGET.indi_pub_interdisciplinarity COMPUTE STATISTICS;
|
||||
create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
--ANALYZE TABLE TARGET.result_apc_affiliations COMPUTE STATISTICS;
|
||||
create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
create table TARGET.indi_is_funder_plan_s stored as parquet as select * from SOURCE.indi_is_funder_plan_s orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
|
||||
create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
|
||||
create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
|
||||
create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
|
||||
create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
|
||||
create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;
|
||||
|
||||
|
||||
|
|
|
@ -54,8 +54,11 @@ create table TARGET.result stored as parquet as
|
|||
'openorgs____::c0b262bd6eab819e4c994914f9c010e2', -- National Institute of Geophysics and Volcanology
|
||||
'openorgs____::1624ff7c01bb641b91f4518539a0c28a', -- Vrije Universiteit Amsterdam
|
||||
'openorgs____::4d4051b56708688235252f1d8fddb8c1', --Iscte - Instituto Universitário de Lisboa
|
||||
'openorgs____::ab4ac74c35fa5dada770cf08e5110fab' -- Universidade Católica Portuguesa
|
||||
|
||||
'openorgs____::ab4ac74c35fa5dada770cf08e5110fab', -- Universidade Católica Portuguesa
|
||||
'openorgs____::4d4051b56708688235252f1d8fddb8c1', -- Iscte - Instituto Universitário de Lisboa
|
||||
'openorgs____::5d55fb216b14691cf68218daf5d78cd9', -- Munster Technological University
|
||||
'openorgs____::0fccc7640f0cb44d5cd1b06b312a06b9', -- Cardiff University
|
||||
'openorgs____::8839b55dae0c84d56fd533f52d5d483a' -- Leibniz Institute of Ecological Urban and Regional Development
|
||||
))) foo;
|
||||
|
||||
--ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
|
0
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
Normal file → Executable file
0
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
Normal file → Executable file
|
@ -467,7 +467,7 @@
|
|||
<argument>${usage_stats_db_shadow_name}</argument>
|
||||
<file>finalizeImpalaCluster.sh</file>
|
||||
</shell>
|
||||
<ok to="End"/>
|
||||
<ok to="Step24-updateCache"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
|
|
Loading…
Reference in New Issue