modified the code to allow the dump for a single community (indip from its status)

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java

@@ -17,7 +17,7 @@ public class QueryInformationSystem {
 
 	private ISLookUpService isLookUp;
 
-	private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
+	private static final String XQUERY_ALL = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
 		+
 		"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
 		" and ($x//context/param[./@name = 'status']/text() = 'all') "
@@ -28,9 +28,22 @@ public class QueryInformationSystem {
 		"{$x//CONFIGURATION/context/@label}" +
 		"</community>";
 
-	public CommunityMap getCommunityMap()
+	private static final String XQUERY_CI = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
+			+
+			"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
+			" and  $x//CONFIGURATION/context[./@id=%s]  "
+			+
+			"  return " +
+			"<community> " +
+			"{$x//CONFIGURATION/context/@id}" +
+			"{$x//CONFIGURATION/context/@label}" +
+			"</community>";
+
+	public CommunityMap getCommunityMap(boolean singleCommunity, String community_id)
 		throws ISLookUpException, DocumentException {
-		return getMap(isLookUp.quickSearchProfile(XQUERY));
+		if (singleCommunity)
+			return getMap(isLookUp.quickSearchProfile(XQUERY_CI.replace("%s", "'" + community_id + "'")));
+		return getMap(isLookUp.quickSearchProfile(XQUERY_ALL));
 
 	}
 

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java

@@ -6,6 +6,7 @@ import java.io.IOException;
 import java.io.OutputStreamWriter;
 import java.io.Serializable;
 import java.nio.charset.StandardCharsets;
+import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.hadoop.conf.Configuration;
@@ -71,14 +72,19 @@ public class SaveCommunityMap implements Serializable {
 		final String isLookUpUrl = parser.get("isLookUpUrl");
 		log.info("isLookUpUrl: {}", isLookUpUrl);
 
+		final Boolean singleCommunity = Optional.ofNullable(parser.get("singleDeposition"))
+				.map(Boolean::valueOf).orElse(false);
+
+		final String community_id = Optional.ofNullable(parser.get("communityId")).orElse(null);
+
 		final SaveCommunityMap scm = new SaveCommunityMap(outputPath, nameNode, isLookUpUrl);
 
-		scm.saveCommunityMap();
+		scm.saveCommunityMap(singleCommunity, community_id);
 
 	}
 
-	private void saveCommunityMap() throws ISLookUpException, IOException, DocumentException {
+	private void saveCommunityMap(boolean singleCommunity, String community_id) throws ISLookUpException, IOException, DocumentException {
-		writer.write(Utils.OBJECT_MAPPER.writeValueAsString(queryInformationSystem.getCommunityMap()));
+		writer.write(Utils.OBJECT_MAPPER.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
 		writer.close();
 	}
 }

dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/community/oozie_app/workflow.xml

@@ -134,29 +134,31 @@
             <arg>--outputPath</arg><arg>${workingDir}/communityMap</arg>
             <arg>--nameNode</arg><arg>${nameNode}</arg>
             <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-        </java>
+            <arg>--singleDeposition</arg><arg>${singleDeposition}</arg>
-        <ok to="single_deposition"/>
+            <arg>--communityId></arg><arg>${communityId}</arg>
-        <error to="Kill"/>
-    </action>
-
-    <decision name="single_deposition">
-        <switch>
-            <case to="remove_communities">${wf:conf('singleDeposition') eq true}</case>
-            <default to="fork_dump"/>
-        </switch>
-    </decision>
-
-    <action name="remove_communities">
-        <java>
-            <main-class>eu.dnetlib.dhp.oa.graph.dump.community.RemoveCommunities</main-class>
-            <arg>--path</arg><arg>${workingDir}/communityMap</arg>
-            <arg>--nameNode</arg><arg>${nameNode}</arg>
-            <arg>--communityId</arg><arg>${communityId}</arg>
         </java>
         <ok to="fork_dump"/>
         <error to="Kill"/>
     </action>
 
+<!--    <decision name="single_deposition">-->
+<!--        <switch>-->
+<!--            <case to="remove_communities">${wf:conf('singleDeposition') eq true}</case>-->
+<!--            <default to="fork_dump"/>-->
+<!--        </switch>-->
+<!--    </decision>-->
+
+<!--    <action name="remove_communities">-->
+<!--        <java>-->
+<!--            <main-class>eu.dnetlib.dhp.oa.graph.dump.community.RemoveCommunities</main-class>-->
+<!--            <arg>&#45;&#45;path</arg><arg>${workingDir}/communityMap</arg>-->
+<!--            <arg>&#45;&#45;nameNode</arg><arg>${nameNode}</arg>-->
+<!--            <arg>&#45;&#45;communityId</arg><arg>${communityId}</arg>-->
+<!--        </java>-->
+<!--        <ok to="fork_dump"/>-->
+<!--        <error to="Kill"/>-->
+<!--    </action>-->
+
     <fork name="fork_dump">
         <path start="dump_publication"/>
         <path start="dump_dataset"/>

dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json

@@ -18,6 +18,18 @@
 		"paramLongName": "outputPath",
 		"paramDescription": "the path used to store temporary output files",
 		"paramRequired": true
+	},
+	{
+		"paramName": "sd",
+		"paramLongName": "singleDeposition",
+		"paramDescription": "true if the dump should be created for a single community",
+		"paramRequired": true
+	},
+	{
+		"paramName": "ci",
+		"paramLongName": "communityId",
+		"paramDescription": "the id of the community for which to create the dump",
+		"paramRequired": true
 	}
 ]