bug fix in the DedupRecordFactory, DataInfo set before merge

This commit is contained in:
miconis 2022-02-24 17:08:24 +01:00 committed by Claudio Atzori
parent e7016c3981
commit 8991d097b4
3 changed files with 691 additions and 1 deletions

View File

@ -77,6 +77,7 @@ public class DedupRecordFactory {
throws IllegalAccessException, InstantiationException { throws IllegalAccessException, InstantiationException {
T entity = clazz.newInstance(); T entity = clazz.newInstance();
entity.setDataInfo(dataInfo);
final Collection<String> dates = Lists.newArrayList(); final Collection<String> dates = Lists.newArrayList();
final List<List<Author>> authors = Lists.newArrayList(); final List<List<Author>> authors = Lists.newArrayList();
@ -106,7 +107,7 @@ public class DedupRecordFactory {
entity.setId(id); entity.setId(id);
entity.setLastupdatetimestamp(ts); entity.setLastupdatetimestamp(ts);
entity.setDataInfo(dataInfo); entity.getDataInfo().setDeletedbyinference(false);
return entity; return entity;
} }

View File

@ -0,0 +1,214 @@
{
"wf": {
"threshold" : "0.99",
"dedupRun" : "001",
"entityType" : "result",
"subEntityType" : "resulttype",
"subEntityValue" : "otherresearchproduct",
"orderField" : "title",
"queueMaxSize" : "100",
"groupMaxSize" : "100",
"maxChildren" : "100",
"slidingWindowSize" : "100",
"rootBuilder" : [ "result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
"includeChildren" : "true",
"idPath" : "$.id",
"maxIterations" : 20
},
"pace": {
"clustering": [
{
"name": "wordsStatsSuffixPrefixChain",
"fields": [
"title"
],
"params": {
"mod": "10"
}
},
{
"name": "lowercase",
"fields": [
"doi",
"altdoi"
],
"params": {
"collapseOn:pid": "0"
}
}
],
"decisionTree": {
"start": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"mode": "count"
}
}
],
"threshold": 1.0,
"aggregation": "MAX",
"positive": "MATCH",
"negative": "pidVSaltid",
"undefined": "pidVSaltid",
"ignoreUndefined": "false"
},
"pidVSaltid": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"crossCompare": "alternateid",
"mode": "count"
}
}
],
"threshold": 1.0,
"aggregation": "MAX",
"positive": "softCheck",
"negative": "earlyExits",
"undefined": "earlyExits",
"ignoreUndefined": "true"
},
"softCheck": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"earlyExits": {
"fields": [
{
"field": "title",
"comparator": "titleVersionMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
},
{
"field": "authors",
"comparator": "sizeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1.0,
"aggregation": "AND",
"positive": "strongCheck",
"negative": "NO_MATCH",
"undefined": "strongCheck",
"ignoreUndefined": "false"
},
"strongCheck": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.99,
"aggregation": "AVG",
"positive": "surnames",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"surnames": {
"fields": [
{
"field": "authors",
"comparator": "authorsMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"surname_th": 0.75,
"fullname_th": 0.75,
"mode": "surname"
}
}
],
"threshold": 0.6,
"aggregation": "MAX",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "MATCH",
"ignoreUndefined": "true"
}
},
"model": [
{
"name": "doi",
"type": "String",
"path": "$.instance[*].pid[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "altdoi",
"type": "String",
"path": "$.instance[*].alternateIdentifier[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "pid",
"type": "JSON",
"path": "$.instance[*].pid[*]",
"overrideMatch": "true"
},
{
"name": "alternateid",
"type": "JSON",
"path": "$.instance[*].alternateIdentifier[*]",
"overrideMatch": "true"
},
{
"name": "title",
"type": "String",
"path": "$.title[?(@.qualifier.classid == 'main title')].value",
"length": 250,
"size": 5
},
{
"name": "authors",
"type": "List",
"path": "$.author[*].fullname",
"size": 200
},
{
"name": "resulttype",
"type": "String",
"path": "$.resulttype.classid"
},
{
"name": "instance",
"type": "List",
"path": "$.instance[*].instancetype.classname"
}
],
"blacklists": {},
"synonyms": {}
}
}

View File

@ -0,0 +1,475 @@
{
"wf": {
"threshold": "0.99",
"dedupRun": "001",
"entityType": "result",
"subEntityType": "resulttype",
"subEntityValue": "publication",
"orderField": "title",
"queueMaxSize": "200",
"groupMaxSize": "100",
"maxChildren": "100",
"slidingWindowSize": "50",
"rootBuilder": [
"result",
"resultProject_outcome_isProducedBy",
"resultResult_publicationDataset_isRelatedTo",
"resultResult_similarity_isAmongTopNSimilarDocuments",
"resultResult_similarity_hasAmongTopNSimilarDocuments",
"resultOrganization_affiliation_isAffiliatedWith",
"resultResult_part_hasPart",
"resultResult_part_isPartOf",
"resultResult_supplement_isSupplementTo",
"resultResult_supplement_isSupplementedBy",
"resultResult_version_isVersionOf"
],
"includeChildren": "true",
"maxIterations": 20,
"idPath": "$.id"
},
"pace": {
"clustering": [
{
"name": "wordsStatsSuffixPrefixChain",
"fields": [
"title"
],
"params": {
"mod": "10"
}
},
{
"name": "lowercase",
"fields": [
"doi",
"altdoi"
],
"params": {
"collapseOn:pid": "0"
}
}
],
"decisionTree": {
"start": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"mode": "count"
}
}
],
"threshold": 1.0,
"aggregation": "MAX",
"positive": "MATCH",
"negative": "instanceTypeCheck",
"undefined": "instanceTypeCheck",
"ignoreUndefined": "false"
},
"instanceTypeCheck": {
"fields": [
{
"field": "instance",
"comparator": "instanceTypeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 0.5,
"aggregation": "MAX",
"positive": "pidVSaltid",
"negative": "NO_MATCH",
"undefined": "pidVSaltid",
"ignoreUndefined": "true"
},
"pidVSaltid": {
"fields": [
{
"field": "pid",
"comparator": "jsonListMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"jpath_value": "$.value",
"jpath_classid": "$.qualifier.classid",
"crossCompare": "alternateid",
"mode": "count"
}
}
],
"threshold": 1.0,
"aggregation": "MAX",
"positive": "softCheck",
"negative": "earlyExits",
"undefined": "earlyExits",
"ignoreUndefined": "true"
},
"softCheck": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"earlyExits": {
"fields": [
{
"field": "title",
"comparator": "titleVersionMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
},
{
"field": "authors",
"comparator": "sizeMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1.0,
"aggregation": "AND",
"positive": "strongCheck",
"negative": "NO_MATCH",
"undefined": "strongCheck",
"ignoreUndefined": "false"
},
"strongCheck": {
"fields": [
{
"field": "title",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {}
}
],
"threshold": 0.99,
"aggregation": "AVG",
"positive": "surnames",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
},
"surnames": {
"fields": [
{
"field": "authors",
"comparator": "authorsMatch",
"weight": 1.0,
"countIfUndefined": "false",
"params": {
"surname_th": 0.75,
"fullname_th": 0.75,
"mode": "surname"
}
}
],
"threshold": 0.6,
"aggregation": "MAX",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "MATCH",
"ignoreUndefined": "true"
}
},
"model": [
{
"name": "doi",
"type": "String",
"path": "$.instance[*].pid[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "altdoi",
"type": "String",
"path": "$.instance[*].alternateIdentifier[?(@.qualifier.classid == 'doi')].value"
},
{
"name": "pid",
"type": "JSON",
"path": "$.instance[*].pid[*]",
"overrideMatch": "true"
},
{
"name": "alternateid",
"type": "JSON",
"path": "$.instance[*].alternateIdentifier[*]",
"overrideMatch": "true"
},
{
"name": "title",
"type": "String",
"path": "$.title[?(@.qualifier.classid == 'main title')].value",
"length": 250,
"size": 5
},
{
"name": "authors",
"type": "List",
"path": "$.author[*].fullname",
"size": 200
},
{
"name": "resulttype",
"type": "String",
"path": "$.resulttype.classid"
},
{
"name": "instance",
"type": "List",
"path": "$.instance[*].instancetype.classname"
}
],
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"(?i)^.*authors[']? response\\.?$",
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},
"synonyms": {}
}
}