WIP: using common definitions from ModelConstants
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<configuration>
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<property>
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<name>jobTracker</name>
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<value>yarnRM</value>
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</property>
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<property>
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<name>nameNode</name>
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<value>hdfs://nameservice1</value>
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</property>
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<property>
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<name>oozie.use.system.libpath</name>
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<value>true</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>spark2</value>
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</property>
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<property>
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<name>oozie.launcher.mapreduce.user.classpath.first</name>
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<value>true</value>
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</property>
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</configuration>
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<workflow-app name="Datacite_to_ActionSet_Workflow" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the working path of Datacite stores</description>
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</property>
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<property>
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<name>outputPath</name>
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<description>the path of Datacite ActionSet</description>
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</property>
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</parameters>
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<start to="ExportDataset"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ExportDataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<mode>cluster</mode>
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<name>ExportDataset</name>
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<class>eu.dnetlib.dhp.actionmanager.datacite.ExportActionSetJobNode</class>
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<jar>dhp-aggregation-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--targetPath</arg><arg>${outputPath}</arg>
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<arg>--master</arg><arg>yarn-cluster</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app>
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@ -0,0 +1,35 @@
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package eu.dnetlib.dhp.actionmanager.datacite
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import com.fasterxml.jackson.databind.ObjectMapper
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import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
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import eu.dnetlib.dhp.schema.oaf.Oaf
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import org.junit.jupiter.api.extension.ExtendWith
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import org.junit.jupiter.api.{BeforeEach, Test}
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import org.mockito.junit.jupiter.MockitoExtension
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import scala.io.Source
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@ExtendWith(Array(classOf[MockitoExtension]))
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class DataciteToOAFTest extends AbstractVocabularyTest{
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@BeforeEach
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def setUp() :Unit = {
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println("Called Method")
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super.setUpVocabulary()
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}
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@Test
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def testMapping() :Unit = {
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val record =Source.fromInputStream(getClass.getResourceAsStream("record.json")).mkString
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val mapper = new ObjectMapper()
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val res:List[Oaf] =DataciteToOAFTransformation.generateOAF(record, 0L,0L, vocabularies )
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println (mapper.writeValueAsString(res.head))
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}
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}
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