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parent
375ef07d7b
commit
7fe00cb4fb
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@ -20,15 +20,14 @@ public class QueryInformationSystem {
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private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
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+
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" where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
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" and ($x//context/param[./@name = 'status']/text() = 'manager' or $x//context/param[./@name = 'status']/text() = 'all') " +
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" and ($x//context/param[./@name = 'status']/text() = 'manager' or $x//context/param[./@name = 'status']/text() = 'all') "
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+
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" return " +
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"<community> " +
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"{$x//CONFIGURATION/context/@id}" +
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"{$x//CONFIGURATION/context/@label}" +
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"</community>";
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public CommunityMap getCommunityMap()
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throws ISLookUpException {
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return getMap(isLookUp.quickSearchProfile(XQUERY));
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@ -99,14 +99,15 @@ public class SparkSplitForCommunity implements Serializable {
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private static void printResult(String c, Dataset<Result> result, String outputPath) {
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Dataset<Result> community_products = result
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.filter(r -> containsCommunity(r, c));
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.filter(r -> containsCommunity(r, c));
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if(community_products.count() > 0){
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community_products.repartition(1)
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.write()
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.option("compression", "gzip")
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.mode(SaveMode.Overwrite)
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.json(outputPath + "/" + c);
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if (community_products.count() > 0) {
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community_products
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.repartition(1)
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.write()
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.option("compression", "gzip")
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.mode(SaveMode.Overwrite)
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.json(outputPath + "/" + c);
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}
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}
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@ -362,7 +362,7 @@
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<arg>--outputPath</arg><arg>${outputPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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</spark>
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<ok to="End"/>
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<ok to="send_zenodo"/>
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<error to="Kill"/>
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</action>
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@ -63,8 +63,6 @@ public class DumpJobTest {
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}
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List<String> communityMap = Arrays
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.asList(
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"<community id=\"egi\" label=\"EGI Federation\"/>",
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@ -122,8 +120,6 @@ public class DumpJobTest {
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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@ -146,7 +142,6 @@ public class DumpJobTest {
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"-communityMap", new Gson().toJson(map)
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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@ -186,7 +181,6 @@ public class DumpJobTest {
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Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
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//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
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}
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@ -275,7 +269,6 @@ public class DumpJobTest {
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"-communityMap", new Gson().toJson(map)
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.Result> tmp = sc
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@ -294,7 +287,6 @@ public class DumpJobTest {
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}
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@Test
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public void testRecord() throws Exception {
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final String sourcePath = getClass()
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@ -37,7 +37,6 @@ public class ZenodoUploadTest {
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.toString();
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}
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@Test
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public void HDFSConnection() throws IOException {
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CommunityMap communityMap = new CommunityMap();
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@ -58,7 +57,6 @@ public class ZenodoUploadTest {
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.getPath()),
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new Path(workingDir + "/zenodo/dh-ch/dh-ch"));
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APIClient client = new APIClient(URL_STRING,
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ACCESS_TOKEN);
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client.connect();
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@ -88,7 +86,6 @@ public class ZenodoUploadTest {
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}
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String metadata = "{\"metadata\":{\"access_right\":\"open\",\"communities\":[{\"identifier\":\"openaire-research-graph\"}],\"creators\":[{\"affiliation\":\"CNR - ISTI\",\"name\":\"Manghi, Paolo\",\"orcid\":\"0000-0001-7291-3210\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Atzori, Claudio\",\"orcid\":\"0000-0001-9613-6639\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Bardi, Alessia\",\"orcid\":\"0000-0002-1112-1292\"},{\"affiliation\":\"ISTI - CNR\",\"name\":\"Baglioni, Miriam\",\"orcid\":\"0000-0002-2273-9004\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Shirrwagen, Jochen\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Dimitropoulos, Harry\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"La Bruzzo, Sandro\",\"orcid\":\"0000-0003-2855-1245\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Foufoulas, Ioannis\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Löhden, Aenne\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Bäcker, Amelie\",\"orcid\":\"0000-0001-6015-2063\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Mannocci, Andrea\",\"orcid\":\"0000-0002-5193-7851\"},{\"affiliation\":\"University of Warsaw\",\"name\":\"Horst, Marek\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Czerniak, Andreas\",\"orcid\":\"0000-0003-3883-4169\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kiatropoulou, Katerina\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kokogiannaki, Argiro\",\"orcid\":\"0000-0002-3880-0244\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"De Bonis, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Artini, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Ottonello, Enrico\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Lempesis, Antonis\"},{\"affiliation\":\"CERN\",\"name\":\"Ioannidis, Alexandros\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Summan, Friedrich\"}],\"description\":\"\\u003cp\\u003eThis dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE\\u003c/p\\u003e. \\u003cp\\u003eEach dataset is a zip containing a file with one json per line. Each json is compliant to the schema available at XXXX\\u003c/p\\u003e Note that the file that is offered is not a typical json file: each line contains a separate, self-contained json object. For more information please see http://jsonlines.org\",\"grants\":[{\"id\":\"777541\"},{\"id\":\"824091\"},{\"id\":\"824323\"}],\"keywords\":[\"Open Science\",\"Scholarly Communication\",\"Information Science\"],\"language\":\"eng\",\"license\":\"CC-BY-4.0\",\"title\":\"OpenAIRE Research Graph: Dumps for research communities and initiatives.\",\"upload_type\":\"dataset\",\"version\":\"1.0\"}}";
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System.out.println(client.sendMretadata(metadata));
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@ -97,5 +94,4 @@ public class ZenodoUploadTest {
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}
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}
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