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[AffiliationFromPublisher]refactoring

This commit is contained in:
Miriam Baglioni 2024-08-06 16:27:35 +02:00
parent 675de07138
commit 7df492fa34
1 changed files with 42 additions and 40 deletions
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82
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java
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@ -89,49 +89,51 @@ public class PrepareAffiliationRelations implements Serializable {
isSparkSessionManaged,
spark -> {
Constants.removeOutputDir(spark, outputPath);
List<KeyValue> collectedFromCrossref = OafMapperUtils
.listKeyValues(ModelConstants.CROSSREF_ID, "Crossref");
JavaPairRDD<Text, Text> crossrefRelations = prepareAffiliationRelations(
spark, crossrefInputPath, collectedFromCrossref);
List<KeyValue> collectedFromPubmed = OafMapperUtils
.listKeyValues(ModelConstants.PUBMED_CENTRAL_ID, "Pubmed");
JavaPairRDD<Text, Text> pubmedRelations = prepareAffiliationRelations(
spark, pubmedInputPath, collectedFromPubmed);
List<KeyValue> collectedFromOpenAPC = OafMapperUtils
.listKeyValues(ModelConstants.OPEN_APC_ID, "OpenAPC");
JavaPairRDD<Text, Text> openAPCRelations = prepareAffiliationRelations(
spark, openapcInputPath, collectedFromOpenAPC);
List<KeyValue> collectedFromDatacite = OafMapperUtils
.listKeyValues(ModelConstants.DATACITE_ID, "Datacite");
JavaPairRDD<Text, Text> dataciteRelations = prepareAffiliationRelations(
spark, dataciteInputPath, collectedFromDatacite);
List<KeyValue> collectedFromWebCrawl = OafMapperUtils
.listKeyValues(OPENAIRE_DATASOURCE_ID, OPENAIRE_DATASOURCE_NAME);
JavaPairRDD<Text, Text> webCrawlRelations = prepareAffiliationRelations(
spark, webcrawlInputPath, collectedFromWebCrawl);
List<KeyValue> collectedfromPublisher = OafMapperUtils
.listKeyValues(OPENAIRE_DATASOURCE_ID, OPENAIRE_DATASOURCE_NAME);
JavaPairRDD<Text, Text> publisherRelations = prepareAffiliationRelationFromPublisher(
spark, publisherlInputPath, collectedfromPublisher);
crossrefRelations
.union(pubmedRelations)
.union(openAPCRelations)
.union(dataciteRelations)
.union(webCrawlRelations)
.union(publisherRelations)
.saveAsHadoopFile(
outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, BZip2Codec.class);
createActionSet(spark, crossrefInputPath, pubmedInputPath, openapcInputPath, dataciteInputPath, webcrawlInputPath, publisherlInputPath, outputPath);
});
}
private static void createActionSet(SparkSession spark, String crossrefInputPath, String pubmedInputPath, String openapcInputPath, String dataciteInputPath, String webcrawlInputPath, String publisherlInputPath, String outputPath) {
List<KeyValue> collectedFromCrossref = OafMapperUtils
.listKeyValues(ModelConstants.CROSSREF_ID, "Crossref");
JavaPairRDD<Text, Text> crossrefRelations = prepareAffiliationRelations(
spark, crossrefInputPath, collectedFromCrossref);
List<KeyValue> collectedFromPubmed = OafMapperUtils
.listKeyValues(ModelConstants.PUBMED_CENTRAL_ID, "Pubmed");
JavaPairRDD<Text, Text> pubmedRelations = prepareAffiliationRelations(
spark, pubmedInputPath, collectedFromPubmed);
List<KeyValue> collectedFromOpenAPC = OafMapperUtils
.listKeyValues(ModelConstants.OPEN_APC_ID, "OpenAPC");
JavaPairRDD<Text, Text> openAPCRelations = prepareAffiliationRelations(
spark, openapcInputPath, collectedFromOpenAPC);
List<KeyValue> collectedFromDatacite = OafMapperUtils
.listKeyValues(ModelConstants.DATACITE_ID, "Datacite");
JavaPairRDD<Text, Text> dataciteRelations = prepareAffiliationRelations(
spark, dataciteInputPath, collectedFromDatacite);
List<KeyValue> collectedFromWebCrawl = OafMapperUtils
.listKeyValues(OPENAIRE_DATASOURCE_ID, OPENAIRE_DATASOURCE_NAME);
JavaPairRDD<Text, Text> webCrawlRelations = prepareAffiliationRelations(
spark, webcrawlInputPath, collectedFromWebCrawl);
List<KeyValue> collectedfromPublisher = OafMapperUtils
.listKeyValues(OPENAIRE_DATASOURCE_ID, OPENAIRE_DATASOURCE_NAME);
JavaPairRDD<Text, Text> publisherRelations = prepareAffiliationRelationFromPublisher(
spark, publisherlInputPath, collectedfromPublisher);
crossrefRelations
.union(pubmedRelations)
.union(openAPCRelations)
.union(dataciteRelations)
.union(webCrawlRelations)
.union(publisherRelations)
.saveAsHadoopFile(
outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, BZip2Codec.class);
}
private static JavaPairRDD<Text,Text> prepareAffiliationRelationFromPublisher(SparkSession spark, String inputPath,
List<KeyValue> collectedfrom){
Dataset<Row> df = spark