Merge pull request 'implemented relation to irish funder from a Json list' (#344) from irish_funder into beta
Reviewed-on: #344
This commit is contained in:
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[
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{
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"id": "100007630",
|
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"uri": "http://dx.doi.org/10.13039/100007630",
|
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"name": "College of Engineering and Informatics, National University of Ireland, Galway",
|
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"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100007731",
|
||||
"uri": "http://dx.doi.org/10.13039/100007731",
|
||||
"name": "Endo International",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100008099",
|
||||
"uri": "http://dx.doi.org/10.13039/100008099",
|
||||
"name": "Food Safety Authority of Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100008124",
|
||||
"uri": "http://dx.doi.org/10.13039/100008124",
|
||||
"name": "Department of Jobs, Enterprise and Innovation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100009098",
|
||||
"uri": "http://dx.doi.org/10.13039/100009098",
|
||||
"name": "Department of Foreign Affairs and Trade, Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100009099",
|
||||
"uri": "http://dx.doi.org/10.13039/100009099",
|
||||
"name": "Irish Aid",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100009770",
|
||||
"uri": "http://dx.doi.org/10.13039/100009770",
|
||||
"name": "National University of Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100009985",
|
||||
"uri": "http://dx.doi.org/10.13039/100009985",
|
||||
"name": "Parkinson's Association of Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100010399",
|
||||
"uri": "http://dx.doi.org/10.13039/100010399",
|
||||
"name": "European Society of Cataract and Refractive Surgeons",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100010414",
|
||||
"uri": "http://dx.doi.org/10.13039/100010414",
|
||||
"name": "Health Research Board",
|
||||
"synonym": [
|
||||
"501100001590"
|
||||
]
|
||||
},
|
||||
{
|
||||
"id": "100010546",
|
||||
"uri": "http://dx.doi.org/10.13039/100010546",
|
||||
"name": "Deparment of Children and Youth Affairs, Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100010993",
|
||||
"uri": "http://dx.doi.org/10.13039/100010993",
|
||||
"name": "Irish Nephrology Society",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100011062",
|
||||
"uri": "http://dx.doi.org/10.13039/100011062",
|
||||
"name": "Asian Spinal Cord Network",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100011096",
|
||||
"uri": "http://dx.doi.org/10.13039/100011096",
|
||||
"name": "Jazz Pharmaceuticals",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100011396",
|
||||
"uri": "http://dx.doi.org/10.13039/100011396",
|
||||
"name": "Irish College of General Practitioners",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012734",
|
||||
"uri": "http://dx.doi.org/10.13039/100012734",
|
||||
"name": "Department for Culture, Heritage and the Gaeltacht, Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012754",
|
||||
"uri": "http://dx.doi.org/10.13039/100012754",
|
||||
"name": "Horizon Pharma",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012891",
|
||||
"uri": "http://dx.doi.org/10.13039/100012891",
|
||||
"name": "Medical Research Charities Group",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012919",
|
||||
"uri": "http://dx.doi.org/10.13039/100012919",
|
||||
"name": "Epilepsy Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012920",
|
||||
"uri": "http://dx.doi.org/10.13039/100012920",
|
||||
"name": "GLEN",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100012921",
|
||||
"uri": "http://dx.doi.org/10.13039/100012921",
|
||||
"name": "Royal College of Surgeons in Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013029",
|
||||
"uri": "http://dx.doi.org/10.13039/100013029",
|
||||
"name": "Iris O'Brien Foundation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013206",
|
||||
"uri": "http://dx.doi.org/10.13039/100013206",
|
||||
"name": "Food Institutional Research Measure",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013381",
|
||||
"uri": "http://dx.doi.org/10.13039/100013381",
|
||||
"name": "Irish Phytochemical Food Network",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013433",
|
||||
"uri": "http://dx.doi.org/10.13039/100013433",
|
||||
"name": "Transport Infrastructure Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013461",
|
||||
"uri": "http://dx.doi.org/10.13039/100013461",
|
||||
"name": "Arts and Disability Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013548",
|
||||
"uri": "http://dx.doi.org/10.13039/100013548",
|
||||
"name": "Filmbase",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100013917",
|
||||
"uri": "http://dx.doi.org/10.13039/100013917",
|
||||
"name": "Society for Musicology in Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100014251",
|
||||
"uri": "http://dx.doi.org/10.13039/100014251",
|
||||
"name": "Humanities in the European Research Area",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100014364",
|
||||
"uri": "http://dx.doi.org/10.13039/100014364",
|
||||
"name": "National Children's Research Centre",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100014384",
|
||||
"uri": "http://dx.doi.org/10.13039/100014384",
|
||||
"name": "Amarin Corporation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100014902",
|
||||
"uri": "http://dx.doi.org/10.13039/100014902",
|
||||
"name": "Irish Association for Cancer Research",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015023",
|
||||
"uri": "http://dx.doi.org/10.13039/100015023",
|
||||
"name": "Ireland Funds",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015037",
|
||||
"uri": "http://dx.doi.org/10.13039/100015037",
|
||||
"name": "Simon Cumbers Media Fund",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015319",
|
||||
"uri": "http://dx.doi.org/10.13039/100015319",
|
||||
"name": "Sport Ireland Institute",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015320",
|
||||
"uri": "http://dx.doi.org/10.13039/100015320",
|
||||
"name": "Paralympics Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015442",
|
||||
"uri": "http://dx.doi.org/10.13039/100015442",
|
||||
"name": "Global Brain Health Institute",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015776",
|
||||
"uri": "http://dx.doi.org/10.13039/100015776",
|
||||
"name": "Health and Social Care Board",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100015992",
|
||||
"uri": "http://dx.doi.org/10.13039/100015992",
|
||||
"name": "St. Luke's Institute of Cancer Research",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100017897",
|
||||
"uri": "http://dx.doi.org/10.13039/100017897",
|
||||
"name": "Friedreich\u2019s Ataxia Research Alliance Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018064",
|
||||
"uri": "http://dx.doi.org/10.13039/100018064",
|
||||
"name": "Department of Tourism, Culture, Arts, Gaeltacht, Sport and Media",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018172",
|
||||
"uri": "http://dx.doi.org/10.13039/100018172",
|
||||
"name": "Department of the Environment, Climate and Communications",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018175",
|
||||
"uri": "http://dx.doi.org/10.13039/100018175",
|
||||
"name": "Dairy Processing Technology Centre",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018270",
|
||||
"uri": "http://dx.doi.org/10.13039/100018270",
|
||||
"name": "Health Service Executive",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018529",
|
||||
"uri": "http://dx.doi.org/10.13039/100018529",
|
||||
"name": "Alkermes",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018542",
|
||||
"uri": "http://dx.doi.org/10.13039/100018542",
|
||||
"name": "Irish Endocrine Society",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018754",
|
||||
"uri": "http://dx.doi.org/10.13039/100018754",
|
||||
"name": "An Roinn Sl\u00e1inte",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100018998",
|
||||
"uri": "http://dx.doi.org/10.13039/100018998",
|
||||
"name": "Irish Research eLibrary",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100019428",
|
||||
"uri": "http://dx.doi.org/10.13039/100019428",
|
||||
"name": "Nabriva Therapeutics",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100019637",
|
||||
"uri": "http://dx.doi.org/10.13039/100019637",
|
||||
"name": "Horizon Therapeutics",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100020174",
|
||||
"uri": "http://dx.doi.org/10.13039/100020174",
|
||||
"name": "Health Research Charities Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100020202",
|
||||
"uri": "http://dx.doi.org/10.13039/100020202",
|
||||
"name": "UCD Foundation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100020233",
|
||||
"uri": "http://dx.doi.org/10.13039/100020233",
|
||||
"name": "Ireland Canada University Foundation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "100022943",
|
||||
"uri": "http://dx.doi.org/10.13039/100022943",
|
||||
"name": "National Cancer Registry Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001581",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001581",
|
||||
"name": "Arts Council of Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001582",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001582",
|
||||
"name": "Centre for Ageing Research and Development in Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001583",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001583",
|
||||
"name": "Cystinosis Foundation Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001584",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001584",
|
||||
"name": "Department of Agriculture, Food and the Marine, Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001586",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001586",
|
||||
"name": "Department of Education and Skills, Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001587",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001587",
|
||||
"name": "Economic and Social Research Institute",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001588",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001588",
|
||||
"name": "Enterprise Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001589",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001589",
|
||||
"name": "Environmental Protection Agency",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001591",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001591",
|
||||
"name": "Heritage Council",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001592",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001592",
|
||||
"name": "Higher Education Authority",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001593",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001593",
|
||||
"name": "Irish Cancer Society",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001594",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001594",
|
||||
"name": "Irish Heart Foundation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001595",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001595",
|
||||
"name": "Irish Hospice Foundation",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001596",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001596",
|
||||
"name": "Irish Research Council for Science, Engineering and Technology",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001597",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001597",
|
||||
"name": "Irish Research Council for the Humanities and Social Sciences",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001598",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001598",
|
||||
"name": "Mental Health Commission",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001600",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001600",
|
||||
"name": "Research and Education Foundation, Sligo General Hospital",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001601",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001601",
|
||||
"name": "Royal Irish Academy",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001602",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001602",
|
||||
"name": "Science Foundation Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001603",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001603",
|
||||
"name": "Sustainable Energy Authority of Ireland",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001604",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001604",
|
||||
"name": "Teagasc",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001627",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001627",
|
||||
"name": "Marine Institute",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001628",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001628",
|
||||
"name": "Central Remedial Clinic",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001629",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001629",
|
||||
"name": "Royal Dublin Society",
|
||||
"synonym": []
|
||||
},
|
||||
{
|
||||
"id": "501100001630",
|
||||
"uri": "http://dx.doi.org/10.13039/501100001630",
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|
|
@ -16,6 +16,7 @@ import org.slf4j.{Logger, LoggerFactory}
|
|||
import java.util
|
||||
import scala.collection.JavaConverters._
|
||||
import scala.collection.mutable
|
||||
import scala.io.Source
|
||||
import scala.util.matching.Regex
|
||||
|
||||
case class CrossrefDT(doi: String, json: String, timestamp: Long) {}
|
||||
|
|
@ -30,11 +31,22 @@ case class mappingAuthor(
|
|||
affiliation: Option[mappingAffiliation]
|
||||
) {}
|
||||
|
||||
case class funderInfo(id:String,uri:String, name:String,synonym:List[String] ) {}
|
||||
|
||||
|
||||
|
||||
case class mappingFunder(name: String, DOI: Option[String], award: Option[List[String]]) {}
|
||||
|
||||
case object Crossref2Oaf {
|
||||
val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass)
|
||||
|
||||
val irishFunder: List[funderInfo] = {
|
||||
val s = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/crossref/irish_funder.json")).mkString
|
||||
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
|
||||
lazy val json: org.json4s.JValue = parse(s)
|
||||
json.extract[List[funderInfo]]
|
||||
}
|
||||
|
||||
val mappingCrossrefType = Map(
|
||||
"book-section" -> "publication",
|
||||
"book" -> "publication",
|
||||
|
|
@ -88,6 +100,11 @@ case object Crossref2Oaf {
|
|||
"report" -> "0017 Report"
|
||||
)
|
||||
|
||||
def getIrishId(doi:String):Option[String] = {
|
||||
val id =doi.split("/").last
|
||||
irishFunder.find(f => id.equalsIgnoreCase(f.id) || (f.synonym.nonEmpty && f.synonym.exists(s => s.equalsIgnoreCase(id)))).map(f => f.id)
|
||||
}
|
||||
|
||||
def mappingResult(result: Result, json: JValue, cobjCategory: String): Result = {
|
||||
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
|
||||
|
||||
|
|
@ -467,6 +484,14 @@ case object Crossref2Oaf {
|
|||
if (funders != null)
|
||||
funders.foreach(funder => {
|
||||
if (funder.DOI.isDefined && funder.DOI.get.nonEmpty) {
|
||||
|
||||
if (getIrishId(funder.DOI.get).isDefined) {
|
||||
val nsPrefix = getIrishId(funder.DOI.get).get.padTo(12, '_')
|
||||
val targetId = getProjectId(nsPrefix, "1e5e62235d094afd01cd56e65112fc63")
|
||||
queue += generateRelation(sourceId, targetId, ModelConstants.IS_PRODUCED_BY)
|
||||
queue += generateRelation(targetId, sourceId, ModelConstants.PRODUCES)
|
||||
}
|
||||
|
||||
funder.DOI.get match {
|
||||
case "10.13039/100010663" | "10.13039/100010661" | "10.13039/501100007601" | "10.13039/501100000780" |
|
||||
"10.13039/100010665" =>
|
||||
|
|
|
|||
|
|
@ -50,7 +50,7 @@ class CrossrefMappingTest {
|
|||
}
|
||||
}
|
||||
|
||||
def checkRelation(generatedOAF: List[Oaf]): Unit = {
|
||||
def checkRelation(generatedOAF: List[Oaf]): Unit = {
|
||||
|
||||
val rels: List[Relation] =
|
||||
generatedOAF.filter(p => p.isInstanceOf[Relation]).asInstanceOf[List[Relation]]
|
||||
|
|
|
|||
Loading…
Reference in New Issue