fixed error on empty intersection with publication and relation on export to OAF
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eec418cd26
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734934e2eb
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@ -1,4 +1,6 @@
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package eu.dnetlib.dhp.oa.merge;
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package eu.dnetlib.dhp.oa.merge;
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import java.text.Normalizer;
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import java.text.Normalizer;
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import java.util.*;
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import java.util.*;
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import java.util.stream.Collectors;
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import java.util.stream.Collectors;
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@ -1,12 +1,10 @@
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package eu.dnetlib.dhp.oa.dedup;
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package eu.dnetlib.dhp.oa.dedup;
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import java.util.Collection;
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import java.util.Collection;
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import java.util.Iterator;
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import java.util.Iterator;
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import java.util.List;
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import java.util.List;
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import eu.dnetlib.dhp.oa.merge.AuthorMerger;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.api.java.function.MapGroupsFunction;
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import org.apache.spark.api.java.function.MapGroupsFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Dataset;
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@ -19,6 +17,7 @@ import com.fasterxml.jackson.databind.DeserializationFeature;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Lists;
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import eu.dnetlib.dhp.oa.merge.AuthorMerger;
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import eu.dnetlib.dhp.schema.common.ModelSupport;
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import eu.dnetlib.dhp.schema.common.ModelSupport;
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import eu.dnetlib.dhp.schema.oaf.*;
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import eu.dnetlib.dhp.schema.oaf.*;
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import scala.Tuple2;
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import scala.Tuple2;
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@ -10,11 +10,11 @@ import java.io.Serializable;
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import java.nio.file.Paths;
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import java.nio.file.Paths;
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import java.util.*;
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import java.util.*;
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import eu.dnetlib.dhp.oa.merge.AuthorMerger;
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import org.codehaus.jackson.map.ObjectMapper;
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import org.codehaus.jackson.map.ObjectMapper;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.Test;
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import eu.dnetlib.dhp.oa.merge.AuthorMerger;
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import eu.dnetlib.dhp.schema.oaf.*;
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import eu.dnetlib.dhp.schema.oaf.*;
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import eu.dnetlib.pace.util.MapDocumentUtil;
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import eu.dnetlib.pace.util.MapDocumentUtil;
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import scala.Tuple2;
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import scala.Tuple2;
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@ -272,30 +272,11 @@ object DLIToOAF {
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result
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result
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}
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}
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def convertDLIRelation(r: Relation): Relation = {
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// def convertDLIRelation(r: DLIRelation): Relation = {
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r.setSource(r.getSource.replaceFirst("50|","50|scholix_____::" ).replaceFirst("60|", "60|scholix_____::"))
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//
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r.setTarget(r.getTarget.replaceFirst("50|","50|scholix_____::" ).replaceFirst("60|", "60|scholix_____::"))
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// val result = new Relation
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r
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// if (!relationTypeMapping.contains(r.getRelType))
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}
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// return null
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//
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// if (r.getProperties == null || r.getProperties.size() == 0 || (r.getProperties.size() == 1 && r.getProperties.get(0) == null))
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// return null
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// val t = relationTypeMapping.get(r.getRelType)
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//
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// result.setRelType("resultResult")
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// result.setRelClass(t.get._1)
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// result.setSubRelType(t.get._2)
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// result.setCollectedfrom(r.getProperties.asScala.map(c => collectedFromMap.getOrElse(c.getKey, null)).filter(p => p != null).asJava)
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// result.setSource(generateId(r.getSource))
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// result.setTarget(generateId(r.getTarget))
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//
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// if (result.getSource.equals(result.getTarget))
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// return null
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// result.setDataInfo(generateDataInfo())
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//
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// result
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// }
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def convertDLIDatasetTOOAF(d: DLIDataset): Dataset = {
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def convertDLIDatasetTOOAF(d: DLIDataset): Dataset = {
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@ -44,7 +44,7 @@ object SparkExportContentForOpenAire {
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val dsRel = spark.read.load(s"$workingPath/relation_b").as[Relation]
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val dsRel = spark.read.load(s"$workingPath/relation_b").as[Relation]
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dsRel.filter(r => r.getDataInfo==null || r.getDataInfo.getDeletedbyinference ==false).write.mode(SaveMode.Overwrite).save(s"$workingPath/export/relationDS")
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dsRel.filter(r => r.getDataInfo==null || r.getDataInfo.getDeletedbyinference ==false).map(DLIToOAF.convertDLIRelation).write.mode(SaveMode.Overwrite).save(s"$workingPath/export/relationDS")
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val dsPubs = spark.read.load(s"$workingPath/publication").as[DLIPublication]
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val dsPubs = spark.read.load(s"$workingPath/publication").as[DLIPublication]
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