D-Net
/
dnet-hadoop
14
5
Fork 11
Code Issues 14 Pull Requests 12 Projects 2 Releases 2 Wiki Activity

code formatting

This commit is contained in:
Claudio Atzori 2024-09-30 15:13:23 +02:00
parent 3854fcc5e0
commit 6e0b6a886f
7 changed files with 135 additions and 125 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/MergeEntitiesComparator.java
View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.util.*;

4
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelations.java
View File

@ -130,7 +130,8 @@ public class PrepareAffiliationRelations implements Serializable {
outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, BZip2Codec.class);
}
private static JavaPairRDD<Text, Text> prepareAffiliationRelationFromPublisherNewModel(SparkSession spark, String inputPath,
private static JavaPairRDD<Text, Text> prepareAffiliationRelationFromPublisherNewModel(SparkSession spark,
String inputPath,
List<KeyValue> collectedfrom) {
Dataset<Row> df = spark
@ -153,7 +154,6 @@ public class PrepareAffiliationRelations implements Serializable {
.json(inputPath)
.where("DOI is not null");
return getTextTextJavaPairRDD(collectedfrom, df.selectExpr("DOI", "Organizations as Matchings"));
}

9
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectorWorker.java
View File

@ -69,9 +69,12 @@ public class CollectorWorker extends ReportingJob {
scheduleReport(counter);
try (SequenceFile.Writer writer = SequenceFile
.createWriter(this.fileSystem.getConf(), SequenceFile.Writer.file(new Path(outputPath)), SequenceFile.Writer
.keyClass(IntWritable.class), SequenceFile.Writer
.valueClass(Text.class), SequenceFile.Writer.compression(SequenceFile.CompressionType.BLOCK, new DeflateCodec()))) {
.createWriter(
this.fileSystem.getConf(), SequenceFile.Writer.file(new Path(outputPath)), SequenceFile.Writer
.keyClass(IntWritable.class),
SequenceFile.Writer
.valueClass(Text.class),
SequenceFile.Writer.compression(SequenceFile.CompressionType.BLOCK, new DeflateCodec()))) {
final IntWritable key = new IntWritable(counter.get());
final Text value = new Text();
plugin

4
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/osf/OsfPreprintsCollectorPlugin.java
View File

@ -36,7 +36,9 @@ public class OsfPreprintsCollectorPlugin implements CollectorPlugin {
.map(s -> NumberUtils.toInt(s, PAGE_SIZE_VALUE_DEFAULT))
.orElse(PAGE_SIZE_VALUE_DEFAULT);
if (StringUtils.isBlank(baseUrl)) { throw new CollectorException("Param 'baseUrl' is null or empty"); }
if (StringUtils.isBlank(baseUrl)) {
throw new CollectorException("Param 'baseUrl' is null or empty");
}
final OsfPreprintsIterator it = new OsfPreprintsIterator(baseUrl, pageSize, getClientParams());

11
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/osf/OsfPreprintsIterator.java
View File

@ -54,7 +54,8 @@ public class OsfPreprintsIterator implements Iterator<String> {
@Override
public boolean hasNext() {
synchronized (this.recordQueue) {
while (this.recordQueue.isEmpty() && StringUtils.isNotBlank(this.currentUrl) && this.currentUrl.startsWith("http")) {
while (this.recordQueue.isEmpty() && StringUtils.isNotBlank(this.currentUrl)
&& this.currentUrl.startsWith("http")) {
try {
this.currentUrl = downloadPage(this.currentUrl);
} catch (final CollectorException e) {
@ -63,7 +64,9 @@ public class OsfPreprintsIterator implements Iterator<String> {
}
}
if (!this.recordQueue.isEmpty()) { return true; }
if (!this.recordQueue.isEmpty()) {
return true;
}
return false;
}
@ -112,7 +115,9 @@ public class OsfPreprintsIterator implements Iterator<String> {
}
private Document downloadUrl(final String url, final int attempt) throws CollectorException {
if (attempt > MAX_ATTEMPTS) { throw new CollectorException("Max Number of attempts reached, url:" + url); }
if (attempt > MAX_ATTEMPTS) {
throw new CollectorException("Max Number of attempts reached, url:" + url);
}
if (attempt > 0) {
final int delay = (attempt * 5000);

3
dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/bipaffiliations/PrepareAffiliationRelationsTest.java
View File

@ -112,7 +112,6 @@ public class PrepareAffiliationRelationsTest {
.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
.map(aa -> ((Relation) aa.getPayload()));
// count the number of relations
assertEquals(150, tmp.count());// 18 + 24 *3 + 30 * 2 =
@ -173,7 +172,6 @@ public class PrepareAffiliationRelationsTest {
+ IdentifierFactory.md5("https://ror.org/03265fv13") + "'")
.count());
Assertions
.assertEquals(
3, execVerification
@ -185,6 +183,5 @@ public class PrepareAffiliationRelationsTest {
+ IdentifierFactory.md5("https://ror.org/00a0n9e72") + "'")
.count());
}
}

6
dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/collection/plugin/osf/OsfPreprintsCollectorPluginTest.java
View File

@ -50,7 +50,8 @@ public class OsfPreprintsCollectorPluginTest {
@Test
@Disabled
void test_one() throws CollectorException {
this.plugin.collect(this.api, new AggregatorReport())
this.plugin
.collect(this.api, new AggregatorReport())
.limit(1)
.forEach(log::info);
}
@ -95,7 +96,8 @@ public class OsfPreprintsCollectorPluginTest {
final HttpConnector2 connector = new HttpConnector2();
try {
final String res = connector.getInputSource("https://api.osf.io/v2/preprints/ydtzx/contributors/?format=json");
final String res = connector
.getInputSource("https://api.osf.io/v2/preprints/ydtzx/contributors/?format=json");
System.out.println(res);
fail();
} catch (final Throwable e) {