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Merge pull request 'added the missing indicators files' (#120) from antonis.lempesis/dnet-hadoop:stable_ids into stable_ids 

Reviewed-on: #120
This commit is contained in:
Claudio Atzori 2021-06-29 15:57:39 +02:00
parent 986a8011ec ae18171212
commit 6d3f960238
2 changed files with 61 additions and 0 deletions
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19
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/indicators.sh Normal file
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
export TARGET=$1
export SCRIPT_PATH=$2
echo "Getting file from " $SCRIPT_PATH
hdfs dfs -copyToLocal $SCRIPT_PATH
echo "Creating indicators"
impala-shell -d ${TARGET} -q "invalidate metadata"
impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${TARGET}.\1;/" | impala-shell -c -f -
cat step16_7-createIndicatorsTables.sql | impala-shell -d $TARGET -f -
echo "Indicators created"

42
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_7-createIndicatorsTables.sql Normal file
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create table indi_pub_green_oa stored as parquet as
select distinct p.id, coalesce(green_oa, 0) as green_oa
from publication p
left outer join (
select p.id, 1 as green_oa
from publication p
join result_instance ri on ri.id = p.id
join datasource on datasource.id = ri.hostedby
where datasource.type like '%Repository%'
and (ri.accessright = 'Open Access'
or ri.accessright = 'Embargo')) tmp
on p.id= tmp.id;
create table indi_pub_grey_lit stored as parquet as
select distinct p.id, coalesce(grey_lit, 0) as grey_lit
from publication p
left outer join (
select p.id, 1 as grey_lit
from publication p
join result_classifications rt on rt.id = p.id
where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
not exists (select 1 from result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id;
create table indi_pub_doi_from_crossref stored as parquet as
select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
from publication p
left outer join
(select ri.id, 1 as doi_from_crossref from result_instance ri
join datasource d on d.id = ri.collectedfrom
where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp
on tmp.id=p.id;
create table indi_pub_gold_oa stored as parquet as
select distinct p.id, coalesce(gold_oa, 0) as gold_oa
from publication p
left outer join (
select p.id, 1 as gold_oa
from publication p
join result_instance ri on ri.id = p.id
join datasource on datasource.id = ri.hostedby
where datasource.id like '%doajarticles%') tmp
on p.id= tmp.id;