Merge pull request 'removed legacy actionmanager dependencies' (#454) from cleanup_actionmanager_deps into beta

Reviewed-on: #454
This commit is contained in:
Claudio Atzori 2024-07-17 10:20:44 +02:00
commit 6a19337dab
4 changed files with 937 additions and 1168 deletions

View File

@ -50,11 +50,12 @@
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-distcp</artifactId>
</dependency>
<!--
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-api</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-common</artifactId>
@ -93,6 +94,7 @@
</exclusion>
</exclusions>
</dependency>
-->
</dependencies>
</project>

View File

@ -4,7 +4,6 @@ package eu.dnetlib.dhp.actionmanager;
import java.io.Serializable;
import java.io.StringReader;
import java.util.List;
import java.util.NoSuchElementException;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
@ -22,13 +21,14 @@ import com.google.common.base.Splitter;
import com.google.common.collect.Iterables;
import com.google.common.collect.Sets;
import eu.dnetlib.actionmanager.rmi.ActionManagerException;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
public class ISClient implements Serializable {
private static final long serialVersionUID = 4632443200867340872L;
private static final Logger log = LoggerFactory.getLogger(ISClient.class);
private static final String INPUT_ACTION_SET_ID_SEPARATOR = ",";
@ -65,7 +65,7 @@ public class ISClient implements Serializable {
.map(t -> buildDirectory(basePath, t))
.collect(Collectors.toList()))
.orElseThrow(() -> new IllegalStateException("empty set list"));
} catch (ActionManagerException | ISLookUpException e) {
} catch (ISLookUpException e) {
throw new IllegalStateException("unable to query ActionSets info from the IS");
}
}
@ -89,31 +89,18 @@ public class ISClient implements Serializable {
return Joiner.on("/").join(basePath, t.getMiddle(), t.getRight());
}
private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
private String getBasePathHDFS(ISLookUpService isLookup) throws ISLookUpException {
return queryServiceProperty(isLookup, "basePath");
}
private String queryServiceProperty(ISLookUpService isLookup, final String propertyName)
throws ActionManagerException {
throws ISLookUpException {
final String q = "for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='ActionManagerServiceResourceType'] return $x//SERVICE_PROPERTIES/PROPERTY[./@ key='"
+ propertyName
+ "']/@value/string()";
log.debug("quering for service property: {}", q);
try {
final List<String> value = isLookup.quickSearchProfile(q);
return Iterables.getOnlyElement(value);
} catch (ISLookUpException e) {
String msg = "Error accessing service profile, using query: " + q;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (NoSuchElementException e) {
String msg = "missing service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
} catch (IllegalArgumentException e) {
String msg = "found more than one service property: " + propertyName;
log.error(msg, e);
throw new ActionManagerException(msg, e);
}
}
}

View File

@ -51,49 +51,6 @@
<artifactId>hadoop-distcp</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-api</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-common</artifactId>
<exclusions>
<exclusion>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-openaireplus-mapping-utils</artifactId>
</exclusion>
<exclusion>
<groupId>saxonica</groupId>
<artifactId>saxon</artifactId>
</exclusion>
<exclusion>
<groupId>saxonica</groupId>
<artifactId>saxon-dom</artifactId>
</exclusion>
<exclusion>
<groupId>jgrapht</groupId>
<artifactId>jgrapht</artifactId>
</exclusion>
<exclusion>
<groupId>net.sf.ehcache</groupId>
<artifactId>ehcache</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.*</groupId>
<artifactId>*</artifactId>
</exclusion>
<exclusion>
<groupId>apache</groupId>
<artifactId>*</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>

315
pom.xml
View File

@ -13,8 +13,7 @@
<distribution>repo</distribution>
<comments>This program is free software: you can redistribute it and/or modify it under the terms of the
GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the
License, or (at your option) any later version.
</comments>
License, or (at your option) any later version.</comments>
</license>
</licenses>
@ -23,7 +22,6 @@
<module>dhp-pace-core</module>
<module>dhp-common</module>
<module>dhp-workflows</module>
<module>dhp-shade-package</module>
</modules>
<issueManagement>
@ -49,19 +47,6 @@
</pluginRepositories>
<repositories>
<repository>
<id>Openaire-third-parties-snaphot</id>
<name>Openaire third parties Snapshot</name>
<url>https://maven.d4science.org/nexus/content/repositories/Openaire-third-parties-snaphot/</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>dnet45-releases</id>
<name>D-Net 45 releases</name>
@ -140,13 +125,6 @@
</repositories>
<dependencies>
<!-- Quick FIX not to remove lombok everywhere -->
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>1.18.28</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
@ -174,7 +152,7 @@
<dependencies>
<dependency>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-schemas</artifactId>
<artifactId>${dhp-schemas.artifact}</artifactId>
<version>${dhp-schemas.version}</version>
</dependency>
<dependency>
@ -226,78 +204,35 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${org.slf4j.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${org.slf4j.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${org.slf4j.version}</version>
<version>1.7.25</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j2-impl</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<!-- API bridge between log4j 1 and 2 -->
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-1.2-api</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>${dhp.commons.lang.version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-beanutils</artifactId>
<version>${commons-beanutils.version}</version>
</dependency>
<dependency>
<groupId>commons-validator</groupId>
<artifactId>commons-validator</artifactId>
<version>${commons-validator.version}</version>
<version>1.7</version>
</dependency>
<dependency>
<groupId>com.github.sisyphsu</groupId>
<artifactId>dateparser</artifactId>
<version>${dateparser.version}</version>
<version>1.0.7</version>
</dependency>
<dependency>
<groupId>me.xuender</groupId>
<artifactId>unidecode</artifactId>
<version>${unidecode.version}</version>
<version>0.0.7</version>
</dependency>
<dependency>
@ -310,13 +245,13 @@
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>${commons-codec.version}</version>
<version>1.9</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>${commons-io.version}</version>
<version>2.4</version>
</dependency>
<dependency>
@ -410,7 +345,7 @@
<dependency>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
<version>${zookeeper.version}</version>
<version>3.4.11</version>
</dependency>
<dependency>
@ -440,29 +375,6 @@
<scope>provided</scope>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-common</artifactId>
<version>${dnet-actionmanager-common.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-common</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-actionmanager-api</artifactId>
<version>${dnet-actionmanager-api.version}</version>
<exclusions>
<exclusion>
<groupId>eu.dnetlib</groupId>
<artifactId>cnr-misc-utils</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>cnr-rmi-api</artifactId>
@ -480,7 +392,6 @@
<artifactId>cxf-rt-transports-http</artifactId>
<version>3.1.5</version>
</dependency>
<dependency>
<groupId>javax.persistence</groupId>
<artifactId>javax.persistence-api</artifactId>
@ -570,11 +481,16 @@
<artifactId>commons-compress</artifactId>
<version>${common.compress.version}</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-csv -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>${common.csv.version}</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.poi/poi-ooxml -->
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
@ -629,12 +545,14 @@
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math3</artifactId>
<version>3.6.1</version>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
@ -655,7 +573,7 @@
<dependency>
<groupId>org.reflections</groupId>
<artifactId>reflections</artifactId>
<version>${reflections.version}</version>
<version>0.9.10</version>
</dependency>
<dependency>
@ -669,12 +587,6 @@
<artifactId>icu4j</artifactId>
<version>70.1</version>
</dependency>
<dependency>
<groupId>org.javassist</groupId>
<artifactId>javassist</artifactId>
<version>${javassist.version}</version>
</dependency>
</dependencies>
</dependencyManagement>
@ -742,7 +654,6 @@
<version>3.0.0-M4</version>
<configuration>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<trimStackTrace>false</trimStackTrace>
</configuration>
</plugin>
<plugin>
@ -812,7 +723,7 @@
<plugin>
<groupId>net.revelc.code</groupId>
<artifactId>impsort-maven-plugin</artifactId>
<version>1.6.2</version>
<version>1.4.1</version>
<configuration>
<groups>java.,javax.,org.,com.</groups>
<staticGroups>java,*</staticGroups>
@ -833,9 +744,7 @@
<groupId>org.antipathy</groupId>
<artifactId>mvn-scalafmt_${scala.binary.version}</artifactId>
<configuration>
<configLocation>
https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf
</configLocation>
<configLocation>https://code-repo.d4science.org/D-Net/dnet-hadoop/raw/branch/beta/dhp-build/dhp-code-style/src/main/resources/scalafmt/scalafmt.conf</configLocation>
<skipTestSources>false</skipTestSources>
<skipSources>false</skipSources>
<sourceDirectories>
@ -866,7 +775,7 @@
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.10</version>
<version>0.7.9</version>
<configuration>
<excludes>
<exclude>**/schemas/*</exclude>
@ -934,174 +843,88 @@
<dhp.site.stage.path>sftp://dnet-hadoop@static-web.d4science.org/dnet-hadoop</dhp.site.stage.path>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<maven.compiler.plugin.version>3.6.0</maven.compiler.plugin.version>
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
<!-- scala version -->
<scala.version>2.11.12</scala.version>
<scala.binary.version>2.11</scala.binary.version>
<!-- plugin versions -->
<maven.compiler.plugin.version>3.6.0</maven.compiler.plugin.version>
<maven.failsave.plugin.version>2.22.2</maven.failsave.plugin.version>
<properties.maven.plugin.version>2.0.1</properties.maven.plugin.version>
<net.alchim31.maven.version>4.0.1</net.alchim31.maven.version>
<!-- dependency versions -->
<apache.poi.version>4.1.2</apache.poi.version>
<cnr-rmi-api.version>[2.6.1]</cnr-rmi-api.version>
<common.compress.version>1.20</common.compress.version>
<common.csv.version>1.8</common.csv.version>
<common.text.version>1.8</common.text.version>
<commons-beanutils.version>1.9.4</commons-beanutils.version>
<commons-codec.version>1.9</commons-codec.version>
<commons.collections.version>3.2.1</commons.collections.version>
<commons-io.version>2.4</commons-io.version>
<commons.logging.version>1.1.3</commons.logging.version>
<commons-validator.version>1.7</commons-validator.version>
<dateparser.version>1.0.7</dateparser.version>
<dhp-schemas.version>[6.1.4-SNAPSHOT]</dhp-schemas.version>
<dhp.cdh.version>cdh5.9.2</dhp.cdh.version>
<dhp.commons.lang.version>3.5</dhp.commons.lang.version>
<dhp.guava.version>11.0.2</dhp.guava.version>
<dhp.hadoop.version>2.6.0-${dhp.cdh.version}</dhp.hadoop.version>
<dhp.jackson.version>2.9.6</dhp.jackson.version>
<dhp.oozie.version>4.1.0-${dhp.cdh.version}</dhp.oozie.version>
<dhp.site.skip>true</dhp.site.skip>
<dhp-schemas.artifact>dhp-schemas</dhp-schemas.artifact>
<sparksolr.version>3.6.0</sparksolr.version>
<dhp.spark.version>2.4.0.cloudera2</dhp.spark.version>
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>
<google.gson.version>2.2.2</google.gson.version>
<log4j.version>1.2.17</log4j.version>
<javassist.version>3.19.0-GA</javassist.version>
<json4s.version>3.5.3</json4s.version>
<jsonschemagenerator.version>4.13.0</jsonschemagenerator.version>
<dhp.jackson.version>2.9.6</dhp.jackson.version>
<dhp.commons.lang.version>3.5</dhp.commons.lang.version>
<dhp.site.skip>true</dhp.site.skip>
<dhp.guava.version>11.0.2</dhp.guava.version>
<scala.version>2.11.12</scala.version>
<scala.binary.version>2.11</scala.binary.version>
<scala-xml.version>1.3.0</scala-xml.version>
<junit-jupiter.version>5.6.1</junit-jupiter.version>
<mockito-core.version>3.3.3</mockito-core.version>
<mongodb.driver.version>3.4.2</mongodb.driver.version>
<okhttp.version>4.7.2</okhttp.version>
<org.apache.httpcomponents.version>4.5.3</org.apache.httpcomponents.version>
<org.slf4j.version>1.7.25</org.slf4j.version>
<reflections.version>0.9.10</reflections.version>
<scala-xml.version>1.3.0</scala-xml.version>
<solr.version>7.5.0</solr.version>
<sparksolr.version>3.6.0</sparksolr.version>
<unidecode.version>0.0.7</unidecode.version>
<vtd.version>[2.12,3.0)</vtd.version>
<zookeeper.version>3.4.6</zookeeper.version>
<dhp-schemas.version>[6.1.3]</dhp-schemas.version>
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>
<cnr-rmi-api.version>[2.6.1]</cnr-rmi-api.version>
<solr.version>7.5.0</solr.version>
<okhttp.version>4.7.2</okhttp.version>
<common.compress.version>1.20</common.compress.version>
<json4s.version>3.5.3</json4s.version>
<jsonschemagenerator.version>4.13.0</jsonschemagenerator.version>
<common.csv.version>1.8</common.csv.version>
<apache.poi.version>4.1.2</apache.poi.version>
<common.text.version>1.8</common.text.version>
<org.apache.httpcomponents.version>4.5.3</org.apache.httpcomponents.version>
<net.alchim31.maven.version>4.0.1</net.alchim31.maven.version>
<google.gson.version>2.2.2</google.gson.version>
<commons.logging.version>1.1.3</commons.logging.version>
<commons.collections.version>3.2.1</commons.collections.version>
</properties>
<!-- Build with scala 12 and Spark 3.4 -->
<profiles>
<profile>
<id>spark-34</id>
<id>scala-2.12</id>
<properties>
<scala.binary.version>2.12</scala.binary.version>
<scala.version>2.12.18</scala.version>
<scala-xml.version>1.3.0</scala-xml.version>
<!-- scala-xml.version>2.1.0</scala-xml.version -->
<!-- plugin versions -->
<net.alchim31.maven.version>4.8.1</net.alchim31.maven.version>
<!-- dependencies -->
<common.compress.version>1.22</common.compress.version>
<common.csv.version>1.8</common.csv.version>
<common.text.version>1.10.0</common.text.version>
<commons-beanutils.version>1.9.4</commons-beanutils.version>
<commons-codec.version>1.15</commons-codec.version>
<commons.collections.version>3.2.2</commons.collections.version>
<commons-io.version>2.11.0</commons-io.version>
<commons.logging.version>1.1.3</commons.logging.version>
<commons-validator.version>1.7</commons-validator.version>
<dhp.guava.version>14.0.1</dhp.guava.version>
<solr.version>8.11.0</solr.version>
<sparksolr.version>4.0.4</sparksolr.version>
<dhp.spark.version>3.4.2.openaire</dhp.spark.version>
<sparksolr.version>4.0.2</sparksolr.version>
<dhp.spark.version>3.4.1</dhp.spark.version>
<dhp.jackson.version>2.14.2</dhp.jackson.version>
<dhp.commons.lang.version>3.12.0</dhp.commons.lang.version>
<log4j.version>2.19.0</log4j.version>
<json4s.version>3.7.0-M11</json4s.version>
<javassist.version>3.25.0-GA</javassist.version>
<okhttp.version>4.10.0</okhttp.version>
<org.slf4j.version>2.0.6</org.slf4j.version>
<reflections.version>0.10.2</reflections.version>
<zookeeper.version>3.6.3</zookeeper.version>
</properties>
</profile>
<profile>
<id>spark-35</id>
<properties>
<scala.binary.version>2.12</scala.binary.version>
<scala.version>2.12.18</scala.version>
<scala-xml.version>1.3.0</scala-xml.version>
<!-- plugin versions -->
<net.alchim31.maven.version>4.8.1</net.alchim31.maven.version>
<!-- dependencies -->
<common.compress.version>1.23.0</common.compress.version>
<common.csv.version>1.8</common.csv.version>
<common.text.version>1.10.0</common.text.version>
<commons-beanutils.version>1.9.4</commons-beanutils.version>
<commons-codec.version>1.16.0</commons-codec.version>
<commons.collections.version>3.2.2</commons.collections.version>
<commons-io.version>2.13.0</commons-io.version>
<commons.logging.version>1.1.3</commons.logging.version>
<commons-validator.version>1.7</commons-validator.version>
<dhp.guava.version>14.0.1</dhp.guava.version>
<solr.version>8.11.0</solr.version>
<sparksolr.version>4.0.4</sparksolr.version>
<dhp.spark.version>3.5.1.openaire-SNAPSHOT</dhp.spark.version>
<dhp.jackson.version>2.15.2</dhp.jackson.version>
<dhp.commons.lang.version>3.12.0</dhp.commons.lang.version>
<log4j.version>2.20.0</log4j.version>
<json4s.version>3.7.0-M11</json4s.version>
<javassist.version>3.25.0-GA</javassist.version>
<okhttp.version>4.10.0</okhttp.version>
<org.slf4j.version>2.0.7</org.slf4j.version>
<reflections.version>0.10.2</reflections.version>
<zookeeper.version>3.6.3</zookeeper.version>
<!--
<dhp-schemas.artifact>dhp-schemas_${scala.binary.version}</dhp-schemas.artifact>
<dhp-schemas.version>3.17.2-SNAPSHOT</dhp-schemas.version>
-->
</properties>
</profile>
<!-- Activate ARM-compatible snappy dependency on new Silicon Macs -->
<profile>
<id>java11</id>
<id>arm-silicon-mac</id>
<activation>
<jdk>[11</jdk>
<os>
<arch>aarch64</arch>
<family>mac</family>
</os>
</activation>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.0.0-M4</version>
<configuration>
<!-- only for java 11+ to run spark in tests -->
<argLine>--add-opens=java.base/java.lang=ALL-UNNAMED
--add-opens=java.base/java.lang.invoke=ALL-UNNAMED
--add-opens=java.base/java.lang.reflect=ALL-UNNAMED
--add-opens=java.base/java.io=ALL-UNNAMED --add-opens=java.base/java.net=ALL-UNNAMED
--add-opens=java.base/java.nio=ALL-UNNAMED
--add-opens=java.base/java.util=ALL-UNNAMED
--add-opens=java.base/java.util.concurrent=ALL-UNNAMED
--add-opens=java.base/java.util.concurrent.atomic=ALL-UNNAMED
--add-opens=java.base/sun.nio.ch=ALL-UNNAMED
--add-opens=java.base/sun.nio.cs=ALL-UNNAMED
--add-opens=java.base/sun.security.action=ALL-UNNAMED
--add-opens=java.base/sun.util.calendar=ALL-UNNAMED
</argLine>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<trimStackTrace>false</trimStackTrace>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.xerial.snappy</groupId>
<artifactId>snappy-java</artifactId>
<version>1.1.8.4</version>
</dependency>
</dependencies>
</dependencyManagement>
</profile>
</profiles>
</project>