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Merge pull request '[UsageCount] Usage count per result split by datasource' (#318) from UsageStatsRecordDS into beta 

Reviewed-on: #318
This commit is contained in:
Miriam Baglioni 2024-04-02 10:21:39 +02:00
parent 24227ab598 a418dacb47
commit 64cbd8abe9
12 changed files with 560 additions and 17 deletions
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100
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionUsageJob.java
View File

@ -5,6 +5,7 @@ import static eu.dnetlib.dhp.actionmanager.Constants.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Optional;
@ -13,7 +14,9 @@ import org.apache.commons.io.IOUtils;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.FilterFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.api.java.function.MapGroupsFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
@ -68,18 +71,56 @@ public class SparkAtomicActionUsageJob implements Serializable {
final String workingPath = parser.get("workingPath");
final String datasourcePath = parser.get("datasourcePath");
runWithSparkHiveSession(
conf,
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputPath);
prepareData(dbname, spark, workingPath + "/usageDb", "usage_stats", "result_id");
prepareResultData(
dbname, spark, workingPath + "/usageDb",
"usage_stats",
"result_id",
"repository_id",
datasourcePath);
prepareData(dbname, spark, workingPath + "/projectDb", "project_stats", "id");
prepareData(dbname, spark, workingPath + "/datasourceDb", "datasource_stats", "repository_id");
writeActionSet(spark, workingPath, outputPath);
});
}
private static void prepareResultData(String dbname, SparkSession spark, String workingPath, String tableName,
String resultAttributeName, String datasourceAttributeName,
String datasourcePath) {
Dataset<UsageStatsResultModel> resultModel = spark
.sql(
String
.format(
"select %s as id, %s as datasourceId, sum(downloads) as downloads, sum(views) as views " +
"from %s.%s group by %s, %s",
resultAttributeName, datasourceAttributeName, dbname, tableName, resultAttributeName,
datasourceAttributeName))
.as(Encoders.bean(UsageStatsResultModel.class));
Dataset<Datasource> datasource = readPath(spark, datasourcePath, Datasource.class)
.filter((FilterFunction<Datasource>) d -> !d.getDataInfo().getDeletedbyinference())
.map((MapFunction<Datasource, Datasource>) d -> {
d.setId(d.getId().substring(3));
return d;
}, Encoders.bean(Datasource.class));
resultModel
.joinWith(datasource, resultModel.col("datasourceId").equalTo(datasource.col("id")), "left")
.map((MapFunction<Tuple2<UsageStatsResultModel, Datasource>, UsageStatsResultModel>) t2 -> {
UsageStatsResultModel usrm = t2._1();
usrm.setDatasourceId(usrm.getDatasourceId() + "||" + t2._2().getOfficialname().getValue());
return usrm;
}, Encoders.bean(UsageStatsResultModel.class))
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(workingPath);
}
private static void prepareData(String dbname, SparkSession spark, String workingPath, String tableName,
String attribute_name) {
spark
@ -115,15 +156,62 @@ public class SparkAtomicActionUsageJob implements Serializable {
}
public static Measure newMeasureInstance(String id) {
Measure m = new Measure();
m.setId(id);
m.setUnit(new ArrayList<>());
return m;
}
private static Dataset<Result> getFinalIndicatorsResult(SparkSession spark, String inputPath) {
return readPath(spark, inputPath, UsageStatsModel.class)
.map((MapFunction<UsageStatsModel, Result>) usm -> {
return readPath(spark, inputPath, UsageStatsResultModel.class)
.groupByKey((MapFunction<UsageStatsResultModel, String>) usm -> usm.getId(), Encoders.STRING())
.mapGroups((MapGroupsFunction<String, UsageStatsResultModel, Result>) (k, it) -> {
Result r = new Result();
r.setId("50|" + usm.getId());
r.setMeasures(getMeasure(usm.getDownloads(), usm.getViews()));
r.setId("50|" + k);
// id = download or view and unit = list of key value pairs
Measure download = newMeasureInstance("downloads");
Measure view = newMeasureInstance("views");
UsageStatsResultModel first = it.next();
addCountForDatasource(download, first, view);
it.forEachRemaining(usm -> {
addCountForDatasource(download, usm, view);
});
r.setMeasures(Arrays.asList(download, view));
return r;
}, Encoders.bean(Result.class));
}, Encoders.bean(Result.class))
// .map((MapFunction<UsageStatsResultModel, Result>) usm -> {
// Result r = new Result();
// r.setId("50|" + usm.getId());
// r.setMeasures(getMeasure(usm.getDownloads(), usm.getViews()));
// return r;
// }, Encoders.bean(Result.class));
;
}
private static void addCountForDatasource(Measure download, UsageStatsResultModel usm, Measure view) {
DataInfo dataInfo = OafMapperUtils
.dataInfo(
false,
UPDATE_DATA_INFO_TYPE,
true,
false,
OafMapperUtils
.qualifier(
UPDATE_MEASURE_USAGE_COUNTS_CLASS_ID,
UPDATE_CLASS_NAME,
ModelConstants.DNET_PROVENANCE_ACTIONS,
ModelConstants.DNET_PROVENANCE_ACTIONS),
"");
download
.getUnit()
.add(
OafMapperUtils
.newKeyValueInstance(usm.getDatasourceId(), String.valueOf(usm.getDownloads()), dataInfo));
view
.getUnit()
.add(OafMapperUtils.newKeyValueInstance(usm.getDatasourceId(), String.valueOf(usm.getViews()), dataInfo));
}
private static Dataset<Project> getFinalIndicatorsProject(SparkSession spark, String inputPath) {

18
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/usagestats/UsageStatsResultModel.java Normal file
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@ -0,0 +1,18 @@
package eu.dnetlib.dhp.actionmanager.usagestats;
/**
* @author miriam.baglioni
* @Date 30/06/23
*/
public class UsageStatsResultModel extends UsageStatsModel {
private String datasourceId;
public String getDatasourceId() {
return datasourceId;
}
public void setDatasourceId(String datasourceId) {
this.datasourceId = datasourceId;
}
}

6
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/usagestats/input_actionset_parameter.json
View File

@ -28,5 +28,11 @@
"paramLongName": "workingPath",
"paramDescription": "the workingPath where to save the content of the usage_stats table",
"paramRequired": true
},
{
"paramName": "dp",
"paramLongName": "datasourcePath",
"paramDescription": "the workingPath where to save the content of the usage_stats table",
"paramRequired": true
}
]

1
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/usagestats/oozie_app/workflow.xml
View File

@ -90,6 +90,7 @@
<arg>--outputPath</arg><arg>${outputPath}</arg>
<arg>--usagestatsdb</arg><arg>${usagestatsdb}</arg>
<arg>--workingPath</arg><arg>${workingDir}</arg>
<arg>--datasourcePath</arg><arg>${datasourcePath}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>

407
dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/usagestats/SparkAtomicActionCountJobTest.java
View File

@ -24,6 +24,7 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.oaf.Measure;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Result;
@ -66,10 +67,380 @@ public class SparkAtomicActionCountJobTest {
spark.stop();
}
@Test
void testUsageStatsDb2() {
String usageScoresPath = getClass()
.getResource("/eu/dnetlib/dhp/actionmanager/usagestats/test2")
.getPath();
SparkAtomicActionUsageJob.writeActionSet(spark, usageScoresPath, workingDir.toString() + "/actionSet");
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
JavaRDD<AtomicAction> tmp = sc
.sequenceFile(workingDir.toString() + "/actionSet", Text.class, Text.class)
.map(usm -> OBJECT_MAPPER.readValue(usm._2.getBytes(), AtomicAction.class));
// .map(aa -> (Result) aa.getPayload());
Assertions.assertEquals(7, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("50|")).count());
Assertions.assertEquals(9, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("10|")).count());
Assertions.assertEquals(9, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("40|")).count());
tmp.foreach(r -> Assertions.assertEquals(2, ((OafEntity) r.getPayload()).getMeasures().size()));
tmp
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(u -> Assertions.assertFalse(u.getDataInfo().getDeletedbyinference()))));
tmp
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m.getUnit().stream().forEach(u -> Assertions.assertTrue(u.getDataInfo().getInferred()))));
tmp
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(u -> Assertions.assertFalse(u.getDataInfo().getInvisible()))));
tmp
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"measure:usage_counts",
u.getDataInfo().getProvenanceaction().getClassid()))));
tmp
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"Inferred by OpenAIRE",
u.getDataInfo().getProvenanceaction().getClassname()))));
tmp
.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("40|"))
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"count",
u.getKey()))));
Assertions
.assertEquals(
1,
tmp
.filter(
r -> ((OafEntity) r.getPayload())
.getId()
.equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6"))
.count());
OafEntity entity = (OafEntity) tmp
.filter(
aa -> ((OafEntity) aa.getPayload()).getId().equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6"))
.first()
.getPayload();
entity
.getMeasures()
.stream()
.forEach(
m -> Assertions.assertEquals(3, m.getUnit().size()));
Measure downloads = entity
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.findFirst()
.get();
Assertions
.assertEquals(
String.valueOf(0),
downloads.getUnit().stream().filter(u -> u.getKey().equals("10|fake1")).findFirst().get().getValue());
Assertions
.assertEquals(
String.valueOf(0),
downloads.getUnit().stream().filter(u -> u.getKey().equals("10|fake2")).findFirst().get().getValue());
Assertions
.assertEquals(
String.valueOf(1),
downloads.getUnit().stream().filter(u -> u.getKey().equals("10|fake3")).findFirst().get().getValue());
Measure views = entity
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.findFirst()
.get();
Assertions
.assertEquals(
String.valueOf(5),
views.getUnit().stream().filter(u -> u.getKey().equals("10|fake1")).findFirst().get().getValue());
Assertions
.assertEquals(
String.valueOf(1),
views.getUnit().stream().filter(u -> u.getKey().equals("10|fake2")).findFirst().get().getValue());
Assertions
.assertEquals(
String.valueOf(3),
views.getUnit().stream().filter(u -> u.getKey().equals("10|fake3")).findFirst().get().getValue());
tmp
.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("10|"))
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"count",
u.getKey()))));
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"5",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"1",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"2",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"6",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"5",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"1",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"2",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"6",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
}
@Test
void testMatch() {
String usageScoresPath = getClass()
.getResource("/eu/dnetlib/dhp/actionmanager/usagestats")
.getResource("/eu/dnetlib/dhp/actionmanager/usagestats/test1")
.getPath();
SparkAtomicActionUsageJob.writeActionSet(spark, usageScoresPath, workingDir.toString() + "/actionSet");
@ -144,6 +515,39 @@ public class SparkAtomicActionCountJobTest {
u.getDataInfo().getProvenanceaction().getClassname()))));
tmp
.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("40|"))
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"count",
u.getKey()))));
tmp
.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("50|"))
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m
.getUnit()
.stream()
.forEach(
u -> Assertions
.assertEquals(
"10|fake1",
u.getKey()))));
tmp
.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("10|"))
.foreach(
r -> ((OafEntity) r.getPayload())
.getMeasures()
@ -465,5 +869,4 @@ public class SparkAtomicActionCountJobTest {
.get(0)
.getValue());
}
}

0
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/datasourceDb → dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/test1/datasourceDb
View File

0
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/projectDb → dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/test1/projectDb
View File

9
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/test1/usageDb Normal file
View File

@ -0,0 +1,9 @@
{"id":"dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6","datasourceId":"10|fake1","downloads":0,"views":5}
{"id":"doi_________::17eda2ff77407538fbe5d3d719b9d1c0","datasourceId":"10|fake1","downloads":0,"views":1}
{"id":"doi_________::1d4dc08605fd0a2be1105d30c63bfea1","datasourceId":"10|fake1","downloads":1,"views":3}
{"id":"doi_________::2e3527822854ca9816f6dfea5bff61a8","datasourceId":"10|fake1","downloads":1,"views":1}
{"id":"doi_________::3085e4c6e051378ca6157fe7f0430c1f","datasourceId":"10|fake1","downloads":2,"views":6}
{"id":"doi_________::33f710e6dd30cc5e67e35b371ddc33cf","datasourceId":"10|fake1","downloads":0,"views":1}
{"id":"doi_________::39738ebf10654732dd3a7af9f24655f8","datasourceId":"10|fake1","downloads":1,"views":3}
{"id":"doi_________::3c3b65f07c1a06c7894397eda1d11bbf","datasourceId":"10|fake1","downloads":1,"views":10}
{"id":"doi_________::4938a71a884dd481d329657aa543b850","datasourceId":"10|fake1","downloads":0,"views":3}

9
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/test2/datasourceDb Normal file
View File

@ -0,0 +1,9 @@
{"id":"d1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":5}
{"id":"d11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"d11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"d11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"d12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":6}
{"id":"d12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"d12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"d13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":10}
{"id":"d13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

9
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/usagestats/test2/projectDb Normal file
View File

@ -0,0 +1,9 @@
{"id":"f1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":5}
{"id":"f11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"f11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"f11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"f12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":6}
{"id":"f12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"f12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"f13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":10}
{"id":"f13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

9
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