From 5ecacad70a0539bd94e336ad604cc32ac8e0ce1a Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Wed, 13 May 2020 17:01:11 +0200 Subject: [PATCH] fixed default resource typing in Oaf/Odf mapping --- .../raw/AbstractMdRecordToOafMapper.java | 168 +++++++++--------- 1 file changed, 84 insertions(+), 84 deletions(-) diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java index fd12716b4..be0b91022 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java @@ -64,7 +64,7 @@ public abstract class AbstractMdRecordToOafMapper { } protected static final Qualifier MAIN_TITLE_QUALIFIER = qualifier( - "main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title"); + "main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title"); protected AbstractMdRecordToOafMapper(final Map code2name) { this.code2name = code2name; @@ -75,20 +75,20 @@ public abstract class AbstractMdRecordToOafMapper { DocumentFactory.getInstance().setXPathNamespaceURIs(nsContext); final Document doc = DocumentHelper - .parseText( - xml.replaceAll(DATACITE_SCHEMA_KERNEL_4, DATACITE_SCHEMA_KERNEL_3)); + .parseText( + xml.replaceAll(DATACITE_SCHEMA_KERNEL_4, DATACITE_SCHEMA_KERNEL_3)); final String type = doc.valueOf("//dr:CobjCategory/@type"); final KeyValue collectedFrom = getProvenanceDatasource( - doc, "//oaf:collectedFrom/@id", "//oaf:collectedFrom/@name"); + doc, "//oaf:collectedFrom/@id", "//oaf:collectedFrom/@name"); if (collectedFrom == null) { return null; } final KeyValue hostedBy = StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id")) - ? collectedFrom - : getProvenanceDatasource(doc, "//oaf:hostedBy/@id", "//oaf:hostedBy/@name"); + ? collectedFrom + : getProvenanceDatasource(doc, "//oaf:hostedBy/@id", "//oaf:hostedBy/@name"); if (hostedBy == null) { return null; @@ -112,22 +112,21 @@ public abstract class AbstractMdRecordToOafMapper { } return keyValue( - createOpenaireId(10, dsId, true), - dsName); + createOpenaireId(10, dsId, true), + dsName); } protected List createOafs( - final Document doc, - final String type, - final KeyValue collectedFrom, - final KeyValue hostedBy, - final DataInfo info, - final long lastUpdateTimestamp) { + final Document doc, + final String type, + final KeyValue collectedFrom, + final KeyValue hostedBy, + final DataInfo info, + final long lastUpdateTimestamp) { final List oafs = new ArrayList<>(); switch (type.toLowerCase()) { - case "": case "publication": final Publication p = new Publication(); populateResultFields(p, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp); @@ -138,7 +137,7 @@ public abstract class AbstractMdRecordToOafMapper { case "dataset": final Dataset d = new Dataset(); populateResultFields(d, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp); - d.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE); + d.setResulttype(DATASET_DEFAULT_RESULTTYPE); d.setStoragedate(prepareDatasetStorageDate(doc, info)); d.setDevice(prepareDatasetDevice(doc, info)); d.setSize(prepareDatasetSize(doc, info)); @@ -158,6 +157,7 @@ public abstract class AbstractMdRecordToOafMapper { s.setProgrammingLanguage(prepareSoftwareProgrammingLanguage(doc, info)); oafs.add(s); break; + case "": case "otherresearchproducts": default: final OtherResearchProduct o = new OtherResearchProduct(); @@ -179,10 +179,10 @@ public abstract class AbstractMdRecordToOafMapper { } private List addProjectRels( - final Document doc, - final KeyValue collectedFrom, - final DataInfo info, - final long lastUpdateTimestamp) { + final Document doc, + final KeyValue collectedFrom, + final DataInfo info, + final long lastUpdateTimestamp) { final List res = new ArrayList<>(); @@ -196,15 +196,15 @@ public abstract class AbstractMdRecordToOafMapper { final String projectId = createOpenaireId(40, originalId, true); res - .add( - getRelation( - docId, projectId, RESULT_PROJECT, OUTCOME, IS_PRODUCED_BY, collectedFrom, info, - lastUpdateTimestamp)); + .add( + getRelation( + docId, projectId, RESULT_PROJECT, OUTCOME, IS_PRODUCED_BY, collectedFrom, info, + lastUpdateTimestamp)); res - .add( - getRelation( - projectId, docId, RESULT_PROJECT, OUTCOME, PRODUCES, collectedFrom, info, - lastUpdateTimestamp)); + .add( + getRelation( + projectId, docId, RESULT_PROJECT, OUTCOME, PRODUCES, collectedFrom, info, + lastUpdateTimestamp)); } } @@ -212,7 +212,7 @@ public abstract class AbstractMdRecordToOafMapper { } protected Relation getRelation(String source, String target, String relType, String subRelType, String relClass, - KeyValue collectedFrom, DataInfo info, long lastUpdateTimestamp) { + KeyValue collectedFrom, DataInfo info, long lastUpdateTimestamp) { final Relation rel = new Relation(); rel.setRelType(relType); rel.setSubRelType(subRelType); @@ -226,27 +226,27 @@ public abstract class AbstractMdRecordToOafMapper { } protected abstract List addOtherResultRels( - final Document doc, - final KeyValue collectedFrom, - final DataInfo info, - final long lastUpdateTimestamp); + final Document doc, + final KeyValue collectedFrom, + final DataInfo info, + final long lastUpdateTimestamp); private void populateResultFields( - final Result r, - final Document doc, - final KeyValue collectedFrom, - final KeyValue hostedBy, - final DataInfo info, - final long lastUpdateTimestamp) { + final Result r, + final Document doc, + final KeyValue collectedFrom, + final KeyValue hostedBy, + final DataInfo info, + final long lastUpdateTimestamp) { r.setDataInfo(info); r.setLastupdatetimestamp(lastUpdateTimestamp); r.setId(createOpenaireId(50, doc.valueOf("//dri:objIdentifier"), false)); r.setOriginalId(Arrays.asList(doc.valueOf("//dri:objIdentifier"))); r.setCollectedfrom(Arrays.asList(collectedFrom)); r - .setPid( - prepareListStructProps( - doc, "//oaf:identifier", "@identifierType", "dnet:pid_types", "dnet:pid_types", info)); + .setPid( + prepareListStructProps( + doc, "//oaf:identifier", "@identifierType", "dnet:pid_types", "dnet:pid_types", info)); r.setDateofcollection(doc.valueOf("//dr:dateOfCollection")); r.setDateoftransformation(doc.valueOf("//dr:dateOfTransformation")); r.setExtraInfo(new ArrayList<>()); // NOT PRESENT IN MDSTORES @@ -289,7 +289,7 @@ public abstract class AbstractMdRecordToOafMapper { protected abstract Qualifier prepareResourceType(Document doc, DataInfo info); protected abstract List prepareInstances( - Document doc, DataInfo info, KeyValue collectedfrom, KeyValue hostedby); + Document doc, DataInfo info, KeyValue collectedfrom, KeyValue hostedby); protected abstract List> prepareSources(Document doc, DataInfo info); @@ -314,13 +314,13 @@ public abstract class AbstractMdRecordToOafMapper { protected abstract List prepareAuthors(Document doc, DataInfo info); protected abstract List> prepareOtherResearchProductTools( - Document doc, DataInfo info); + Document doc, DataInfo info); protected abstract List> prepareOtherResearchProductContactGroups( - Document doc, DataInfo info); + Document doc, DataInfo info); protected abstract List> prepareOtherResearchProductContactPersons( - Document doc, DataInfo info); + Document doc, DataInfo info); protected abstract Qualifier prepareSoftwareProgrammingLanguage(Document doc, DataInfo info); @@ -329,7 +329,7 @@ public abstract class AbstractMdRecordToOafMapper { protected abstract List prepareSoftwareLicenses(Document doc, DataInfo info); protected abstract List> prepareSoftwareDocumentationUrls( - Document doc, DataInfo info); + Document doc, DataInfo info); protected abstract List prepareDatasetGeoLocations(Document doc, DataInfo info); @@ -359,37 +359,37 @@ public abstract class AbstractMdRecordToOafMapper { final String edition = n.valueOf("@edition"); if (StringUtils.isNotBlank(name)) { return journal( - name, - issnPrinted, - issnOnline, - issnLinking, - ep, - iss, - sp, - vol, - edition, - null, - null, - info); + name, + issnPrinted, + issnOnline, + issnLinking, + ep, + iss, + sp, + vol, + edition, + null, + null, + info); } } return null; } protected Qualifier prepareQualifier( - final Node node, final String xpath, final String schemeId, final String schemeName) { + final Node node, final String xpath, final String schemeId, final String schemeName) { final String classId = node.valueOf(xpath); final String className = code2name.get(classId); return qualifier(classId, className, schemeId, schemeName); } protected List prepareListStructProps( - final Node node, - final String xpath, - final String xpathClassId, - final String schemeId, - final String schemeName, - final DataInfo info) { + final Node node, + final String xpath, + final String xpathClassId, + final String schemeId, + final String schemeName, + final DataInfo info) { final List res = new ArrayList<>(); for (final Object o : node.selectNodes(xpath)) { final Node n = (Node) o; @@ -401,7 +401,7 @@ public abstract class AbstractMdRecordToOafMapper { } protected List prepareListStructProps( - final Node node, final String xpath, final Qualifier qualifier, final DataInfo info) { + final Node node, final String xpath, final Qualifier qualifier, final DataInfo info) { final List res = new ArrayList<>(); for (final Object o : node.selectNodes(xpath)) { final Node n = (Node) o; @@ -411,19 +411,19 @@ public abstract class AbstractMdRecordToOafMapper { } protected List prepareListStructProps( - final Node node, final String xpath, final DataInfo info) { + final Node node, final String xpath, final DataInfo info) { final List res = new ArrayList<>(); for (final Object o : node.selectNodes(xpath)) { final Node n = (Node) o; res - .add( - structuredProperty( - n.getText(), - n.valueOf("@classid"), - n.valueOf("@classname"), - n.valueOf("@schemeid"), - n.valueOf("@schemename"), - info)); + .add( + structuredProperty( + n.getText(), + n.valueOf("@classid"), + n.valueOf("@classname"), + n.valueOf("@schemeid"), + n.valueOf("@schemename"), + info)); } return res; } @@ -450,7 +450,7 @@ public abstract class AbstractMdRecordToOafMapper { if (n == null) { return dataInfo( - false, null, false, false, REPOSITORY_PROVENANCE_ACTIONS, "0.9"); + false, null, false, false, REPOSITORY_PROVENANCE_ACTIONS, "0.9"); } final String paClassId = n.valueOf("./oaf:provenanceaction/@classid"); @@ -464,12 +464,12 @@ public abstract class AbstractMdRecordToOafMapper { final String trust = n.valueOf("./oaf:trust"); return dataInfo( - deletedbyinference, - inferenceprovenance, - inferred, - false, - qualifier(paClassId, paClassName, paSchemeId, paSchemeName), - trust); + deletedbyinference, + inferenceprovenance, + inferred, + false, + qualifier(paClassId, paClassName, paSchemeId, paSchemeName), + trust); } protected Field prepareField(final Node node, final String xpath, final DataInfo info) { @@ -477,7 +477,7 @@ public abstract class AbstractMdRecordToOafMapper { } protected List> prepareListFields( - final Node node, final String xpath, final DataInfo info) { + final Node node, final String xpath, final DataInfo info) { return listFields(info, prepareListString(node, xpath)); }