test for the variuos steps of project update with programme
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parent
9447d78ef3
commit
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@ -1,43 +1,41 @@
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package eu.dnetlib.dhp.actionmanager.project;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.List;
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import org.apache.commons.io.IOUtils;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVParser;
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public class ReadCSVTest {
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public class CSVParserTest {
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private static Path workingDir;
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private static Path workingDir;
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.ReadCSVTest.class.getSimpleName());
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(CSVParserTest.class.getSimpleName());
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}
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}
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@Test
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public void readProgrammeTest() throws Exception {
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@Test
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public void readProgrammeTest() throws Exception {
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String programmecsv = IOUtils.toString(getClass()
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.getClassLoader().getResourceAsStream("eu/dnetlib/dhp/actionmanager/project/programme.csv"));
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ReadCSV
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.main(
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new String[] {
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"-fileURL",
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"http://cordis.europa.eu/data/reference/cordisref-H2020programmes.csv",
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"-outputPath",
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workingDir.toString() + "/project",
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"-hdfsPath",
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getClass().getResource("/eu/dnetlib/dhp/blacklist/blacklist").getPath(),
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"-mergesPath",
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getClass().getResource("/eu/dnetlib/dhp/blacklist/mergesRelOneMerge").getPath(),
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});
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String programmecsv = IOUtils
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.toString(
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getClass()
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.getClassLoader()
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.getResourceAsStream("eu/dnetlib/dhp/actionmanager/project/programme.csv"));
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CSVParser csvParser = new CSVParser();
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List<Object> pl = csvParser.parse(programmecsv, "eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme");
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System.out.println(pl.size());
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}
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}
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}
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@ -1,4 +1,94 @@
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package eu.dnetlib.dhp.actionmanager.project;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
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public class PrepareProgrammeTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class
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.getClassLoader();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(PrepareProgrammeTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void numberDistinctProgrammeTest() throws Exception {
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PrepareProgramme
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.main(
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new String[] {
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"-isSparkSessionManaged",
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Boolean.FALSE.toString(),
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"-programmePath",
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getClass().getResource("/eu/dnetlib/dhp/actionmanager/whole_programme.json").getPath(),
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"-outputPath",
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workingDir.toString() + "/preparedProgramme"
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});
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final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
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JavaRDD<CSVProgramme> tmp = sc
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.textFile(workingDir.toString() + "/preparedProgramme")
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.map(item -> OBJECT_MAPPER.readValue(item, CSVProgramme.class));
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Assertions.assertEquals(277, tmp.count());
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Dataset<CSVProgramme> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProgramme.class));
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Assertions.assertEquals(0, verificationDataset.filter("shortTitle =''").count());
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}
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}
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@ -1,4 +1,94 @@
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package eu.dnetlib.dhp.actionmanager.project;
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public class SparkUpdateProjectSet {
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.schema.oaf.Project;
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public class SparkUpdateProjectTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class
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.getClassLoader();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(SparkUpdateProjectTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void numberDistinctProgrammeTest() throws Exception {
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SparkAtomicActionJob
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.main(
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new String[] {
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"-isSparkSessionManaged",
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Boolean.FALSE.toString(),
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"-programmePath",
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getClass().getResource("/eu/dnetlib/dhp/actionmanager/preparedProgramme_whole.json").getPath(),
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"-projectPath",
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getClass().getResource("/eu/dnetlib/dhp/actionmanager/projects_subset.json").getPath(),
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"-outputPath",
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workingDir.toString() + "/actionSet"
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});
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final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.textFile(workingDir.toString() + "/actionSet")
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.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
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Assertions.assertEquals(14, tmp.count());
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// Dataset<CSVProgramme> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProgramme.class));
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//
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// Assertions.assertEquals(0, verificationDataset.filter("shortTitle =''").count());
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}
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}
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@ -1,4 +1,39 @@
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package eu.dnetlib.dhp.actionmanager.project.httpconnector;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.http.conn.ssl.SSLConnectionSocketFactory;
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import org.apache.http.ssl.SSLContextBuilder;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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public class HttpConnectorTest {
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private static final Log log = LogFactory.getLog(HttpConnectorTest.class);
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private static HttpConnector connector;
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private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020programmes.csv";
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private static final String URL_MISCONFIGURED_SERVER = "https://www.alexandria.unisg.ch/cgi/oai2?verb=Identify";
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private static final String URL_GOODSNI_SERVER = "https://air.unimi.it/oai/openaire?verb=Identify";
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private static final SSLContextBuilder sslContextBuilder = new SSLContextBuilder();
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private static SSLConnectionSocketFactory sslSocketFactory;
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@BeforeAll
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public static void setUp() {
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connector = new HttpConnector();
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}
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@Test
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public void testGetInputSource() throws CollectorServiceException {
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System.out.println(connector.getInputSource(URL));
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}
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@Test
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public void testGoodServers() throws CollectorServiceException {
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System.out.println(connector.getInputSource(URL_GOODSNI_SERVER));
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}
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}
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