Merge branch 'master' into deduptesting

dhp-common/pom.xml

@@ -13,6 +13,20 @@
 	<packaging>jar</packaging>
 
 	<dependencies>
+
+		<dependency>
+			<groupId>org.apache.hadoop</groupId>
+			<artifactId>hadoop-common</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.spark</groupId>
+			<artifactId>spark-core_2.11</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.spark</groupId>
+			<artifactId>spark-sql_2.11</artifactId>
+		</dependency>
+
 		<dependency>
 			<groupId>commons-cli</groupId>
 			<artifactId>commons-cli</artifactId>

dhp-common/src/main/java/eu/dnetlib/dhp/common/FunctionalInterfaceSupport.java

@@ -0,0 +1,56 @@
+package eu.dnetlib.dhp.common;
+
+import java.io.Serializable;
+import java.util.function.Supplier;
+
+/**
+ * Provides serializable and throwing extensions to standard functional interfaces.
+ */
+public class FunctionalInterfaceSupport {
+
+    private FunctionalInterfaceSupport() {
+    }
+
+    /**
+     * Serializable supplier of any kind of objects. To be used withing spark processing pipelines when supplying
+     * functions externally.
+     *
+     * @param <T>
+     */
+    @FunctionalInterface
+    public interface SerializableSupplier<T> extends Supplier<T>, Serializable {
+    }
+
+    /**
+     * Extension of consumer accepting functions throwing an exception.
+     *
+     * @param <T>
+     * @param <E>
+     */
+    @FunctionalInterface
+    public interface ThrowingConsumer<T, E extends Exception> {
+        void accept(T t) throws E;
+    }
+
+    /**
+     * Extension of supplier accepting functions throwing an exception.
+     *
+     * @param <T>
+     * @param <E>
+     */
+    @FunctionalInterface
+    public interface ThrowingSupplier<T, E extends Exception> {
+        T get() throws E;
+    }
+
+    /**
+     * Extension of runnable accepting functions throwing an exception.
+     *
+     * @param <E>
+     */
+    @FunctionalInterface
+    public interface ThrowingRunnable<E extends Exception> {
+        void run() throws E;
+    }
+
+}

dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java

@@ -0,0 +1,57 @@
+package eu.dnetlib.dhp.common;
+
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileStatus;
+import org.apache.hadoop.fs.FileSystem;
+import org.apache.hadoop.fs.Path;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Arrays;
+import java.util.List;
+import java.util.stream.Collectors;
+
+import static eu.dnetlib.dhp.common.ThrowingSupport.rethrowAsRuntimeException;
+
+/**
+ * HDFS utility methods.
+ */
+public class HdfsSupport {
+    private static final Logger logger = LoggerFactory.getLogger(HdfsSupport.class);
+
+    private HdfsSupport() {
+    }
+
+    /**
+     * Removes a path (file or dir) from HDFS.
+     *
+     * @param path          Path to be removed
+     * @param configuration Configuration of hadoop env
+     */
+    public static void remove(String path, Configuration configuration) {
+        logger.info("Removing path: {}", path);
+        rethrowAsRuntimeException(() -> {
+            Path f = new Path(path);
+            FileSystem fileSystem = FileSystem.get(configuration);
+            if (fileSystem.exists(f)) {
+                fileSystem.delete(f, true);
+            }
+        });
+    }
+
+    /**
+     * Lists hadoop files located below path or alternatively lists subdirs under path.
+     *
+     * @param path          Path to be listed for hadoop files
+     * @param configuration Configuration of hadoop env
+     * @return List with string locations of hadoop files
+     */
+    public static List<String> listFiles(String path, Configuration configuration) {
+        logger.info("Listing files in path: {}", path);
+        return rethrowAsRuntimeException(() -> Arrays
+                .stream(FileSystem.get(configuration).listStatus(new Path(path)))
+                .filter(FileStatus::isDirectory)
+                .map(x -> x.getPath().toString())
+                .collect(Collectors.toList()));
+    }
+}

dhp-common/src/main/java/eu/dnetlib/dhp/common/SparkSessionSupport.java

@@ -0,0 +1,71 @@
+package eu.dnetlib.dhp.common;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.SparkSession;
+
+import java.util.Objects;
+import java.util.function.Function;
+
+/**
+ * SparkSession utility methods.
+ */
+public class SparkSessionSupport {
+
+    private SparkSessionSupport() {
+    }
+
+    /**
+     * Runs a given function using SparkSession created using default builder and supplied SparkConf. Stops SparkSession
+     * when SparkSession is managed. Allows to reuse SparkSession created externally.
+     *
+     * @param conf                  SparkConf instance
+     * @param isSparkSessionManaged When true will stop SparkSession
+     * @param fn                    Consumer to be applied to constructed SparkSession
+     */
+    public static void runWithSparkSession(SparkConf conf,
+                                           Boolean isSparkSessionManaged,
+                                           ThrowingConsumer<SparkSession, Exception> fn) {
+        runWithSparkSession(c -> SparkSession.builder().config(c).getOrCreate(), conf, isSparkSessionManaged, fn);
+    }
+
+    /**
+     * Runs a given function using SparkSession created with hive support and using default builder and supplied SparkConf.
+     * Stops SparkSession when SparkSession is managed. Allows to reuse SparkSession created externally.
+     *
+     * @param conf                  SparkConf instance
+     * @param isSparkSessionManaged When true will stop SparkSession
+     * @param fn                    Consumer to be applied to constructed SparkSession
+     */
+    public static void runWithSparkHiveSession(SparkConf conf,
+                                           Boolean isSparkSessionManaged,
+                                           ThrowingConsumer<SparkSession, Exception> fn) {
+        runWithSparkSession(c -> SparkSession.builder().config(c).enableHiveSupport().getOrCreate(), conf, isSparkSessionManaged, fn);
+    }
+
+    /**
+     * Runs a given function using SparkSession created using supplied builder and supplied SparkConf. Stops SparkSession
+     * when SparkSession is managed. Allows to reuse SparkSession created externally.
+     *
+     * @param sparkSessionBuilder   Builder of SparkSession
+     * @param conf                  SparkConf instance
+     * @param isSparkSessionManaged When true will stop SparkSession
+     * @param fn                    Consumer to be applied to constructed SparkSession
+     */
+    public static void runWithSparkSession(Function<SparkConf, SparkSession> sparkSessionBuilder,
+                                           SparkConf conf,
+                                           Boolean isSparkSessionManaged,
+                                           ThrowingConsumer<SparkSession, Exception> fn) {
+        SparkSession spark = null;
+        try {
+            spark = sparkSessionBuilder.apply(conf);
+            fn.accept(spark);
+        } catch (Exception e) {
+            throw new RuntimeException(e);
+        } finally {
+            if (Objects.nonNull(spark) && isSparkSessionManaged) {
+                spark.stop();
+            }
+        }
+    }
+}

dhp-common/src/main/java/eu/dnetlib/dhp/common/ThrowingSupport.java

@@ -0,0 +1,76 @@
+package eu.dnetlib.dhp.common;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingRunnable;
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingSupplier;
+
+/**
+ * Exception handling utility methods.
+ */
+public class ThrowingSupport {
+
+    private ThrowingSupport() {
+    }
+
+    /**
+     * Executes given runnable and rethrows any exceptions as RuntimeException.
+     *
+     * @param fn  Runnable to be executed
+     * @param <E> Type of exception thrown
+     */
+    public static <E extends Exception> void rethrowAsRuntimeException(ThrowingRunnable<E> fn) {
+        try {
+            fn.run();
+        } catch (Exception e) {
+            throw new RuntimeException(e);
+        }
+    }
+
+    /**
+     * Executes given runnable and rethrows any exceptions as RuntimeException with custom message.
+     *
+     * @param fn  Runnable to be executed
+     * @param msg Message to be set for rethrown exception
+     * @param <E> Type of exception thrown
+     */
+    public static <E extends Exception> void rethrowAsRuntimeException(ThrowingRunnable<E> fn, String msg) {
+        try {
+            fn.run();
+        } catch (Exception e) {
+            throw new RuntimeException(msg, e);
+        }
+    }
+
+    /**
+     * Executes given supplier and rethrows any exceptions as RuntimeException.
+     *
+     * @param fn  Supplier to be executed
+     * @param <T> Type of returned value
+     * @param <E> Type of exception thrown
+     * @return Result of supplier execution
+     */
+    public static <T, E extends Exception> T rethrowAsRuntimeException(ThrowingSupplier<T, E> fn) {
+        try {
+            return fn.get();
+        } catch (Exception e) {
+            throw new RuntimeException(e);
+        }
+    }
+
+    /**
+     * Executes given supplier and rethrows any exceptions as RuntimeException with custom message.
+     *
+     * @param fn  Supplier to be executed
+     * @param msg Message to be set for rethrown exception
+     * @param <T> Type of returned value
+     * @param <E> Type of exception thrown
+     * @return Result of supplier execution
+     */
+    public static <T, E extends Exception> T rethrowAsRuntimeException(ThrowingSupplier<T, E> fn, String msg) {
+        try {
+            return fn.get();
+        } catch (Exception e) {
+            throw new RuntimeException(msg, e);
+        }
+    }
+
+}

dhp-common/src/test/java/eu/dnetlib/dhp/common/HdfsSupportTest.java

@@ -0,0 +1,78 @@
+package eu.dnetlib.dhp.common;
+
+import org.apache.hadoop.conf.Configuration;
+import org.junit.jupiter.api.Nested;
+import org.junit.jupiter.api.Test;
+import org.junit.jupiter.api.io.TempDir;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.Arrays;
+import java.util.List;
+import java.util.stream.Collectors;
+
+import static org.junit.jupiter.api.Assertions.*;
+
+public class HdfsSupportTest {
+
+    @Nested
+    class Remove {
+
+        @Test
+        public void shouldThrowARuntimeExceptionOnError() {
+            // when
+            assertThrows(RuntimeException.class, () ->
+                    HdfsSupport.remove(null, new Configuration()));
+        }
+
+        @Test
+        public void shouldRemoveADirFromHDFS(@TempDir Path tempDir) {
+            // when
+            HdfsSupport.remove(tempDir.toString(), new Configuration());
+
+            // then
+            assertFalse(Files.exists(tempDir));
+        }
+
+        @Test
+        public void shouldRemoveAFileFromHDFS(@TempDir Path tempDir) throws IOException {
+            // given
+            Path file = Files.createTempFile(tempDir, "p", "s");
+
+            // when
+            HdfsSupport.remove(file.toString(), new Configuration());
+
+            // then
+            assertFalse(Files.exists(file));
+        }
+    }
+
+    @Nested
+    class ListFiles {
+
+        @Test
+        public void shouldThrowARuntimeExceptionOnError() {
+            // when
+            assertThrows(RuntimeException.class, () ->
+                    HdfsSupport.listFiles(null, new Configuration()));
+        }
+
+        @Test
+        public void shouldListFilesLocatedInPath(@TempDir Path tempDir) throws IOException {
+            Path subDir1 = Files.createTempDirectory(tempDir, "list_me");
+            Path subDir2 = Files.createTempDirectory(tempDir, "list_me");
+
+            // when
+            List<String> paths = HdfsSupport.listFiles(tempDir.toString(), new Configuration());
+
+            // then
+            assertEquals(2, paths.size());
+            List<String> expecteds = Arrays.stream(new String[]{subDir1.toString(), subDir2.toString()})
+                    .sorted().collect(Collectors.toList());
+            List<String> actuals = paths.stream().sorted().collect(Collectors.toList());
+            assertTrue(actuals.get(0).contains(expecteds.get(0)));
+            assertTrue(actuals.get(1).contains(expecteds.get(1)));
+        }
+    }
+}

dhp-common/src/test/java/eu/dnetlib/dhp/common/SparkSessionSupportTest.java

@@ -0,0 +1,54 @@
+package eu.dnetlib.dhp.common;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.ThrowingConsumer;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.Nested;
+import org.junit.jupiter.api.Test;
+
+import java.util.function.Function;
+
+import static org.mockito.Mockito.*;
+
+public class SparkSessionSupportTest {
+
+    @Nested
+    class RunWithSparkSession {
+
+        @Test
+        public void shouldExecuteFunctionAndNotStopSparkSessionWhenSparkSessionIsNotManaged() throws Exception {
+            // given
+            SparkSession spark = mock(SparkSession.class);
+            SparkConf conf = mock(SparkConf.class);
+            Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
+            when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
+            ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
+
+            // when
+            SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, false, fn);
+
+            // then
+            verify(sparkSessionBuilder).apply(conf);
+            verify(fn).accept(spark);
+            verify(spark, never()).stop();
+        }
+
+        @Test
+        public void shouldExecuteFunctionAndStopSparkSessionWhenSparkSessionIsManaged() throws Exception {
+            // given
+            SparkSession spark = mock(SparkSession.class);
+            SparkConf conf = mock(SparkConf.class);
+            Function<SparkConf, SparkSession> sparkSessionBuilder = mock(Function.class);
+            when(sparkSessionBuilder.apply(conf)).thenReturn(spark);
+            ThrowingConsumer<SparkSession, Exception> fn = mock(ThrowingConsumer.class);
+
+            // when
+            SparkSessionSupport.runWithSparkSession(sparkSessionBuilder, conf, true, fn);
+
+            // then
+            verify(sparkSessionBuilder).apply(conf);
+            verify(fn).accept(spark);
+            verify(spark, times(1)).stop();
+        }
+    }
+}

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/EntityType.java

@@ -0,0 +1,23 @@
+package eu.dnetlib.dhp.schema.common;
+
+import eu.dnetlib.dhp.schema.oaf.OafEntity;
+
+/**
+ * Actual entity types in the Graph
+ */
+public enum EntityType {
+
+    publication, dataset, otherresearchproduct, software, datasource, organization, project;
+
+    /**
+     * Resolves the EntityType, given the relative class name
+     * @param clazz the given class name
+     * @param <T> actual OafEntity subclass
+     * @return the EntityType associated to the given class
+     */
+    public static <T extends OafEntity> EntityType fromClass(Class<T> clazz) {
+
+        return EntityType.valueOf(clazz.getSimpleName().toLowerCase());
+    }
+
+}

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/MainEntityType.java

@@ -0,0 +1,9 @@
+package eu.dnetlib.dhp.schema.common;
+
+/**
+ * Main entity types in the Graph
+ */
+public enum MainEntityType {
+
+    result, datasource, organization, project
+}

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/ModelSupport.java

@@ -0,0 +1,151 @@
+package eu.dnetlib.dhp.schema.common;
+
+import com.google.common.collect.Maps;
+import eu.dnetlib.dhp.schema.oaf.*;
+
+import java.util.Map;
+
+/**
+ * Oaf model utility methods.
+ */
+public class ModelSupport {
+
+    /**
+     * Defines the mapping between the actual entity type and the main entity type
+     */
+    private static Map<EntityType, MainEntityType> entityMapping = Maps.newHashMap();
+
+    static {
+        entityMapping.put(EntityType.publication,            MainEntityType.result);
+        entityMapping.put(EntityType.dataset,                MainEntityType.result);
+        entityMapping.put(EntityType.otherresearchproduct,   MainEntityType.result);
+        entityMapping.put(EntityType.software,               MainEntityType.result);
+        entityMapping.put(EntityType.datasource,             MainEntityType.datasource);
+        entityMapping.put(EntityType.organization,           MainEntityType.organization);
+        entityMapping.put(EntityType.project,                MainEntityType.project);
+    }
+
+    /**
+     * Defines the mapping between the actual entity types and the relative classes implementing them
+     */
+    public final static Map<EntityType, Class> entityTypes = Maps.newHashMap();
+
+    static {
+        entityTypes.put(EntityType.datasource, Datasource.class);
+        entityTypes.put(EntityType.organization, Organization.class);
+        entityTypes.put(EntityType.project, Project.class);
+        entityTypes.put(EntityType.dataset, Dataset.class);
+        entityTypes.put(EntityType.otherresearchproduct, OtherResearchProduct.class);
+        entityTypes.put(EntityType.software, Software.class);
+        entityTypes.put(EntityType.publication, Publication.class);
+    }
+
+    public final static Map<String, Class> oafTypes = Maps.newHashMap();
+
+    static {
+        oafTypes.put("datasource", Datasource.class);
+        oafTypes.put("organization", Organization.class);
+        oafTypes.put("project", Project.class);
+        oafTypes.put("dataset", Dataset.class);
+        oafTypes.put("otherresearchproduct", OtherResearchProduct.class);
+        oafTypes.put("software", Software.class);
+        oafTypes.put("publication", Publication.class);
+        oafTypes.put("relation", Relation.class);
+    }
+
+    private static final String schemeTemplate = "dnet:%s_%s_relations";
+
+    private ModelSupport() {
+    }
+
+    /**
+     * Checks subclass-superclass relationship.
+     *
+     * @param subClazzObject   Subclass object instance
+     * @param superClazzObject Superclass object instance
+     * @param <X>              Subclass type
+     * @param <Y>              Superclass type
+     * @return True if X is a subclass of Y
+     */
+    public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(X subClazzObject, Y superClazzObject) {
+        return isSubClass(subClazzObject.getClass(), superClazzObject.getClass());
+    }
+
+    /**
+     * Checks subclass-superclass relationship.
+     *
+     * @param subClazzObject Subclass object instance
+     * @param superClazz     Superclass class
+     * @param <X>            Subclass type
+     * @param <Y>            Superclass type
+     * @return True if X is a subclass of Y
+     */
+    public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(X subClazzObject, Class<Y> superClazz) {
+        return isSubClass(subClazzObject.getClass(), superClazz);
+    }
+
+    /**
+     * Checks subclass-superclass relationship.
+     *
+     * @param subClazz   Subclass class
+     * @param superClazz Superclass class
+     * @param <X>        Subclass type
+     * @param <Y>        Superclass type
+     * @return True if X is a subclass of Y
+     */
+    public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(Class<X> subClazz, Class<Y> superClazz) {
+        return superClazz.isAssignableFrom(subClazz);
+    }
+
+    /**
+     * Lists all the OAF model classes
+     *
+     * @param <T>
+     * @return
+     */
+    public static <T extends Oaf> Class<T>[] getOafModelClasses() {
+        return new Class[]{
+                Author.class,
+                Context.class,
+                Country.class,
+                DataInfo.class,
+                Dataset.class,
+                Datasource.class,
+                ExternalReference.class,
+                ExtraInfo.class,
+                Field.class,
+                GeoLocation.class,
+                Instance.class,
+                Journal.class,
+                KeyValue.class,
+                Oaf.class,
+                OafEntity.class,
+                OAIProvenance.class,
+                Organization.class,
+                OriginDescription.class,
+                OtherResearchProduct.class,
+                Project.class,
+                Publication.class,
+                Qualifier.class,
+                Relation.class,
+                Result.class,
+                Software.class,
+                StructuredProperty.class
+        };
+    }
+
+    public static String getMainType(final EntityType type) {
+        return entityMapping.get(type).name();
+    }
+
+    public static boolean isResult(EntityType type) {
+        return MainEntityType.result.name().equals(getMainType(type));
+    }
+
+    public static String getScheme(final String sourceType, final String targetType) {
+        return String.format(schemeTemplate,
+                entityMapping.get(EntityType.valueOf(sourceType)).name(),
+                entityMapping.get(EntityType.valueOf(targetType)).name());
+    }
+
+}

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Author.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Author implements Serializable {
 
@@ -64,4 +65,22 @@ public class Author implements Serializable {
     public void setAffiliation(List<Field<String>> affiliation) {
         this.affiliation = affiliation;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        Author author = (Author) o;
+        return Objects.equals(fullname, author.fullname) &&
+                Objects.equals(name, author.name) &&
+                Objects.equals(surname, author.surname) &&
+                Objects.equals(rank, author.rank) &&
+                Objects.equals(pid, author.pid) &&
+                Objects.equals(affiliation, author.affiliation);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(fullname, name, surname, rank, pid, affiliation);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Country.java

@@ -1,5 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
+import java.util.Objects;
+
 public class Country extends Qualifier {
 
     private DataInfo dataInfo;
@@ -12,4 +14,17 @@ public class Country extends Qualifier {
         this.dataInfo = dataInfo;
     }
 
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Country country = (Country) o;
+        return Objects.equals(dataInfo, country.dataInfo);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), dataInfo);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/DataInfo.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class DataInfo implements Serializable {
 
@@ -60,4 +61,22 @@ public class DataInfo implements Serializable {
     public void setProvenanceaction(Qualifier provenanceaction) {
         this.provenanceaction = provenanceaction;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        DataInfo dataInfo = (DataInfo) o;
+        return Objects.equals(invisible, dataInfo.invisible) &&
+                Objects.equals(inferred, dataInfo.inferred) &&
+                Objects.equals(deletedbyinference, dataInfo.deletedbyinference) &&
+                Objects.equals(trust, dataInfo.trust) &&
+                Objects.equals(inferenceprovenance, dataInfo.inferenceprovenance) &&
+                Objects.equals(provenanceaction, dataInfo.provenanceaction);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(invisible, inferred, deletedbyinference, trust, inferenceprovenance, provenanceaction);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Dataset.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Dataset extends Result implements Serializable {
 
@@ -78,6 +79,11 @@ public class Dataset extends Result implements Serializable {
     @Override
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
+
+        if (!Dataset.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         final Dataset d = (Dataset) e;
 
         storagedate = d.getStoragedate() != null && compareTrust(this, e)<0? d.getStoragedate() : storagedate;
@@ -96,4 +102,24 @@ public class Dataset extends Result implements Serializable {
 
         mergeOAFDataInfo(d);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Dataset dataset = (Dataset) o;
+        return Objects.equals(storagedate, dataset.storagedate) &&
+                Objects.equals(device, dataset.device) &&
+                Objects.equals(size, dataset.size) &&
+                Objects.equals(version, dataset.version) &&
+                Objects.equals(lastmetadataupdate, dataset.lastmetadataupdate) &&
+                Objects.equals(metadataversionnumber, dataset.metadataversionnumber) &&
+                Objects.equals(geolocation, dataset.geolocation);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), storagedate, device, size, version, lastmetadataupdate, metadataversionnumber, geolocation);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Datasource.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Datasource extends OafEntity implements Serializable {
 
@@ -366,6 +367,10 @@ public class Datasource extends OafEntity implements Serializable {
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
 
+        if (!Datasource.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         Datasource d = (Datasource)e;
 
         datasourcetype = d.getDatasourcetype() != null && compareTrust(this, e)<0? d.getDatasourcetype() : datasourcetype;
@@ -424,4 +429,52 @@ public class Datasource extends OafEntity implements Serializable {
 
         mergeOAFDataInfo(e);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Datasource that = (Datasource) o;
+        return Objects.equals(datasourcetype, that.datasourcetype) &&
+                Objects.equals(openairecompatibility, that.openairecompatibility) &&
+                Objects.equals(officialname, that.officialname) &&
+                Objects.equals(englishname, that.englishname) &&
+                Objects.equals(websiteurl, that.websiteurl) &&
+                Objects.equals(logourl, that.logourl) &&
+                Objects.equals(contactemail, that.contactemail) &&
+                Objects.equals(namespaceprefix, that.namespaceprefix) &&
+                Objects.equals(latitude, that.latitude) &&
+                Objects.equals(longitude, that.longitude) &&
+                Objects.equals(dateofvalidation, that.dateofvalidation) &&
+                Objects.equals(description, that.description) &&
+                Objects.equals(subjects, that.subjects) &&
+                Objects.equals(odnumberofitems, that.odnumberofitems) &&
+                Objects.equals(odnumberofitemsdate, that.odnumberofitemsdate) &&
+                Objects.equals(odpolicies, that.odpolicies) &&
+                Objects.equals(odlanguages, that.odlanguages) &&
+                Objects.equals(odcontenttypes, that.odcontenttypes) &&
+                Objects.equals(accessinfopackage, that.accessinfopackage) &&
+                Objects.equals(releasestartdate, that.releasestartdate) &&
+                Objects.equals(releaseenddate, that.releaseenddate) &&
+                Objects.equals(missionstatementurl, that.missionstatementurl) &&
+                Objects.equals(dataprovider, that.dataprovider) &&
+                Objects.equals(serviceprovider, that.serviceprovider) &&
+                Objects.equals(databaseaccesstype, that.databaseaccesstype) &&
+                Objects.equals(datauploadtype, that.datauploadtype) &&
+                Objects.equals(databaseaccessrestriction, that.databaseaccessrestriction) &&
+                Objects.equals(datauploadrestriction, that.datauploadrestriction) &&
+                Objects.equals(versioning, that.versioning) &&
+                Objects.equals(citationguidelineurl, that.citationguidelineurl) &&
+                Objects.equals(qualitymanagementkind, that.qualitymanagementkind) &&
+                Objects.equals(pidsystems, that.pidsystems) &&
+                Objects.equals(certificates, that.certificates) &&
+                Objects.equals(policies, that.policies) &&
+                Objects.equals(journal, that.journal);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), datasourcetype, openairecompatibility, officialname, englishname, websiteurl, logourl, contactemail, namespaceprefix, latitude, longitude, dateofvalidation, description, subjects, odnumberofitems, odnumberofitemsdate, odpolicies, odlanguages, odcontenttypes, accessinfopackage, releasestartdate, releaseenddate, missionstatementurl, dataprovider, serviceprovider, databaseaccesstype, datauploadtype, databaseaccessrestriction, datauploadrestriction, versioning, citationguidelineurl, qualitymanagementkind, pidsystems, certificates, policies, journal);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/ExternalReference.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class ExternalReference implements Serializable {
     // source
@@ -90,4 +91,24 @@ public class ExternalReference implements Serializable {
     public void setDataInfo(DataInfo dataInfo) {
         this.dataInfo = dataInfo;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        ExternalReference that = (ExternalReference) o;
+        return Objects.equals(sitename, that.sitename) &&
+                Objects.equals(label, that.label) &&
+                Objects.equals(url, that.url) &&
+                Objects.equals(description, that.description) &&
+                Objects.equals(qualifier, that.qualifier) &&
+                Objects.equals(refidentifier, that.refidentifier) &&
+                Objects.equals(query, that.query) &&
+                Objects.equals(dataInfo, that.dataInfo);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(sitename, label, url, description, qualifier, refidentifier, query, dataInfo);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/ExtraInfo.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class ExtraInfo implements Serializable {
     private String name;
@@ -53,4 +54,21 @@ public class ExtraInfo implements Serializable {
     public void setValue(String value) {
         this.value = value;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        ExtraInfo extraInfo = (ExtraInfo) o;
+        return Objects.equals(name, extraInfo.name) &&
+                Objects.equals(typology, extraInfo.typology) &&
+                Objects.equals(provenance, extraInfo.provenance) &&
+                Objects.equals(trust, extraInfo.trust) &&
+                Objects.equals(value, extraInfo.value);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(name, typology, provenance, trust, value);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Journal.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class Journal implements Serializable {
 
@@ -123,4 +124,28 @@ public class Journal implements Serializable {
     public void setDataInfo(DataInfo dataInfo) {
         this.dataInfo = dataInfo;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        Journal journal = (Journal) o;
+        return Objects.equals(name, journal.name) &&
+                Objects.equals(issnPrinted, journal.issnPrinted) &&
+                Objects.equals(issnOnline, journal.issnOnline) &&
+                Objects.equals(issnLinking, journal.issnLinking) &&
+                Objects.equals(ep, journal.ep) &&
+                Objects.equals(iss, journal.iss) &&
+                Objects.equals(sp, journal.sp) &&
+                Objects.equals(vol, journal.vol) &&
+                Objects.equals(edition, journal.edition) &&
+                Objects.equals(conferenceplace, journal.conferenceplace) &&
+                Objects.equals(conferencedate, journal.conferencedate) &&
+                Objects.equals(dataInfo, journal.dataInfo);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(name, issnPrinted, issnOnline, issnLinking, ep, iss, sp, vol, edition, conferenceplace, conferencedate, dataInfo);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OAIProvenance.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class OAIProvenance  implements Serializable {
 
@@ -13,4 +14,17 @@ public class OAIProvenance  implements Serializable {
     public void setOriginDescription(OriginDescription originDescription) {
         this.originDescription = originDescription;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        OAIProvenance that = (OAIProvenance) o;
+        return Objects.equals(originDescription, that.originDescription);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(originDescription);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Oaf.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public abstract class Oaf implements Serializable {
     
@@ -43,4 +44,18 @@ public abstract class Oaf implements Serializable {
         return extractTrust(a).compareTo(extractTrust(b));
 
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        Oaf oaf = (Oaf) o;
+        return Objects.equals(dataInfo, oaf.dataInfo) &&
+                Objects.equals(lastupdatetimestamp, oaf.lastupdatetimestamp);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(dataInfo, lastupdatetimestamp);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OafEntity.java

@@ -116,5 +116,24 @@ public abstract class OafEntity extends Oaf implements Serializable {
         return Arrays.stream(lists).filter(Objects::nonNull).flatMap(List::stream).distinct().collect(Collectors.toList());
     }
 
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        OafEntity oafEntity = (OafEntity) o;
+        return Objects.equals(id, oafEntity.id) &&
+                Objects.equals(originalId, oafEntity.originalId) &&
+                Objects.equals(collectedfrom, oafEntity.collectedfrom) &&
+                Objects.equals(pid, oafEntity.pid) &&
+                Objects.equals(dateofcollection, oafEntity.dateofcollection) &&
+                Objects.equals(dateoftransformation, oafEntity.dateoftransformation) &&
+                Objects.equals(extraInfo, oafEntity.extraInfo) &&
+                Objects.equals(oaiprovenance, oafEntity.oaiprovenance);
+    }
 
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), id, originalId, collectedfrom, pid, dateofcollection, dateoftransformation, extraInfo, oaiprovenance);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Organization.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Organization extends OafEntity implements Serializable {
 
@@ -169,6 +170,11 @@ public class Organization extends OafEntity implements Serializable {
     @Override
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
+
+        if (!Organization.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         final Organization o = (Organization) e;
         legalshortname = o.getLegalshortname() != null && compareTrust(this, e)<0? o.getLegalshortname() : legalshortname;
         legalname = o.getLegalname() != null && compareTrust(this, e)<0 ? o.getLegalname() : legalname;
@@ -188,4 +194,33 @@ public class Organization extends OafEntity implements Serializable {
         country = o.getCountry() != null && compareTrust(this, e)<0 ? o.getCountry() :country;
         mergeOAFDataInfo(o);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Organization that = (Organization) o;
+        return Objects.equals(legalshortname, that.legalshortname) &&
+                Objects.equals(legalname, that.legalname) &&
+                Objects.equals(alternativeNames, that.alternativeNames) &&
+                Objects.equals(websiteurl, that.websiteurl) &&
+                Objects.equals(logourl, that.logourl) &&
+                Objects.equals(eclegalbody, that.eclegalbody) &&
+                Objects.equals(eclegalperson, that.eclegalperson) &&
+                Objects.equals(ecnonprofit, that.ecnonprofit) &&
+                Objects.equals(ecresearchorganization, that.ecresearchorganization) &&
+                Objects.equals(echighereducation, that.echighereducation) &&
+                Objects.equals(ecinternationalorganizationeurinterests, that.ecinternationalorganizationeurinterests) &&
+                Objects.equals(ecinternationalorganization, that.ecinternationalorganization) &&
+                Objects.equals(ecenterprise, that.ecenterprise) &&
+                Objects.equals(ecsmevalidated, that.ecsmevalidated) &&
+                Objects.equals(ecnutscode, that.ecnutscode) &&
+                Objects.equals(country, that.country);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), legalshortname, legalname, alternativeNames, websiteurl, logourl, eclegalbody, eclegalperson, ecnonprofit, ecresearchorganization, echighereducation, ecinternationalorganizationeurinterests, ecinternationalorganization, ecenterprise, ecsmevalidated, ecnutscode, country);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OriginDescription.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class OriginDescription implements Serializable {
 
@@ -63,4 +64,22 @@ public class OriginDescription implements Serializable {
     public void setMetadataNamespace(String metadataNamespace) {
         this.metadataNamespace = metadataNamespace;
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        OriginDescription that = (OriginDescription) o;
+        return Objects.equals(harvestDate, that.harvestDate) &&
+                Objects.equals(altered, that.altered) &&
+                Objects.equals(baseURL, that.baseURL) &&
+                Objects.equals(identifier, that.identifier) &&
+                Objects.equals(datestamp, that.datestamp) &&
+                Objects.equals(metadataNamespace, that.metadataNamespace);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(harvestDate, altered, baseURL, identifier, datestamp, metadataNamespace);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/OtherResearchProduct.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class OtherResearchProduct extends Result implements Serializable {
 
@@ -39,6 +40,10 @@ public class OtherResearchProduct extends Result implements Serializable {
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
 
+        if (!OtherResearchProduct.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         OtherResearchProduct o = (OtherResearchProduct)e;
 
         contactperson = mergeLists(contactperson, o.getContactperson());
@@ -46,4 +51,20 @@ public class OtherResearchProduct extends Result implements Serializable {
         tool = mergeLists(tool, o.getTool());
         mergeOAFDataInfo(e);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        OtherResearchProduct that = (OtherResearchProduct) o;
+        return Objects.equals(contactperson, that.contactperson) &&
+                Objects.equals(contactgroup, that.contactgroup) &&
+                Objects.equals(tool, that.tool);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), contactperson, contactgroup, tool);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Project.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Project extends OafEntity implements Serializable {
 
@@ -269,6 +270,11 @@ public class Project extends OafEntity implements Serializable {
     @Override
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
+
+        if (!Project.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         Project p = (Project)e;
 
             websiteurl= p.getWebsiteurl()!= null && compareTrust(this,e)<0?p.getWebsiteurl():websiteurl;
@@ -299,4 +305,43 @@ public class Project extends OafEntity implements Serializable {
             fundedamount= p.getFundedamount()!= null && compareTrust(this,e)<0?p.getFundedamount():fundedamount;
             mergeOAFDataInfo(e);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Project project = (Project) o;
+        return Objects.equals(websiteurl, project.websiteurl) &&
+                Objects.equals(code, project.code) &&
+                Objects.equals(acronym, project.acronym) &&
+                Objects.equals(title, project.title) &&
+                Objects.equals(startdate, project.startdate) &&
+                Objects.equals(enddate, project.enddate) &&
+                Objects.equals(callidentifier, project.callidentifier) &&
+                Objects.equals(keywords, project.keywords) &&
+                Objects.equals(duration, project.duration) &&
+                Objects.equals(ecsc39, project.ecsc39) &&
+                Objects.equals(oamandatepublications, project.oamandatepublications) &&
+                Objects.equals(ecarticle29_3, project.ecarticle29_3) &&
+                Objects.equals(subjects, project.subjects) &&
+                Objects.equals(fundingtree, project.fundingtree) &&
+                Objects.equals(contracttype, project.contracttype) &&
+                Objects.equals(optional1, project.optional1) &&
+                Objects.equals(optional2, project.optional2) &&
+                Objects.equals(jsonextrainfo, project.jsonextrainfo) &&
+                Objects.equals(contactfullname, project.contactfullname) &&
+                Objects.equals(contactfax, project.contactfax) &&
+                Objects.equals(contactphone, project.contactphone) &&
+                Objects.equals(contactemail, project.contactemail) &&
+                Objects.equals(summary, project.summary) &&
+                Objects.equals(currency, project.currency) &&
+                Objects.equals(totalcost, project.totalcost) &&
+                Objects.equals(fundedamount, project.fundedamount);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), websiteurl, code, acronym, title, startdate, enddate, callidentifier, keywords, duration, ecsc39, oamandatepublications, ecarticle29_3, subjects, fundingtree, contracttype, optional1, optional2, jsonextrainfo, contactfullname, contactfax, contactphone, contactemail, summary, currency, totalcost, fundedamount);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Publication.java

@@ -1,6 +1,7 @@
 package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
+import java.util.Objects;
 
 public class Publication extends Result implements Serializable {
 
@@ -19,6 +20,10 @@ public class Publication extends Result implements Serializable {
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
 
+        if (!Publication.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         Publication p = (Publication) e;
 
         if (p.getJournal() != null && compareTrust(this, e)<0)
@@ -26,5 +31,17 @@ public class Publication extends Result implements Serializable {
         mergeOAFDataInfo(e);
     }
 
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Publication that = (Publication) o;
+        return Objects.equals(journal, that.journal);
+    }
 
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), journal);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java

@@ -1,8 +1,6 @@
 package eu.dnetlib.dhp.schema.oaf;
 
-import java.util.ArrayList;
+import java.util.*;
-import java.util.List;
-import java.util.Objects;
 import java.util.stream.Collectors;
 import java.util.stream.Stream;
 
@@ -78,9 +76,12 @@ public class Relation extends Oaf {
 		checkArgument(Objects.equals(getSubRelType(), r.getSubRelType()),"subRelType(s) must be equal");
 		checkArgument(Objects.equals(getRelClass(), r.getRelClass()),"relClass(es) must be equal");
 
-		setCollectedFrom(Stream.concat(getCollectedFrom().stream(), r.getCollectedFrom().stream())
+		setCollectedFrom(
-				.distinct() // relies on KeyValue.equals
+				Stream
-				.collect(Collectors.toList()));
+						.concat(Optional.ofNullable(getCollectedFrom()).map(Collection::stream).orElse(Stream.empty()),
+								Optional.ofNullable(r.getCollectedFrom()).map(Collection::stream).orElse(Stream.empty()))
+						.distinct() // relies on KeyValue.equals
+						.collect(Collectors.toList()));
 	}
 
 	@Override
@@ -92,8 +93,7 @@ public class Relation extends Oaf {
 				subRelType.equals(relation.subRelType) &&
 				relClass.equals(relation.relClass) &&
 				source.equals(relation.source) &&
-				target.equals(relation.target) &&
+				target.equals(relation.target);
-				Objects.equals(collectedFrom, relation.collectedFrom);
 	}
 
 	@Override

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java

@@ -3,6 +3,7 @@ package eu.dnetlib.dhp.schema.oaf;
 import java.io.Serializable;
 import java.util.Comparator;
 import java.util.List;
+import java.util.Objects;
 
 public class Result extends OafEntity implements Serializable {
 
@@ -222,6 +223,10 @@ public class Result extends OafEntity implements Serializable {
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
 
+        if (!Result.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         Result r = (Result) e;
 
         instance = mergeLists(instance, r.getInstance());
@@ -278,4 +283,37 @@ public class Result extends OafEntity implements Serializable {
         return a.size() > b.size() ? a : b;
     }
 
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Result result = (Result) o;
+        return Objects.equals(author, result.author) &&
+                Objects.equals(resulttype, result.resulttype) &&
+                Objects.equals(language, result.language) &&
+                Objects.equals(country, result.country) &&
+                Objects.equals(subject, result.subject) &&
+                Objects.equals(title, result.title) &&
+                Objects.equals(relevantdate, result.relevantdate) &&
+                Objects.equals(description, result.description) &&
+                Objects.equals(dateofacceptance, result.dateofacceptance) &&
+                Objects.equals(publisher, result.publisher) &&
+                Objects.equals(embargoenddate, result.embargoenddate) &&
+                Objects.equals(source, result.source) &&
+                Objects.equals(fulltext, result.fulltext) &&
+                Objects.equals(format, result.format) &&
+                Objects.equals(contributor, result.contributor) &&
+                Objects.equals(resourcetype, result.resourcetype) &&
+                Objects.equals(coverage, result.coverage) &&
+                Objects.equals(bestaccessright, result.bestaccessright) &&
+                Objects.equals(context, result.context) &&
+                Objects.equals(externalReference, result.externalReference) &&
+                Objects.equals(instance, result.instance);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), author, resulttype, language, country, subject, title, relevantdate, description, dateofacceptance, publisher, embargoenddate, source, fulltext, format, contributor, resourcetype, coverage, bestaccessright, context, externalReference, instance);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Software.java

@@ -2,6 +2,7 @@ package eu.dnetlib.dhp.schema.oaf;
 
 import java.io.Serializable;
 import java.util.List;
+import java.util.Objects;
 
 public class Software extends Result implements Serializable {
 
@@ -48,6 +49,11 @@ public class Software extends Result implements Serializable {
     @Override
     public void mergeFrom(OafEntity e) {
         super.mergeFrom(e);
+
+        if (!Software.class.isAssignableFrom(e.getClass())){
+            return;
+        }
+
         final Software s = (Software) e;
         documentationUrl = mergeLists(documentationUrl, s.getDocumentationUrl());
 
@@ -59,4 +65,21 @@ public class Software extends Result implements Serializable {
 
         mergeOAFDataInfo(e);
     }
+
+    @Override
+    public boolean equals(Object o) {
+        if (this == o) return true;
+        if (o == null || getClass() != o.getClass()) return false;
+        if (!super.equals(o)) return false;
+        Software software = (Software) o;
+        return Objects.equals(documentationUrl, software.documentationUrl) &&
+                Objects.equals(license, software.license) &&
+                Objects.equals(codeRepositoryUrl, software.codeRepositoryUrl) &&
+                Objects.equals(programmingLanguage, software.programmingLanguage);
+    }
+
+    @Override
+    public int hashCode() {
+        return Objects.hash(super.hashCode(), documentationUrl, license, codeRepositoryUrl, programmingLanguage);
+    }
 }

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/scholexplorer/DLIRelation.java

@@ -0,0 +1,15 @@
+package eu.dnetlib.dhp.schema.scholexplorer;
+
+import eu.dnetlib.dhp.schema.oaf.Relation;
+
+public class DLIRelation extends Relation {
+    private String dateOfCollection;
+
+    public String getDateOfCollection() {
+        return dateOfCollection;
+    }
+
+    public void setDateOfCollection(String dateOfCollection) {
+        this.dateOfCollection = dateOfCollection;
+    }
+}

dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/common/ModelSupportTest.java

@@ -0,0 +1,35 @@
+package eu.dnetlib.dhp.schema.common;
+
+import eu.dnetlib.dhp.schema.oaf.OafEntity;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import eu.dnetlib.dhp.schema.oaf.Result;
+import org.junit.jupiter.api.Nested;
+import org.junit.jupiter.api.Test;
+
+import static org.junit.jupiter.api.Assertions.assertFalse;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+
+public class ModelSupportTest {
+
+    @Nested
+    class IsSubClass {
+
+        @Test
+        public void shouldReturnFalseWhenSubClassDoesNotExtendSuperClass() {
+            // when
+            Boolean result = ModelSupport.isSubClass(Relation.class, OafEntity.class);
+
+            // then
+            assertFalse(result);
+        }
+
+        @Test
+        public void shouldReturnTrueWhenSubClassExtendsSuperClass() {
+            // when
+            Boolean result = ModelSupport.isSubClass(Result.class, OafEntity.class);
+
+            // then
+            assertTrue(result);
+        }
+    }
+}

dhp-workflows/dhp-actionmanager/pom.xml

@@ -0,0 +1,62 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <parent>
+        <groupId>eu.dnetlib.dhp</groupId>
+        <artifactId>dhp-workflows</artifactId>
+        <version>1.1.7-SNAPSHOT</version>
+    </parent>
+    <artifactId>dhp-actionmanager</artifactId>
+
+    <dependencies>
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-core_2.11</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-sql_2.11</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>eu.dnetlib.dhp</groupId>
+            <artifactId>dhp-common</artifactId>
+            <version>${project.version}</version>
+            <exclusions>
+                <exclusion>
+                    <groupId>net.sf.saxon</groupId>
+                    <artifactId>Saxon-HE</artifactId>
+                </exclusion>
+            </exclusions>
+        </dependency>
+
+        <dependency>
+            <groupId>dom4j</groupId>
+            <artifactId>dom4j</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>xml-apis</groupId>
+            <artifactId>xml-apis</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>jaxen</groupId>
+            <artifactId>jaxen</artifactId>
+        </dependency>
+
+        <dependency>
+            <groupId>eu.dnetlib.dhp</groupId>
+            <artifactId>dhp-schemas</artifactId>
+            <version>${project.version}</version>
+        </dependency>
+
+        <dependency>
+            <groupId>eu.dnetlib</groupId>
+            <artifactId>dnet-actionmanager-api</artifactId>
+        </dependency>
+
+    </dependencies>
+</project>

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/ISClient.java

@@ -0,0 +1,126 @@
+package eu.dnetlib.dhp.actionmanager;
+
+import com.google.common.base.Splitter;
+import com.google.common.collect.Iterables;
+import com.google.common.collect.Lists;
+import eu.dnetlib.actionmanager.rmi.ActionManagerException;
+import eu.dnetlib.actionmanager.set.ActionManagerSet;
+import eu.dnetlib.actionmanager.set.ActionManagerSet.ImpactTypes;
+import eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJob;
+import eu.dnetlib.dhp.utils.ISLookupClientFactory;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import org.dom4j.Document;
+import org.dom4j.Element;
+import org.dom4j.io.SAXReader;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.io.Serializable;
+import java.io.StringReader;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.NoSuchElementException;
+import java.util.stream.Collectors;
+
+public class ISClient implements Serializable {
+
+	private static final Logger log = LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
+
+	private static final String INPUT_ACTION_SET_ID_SEPARATOR = ",";
+
+	private ISLookUpService isLookup;
+
+	public ISClient(String isLookupUrl) {
+		isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
+	}
+
+	public List<String> getLatestRawsetPaths(String setIds) {
+
+		List<String> ids = Lists.newArrayList(Splitter.on(INPUT_ACTION_SET_ID_SEPARATOR)
+				.omitEmptyStrings()
+				.trimResults()
+				.split(setIds));
+
+		return ids.stream()
+				.map(id -> getSet(isLookup, id))
+				.map(as -> as.getPathToLatest())
+				.collect(Collectors.toCollection(ArrayList::new));
+	}
+
+	private ActionManagerSet getSet(ISLookUpService isLookup, final String setId) {
+
+		final String q = "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') "
+				+ "where $x//SET/@id = '" + setId + "' return $x";
+
+		try {
+			final String basePath = getBasePathHDFS(isLookup);
+			final String setProfile = isLookup.getResourceProfileByQuery(q);
+			return getActionManagerSet(basePath, setProfile);
+		} catch (ISLookUpException | ActionManagerException e) {
+			throw new RuntimeException("Error accessing Sets, using query: " + q);
+		}
+	}
+
+	private ActionManagerSet getActionManagerSet(final String basePath, final String profile) throws ActionManagerException {
+		final SAXReader reader = new SAXReader();
+		final ActionManagerSet set = new ActionManagerSet();
+
+		try {
+			final Document doc = reader.read(new StringReader(profile));
+
+			set.setId(doc.valueOf("//SET/@id").trim());
+			set.setName(doc.valueOf("//SET").trim());
+			set.setImpact(ImpactTypes.valueOf(doc.valueOf("//IMPACT").trim()));
+			set.setLatest(doc.valueOf("//RAW_SETS/LATEST/@id"), doc.valueOf("//RAW_SETS/LATEST/@creationDate"), doc.valueOf("//RAW_SETS/LATEST/@lastUpdate"));
+			set.setDirectory(doc.valueOf("//SET/@directory"));
+			final List expiredNodes = doc.selectNodes("//RAW_SETS/EXPIRED");
+			if (expiredNodes != null) {
+				for (int i = 0; i < expiredNodes.size(); i++) {
+					Element ex = (Element) expiredNodes.get(i);
+					set.addExpired(ex.attributeValue("id"), ex.attributeValue("creationDate"), ex.attributeValue("lastUpdate"));
+				}
+			}
+
+			final StringBuilder sb = new StringBuilder();
+			sb.append(basePath);
+			sb.append("/");
+			sb.append(doc.valueOf("//SET/@directory"));
+			sb.append("/");
+			sb.append(doc.valueOf("//RAW_SETS/LATEST/@id"));
+			set.setPathToLatest(sb.toString());
+
+			return set;
+		} catch (Exception e) {
+			throw new ActionManagerException("Error creating set from profile: " + profile, e);
+		}
+	}
+
+	private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
+		return queryServiceProperty(isLookup, "basePath");
+	}
+
+	private String queryServiceProperty(ISLookUpService isLookup, final String propertyName) throws ActionManagerException {
+		final String q = "for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='ActionManagerServiceResourceType'] return $x//SERVICE_PROPERTIES/PROPERTY[./@ key='"
+				+ propertyName + "']/@value/string()";
+		log.debug("quering for service property: " + q);
+		try {
+			final List<String> value = isLookup.quickSearchProfile(q);
+			return Iterables.getOnlyElement(value);
+		} catch (ISLookUpException e) {
+			String msg = "Error accessing service profile, using query: " + q;
+			log.error(msg, e);
+			throw new ActionManagerException(msg, e);
+		} catch (NoSuchElementException e) {
+			String msg = "missing service property: " + propertyName;
+			log.error(msg, e);
+			throw new ActionManagerException(msg, e);
+		} catch (IllegalArgumentException e) {
+			String msg = "found more than one service property: " + propertyName;
+			log.error(msg, e);
+			throw new ActionManagerException(msg, e);
+		}
+	}
+
+
+}

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/partition/PartitionActionSetsByPayloadTypeJob.java

@@ -0,0 +1,140 @@
+package eu.dnetlib.dhp.actionmanager.partition;
+
+import eu.dnetlib.dhp.actionmanager.ISClient;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import org.apache.commons.io.IOUtils;
+import org.apache.hadoop.io.Text;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.sql.*;
+import org.apache.spark.sql.types.*;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Arrays;
+import java.util.Collections;
+import java.util.List;
+import java.util.Optional;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+import static org.apache.spark.sql.functions.*;
+
+/**
+ * Partitions given set of action sets by payload type.
+ */
+public class PartitionActionSetsByPayloadTypeJob {
+
+    private static final Logger logger = LoggerFactory.getLogger(PartitionActionSetsByPayloadTypeJob.class);
+
+    private static final StructType KV_SCHEMA = StructType$.MODULE$.apply(
+            Arrays.asList(
+                    StructField$.MODULE$.apply("key", DataTypes.StringType, false, Metadata.empty()),
+                    StructField$.MODULE$.apply("value", DataTypes.StringType, false, Metadata.empty())
+            ));
+
+    private static final StructType ATOMIC_ACTION_SCHEMA = StructType$.MODULE$.apply(
+            Arrays.asList(
+                    StructField$.MODULE$.apply("clazz", DataTypes.StringType, false, Metadata.empty()),
+                    StructField$.MODULE$.apply("payload", DataTypes.StringType, false, Metadata.empty())
+            ));
+
+    private ISClient isClient;
+
+    public PartitionActionSetsByPayloadTypeJob(String isLookupUrl) {
+        this.isClient = new ISClient(isLookupUrl);
+    }
+
+    public PartitionActionSetsByPayloadTypeJob() {
+    }
+
+    public static void main(String[] args) throws Exception {
+        String jsonConfiguration = IOUtils.toString(
+                PromoteActionPayloadForGraphTableJob.class
+                        .getResourceAsStream("/eu/dnetlib/dhp/actionmanager/partition/partition_action_sets_by_payload_type_input_parameters.json"));
+        final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+        parser.parseArgument(args);
+
+        Boolean isSparkSessionManaged = Optional
+                .ofNullable(parser.get("isSparkSessionManaged"))
+                .map(Boolean::valueOf)
+                .orElse(Boolean.TRUE);
+        logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+        String inputActionSetIds = parser.get("inputActionSetIds");
+        logger.info("inputActionSetIds: {}", inputActionSetIds);
+
+        String outputPath = parser.get("outputPath");
+        logger.info("outputPath: {}", outputPath);
+
+        String isLookupUrl = parser.get("isLookupUrl");
+        logger.info("isLookupUrl: {}", isLookupUrl);
+
+        new PartitionActionSetsByPayloadTypeJob(isLookupUrl).run(isSparkSessionManaged, inputActionSetIds, outputPath);
+    }
+
+    protected void run(Boolean isSparkSessionManaged, String inputActionSetIds, String outputPath) {
+
+        List<String> inputActionSetPaths = getIsClient().getLatestRawsetPaths(inputActionSetIds);
+        logger.info("inputActionSetPaths: {}", String.join(",", inputActionSetPaths));
+
+        SparkConf conf = new SparkConf();
+        conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+
+        runWithSparkSession(conf, isSparkSessionManaged,
+                spark -> {
+                    removeOutputDir(spark, outputPath);
+                    readAndWriteActionSetsFromPaths(spark, inputActionSetPaths, outputPath);
+                });
+    }
+
+    private static void removeOutputDir(SparkSession spark,
+                                        String path) {
+        HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+    }
+
+    private static void readAndWriteActionSetsFromPaths(SparkSession spark,
+                                                        List<String> inputActionSetPaths,
+                                                        String outputPath) {
+        inputActionSetPaths
+                .forEach(inputActionSetPath -> {
+                    Dataset<Row> actionDS = readActionSetFromPath(spark, inputActionSetPath);
+                    saveActions(actionDS, outputPath);
+                });
+    }
+
+    private static Dataset<Row> readActionSetFromPath(SparkSession spark,
+                                                      String path) {
+        logger.info("Reading actions from path: {}", path);
+
+        JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+        JavaRDD<Row> rdd = sc
+                .sequenceFile(path, Text.class, Text.class)
+                .map(x -> RowFactory.create(x._1().toString(), x._2().toString()));
+
+        return spark.createDataFrame(rdd, KV_SCHEMA)
+                .withColumn("atomic_action", from_json(col("value"), ATOMIC_ACTION_SCHEMA))
+                .select(expr("atomic_action.*"));
+    }
+
+    private static void saveActions(Dataset<Row> actionDS,
+                                    String path) {
+        logger.info("Saving actions to path: {}", path);
+        actionDS
+                .write()
+                .partitionBy("clazz")
+                .mode(SaveMode.Append)
+                .parquet(path);
+    }
+
+    public ISClient getIsClient() {
+        return isClient;
+    }
+
+    public void setIsClient(ISClient isClient) {
+        this.isClient = isClient;
+    }
+}

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGet.java

@@ -0,0 +1,74 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+import eu.dnetlib.dhp.schema.oaf.OafEntity;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+
+import java.util.function.BiFunction;
+
+import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
+
+/**
+ * OAF model merging support.
+ */
+public class MergeAndGet {
+
+    private MergeAndGet() {
+    }
+
+    /**
+     * Strategy for merging OAF model objects.
+     * <p>
+     * MERGE_FROM_AND_GET: use OAF 'mergeFrom' method
+     * SELECT_NEWER_AND_GET: use last update timestamp to return newer instance
+     */
+    public enum Strategy {
+        MERGE_FROM_AND_GET, SELECT_NEWER_AND_GET
+    }
+
+    /**
+     * Returns a function for merging OAF model objects.
+     *
+     * @param strategy Strategy to be used to merge objects
+     * @param <G>      Graph table type
+     * @param <A>      Action payload type
+     * @return BiFunction to be used to merge OAF objects
+     */
+    public static <G extends Oaf, A extends Oaf> SerializableSupplier<BiFunction<G, A, G>> functionFor(Strategy strategy) {
+        switch (strategy) {
+            case MERGE_FROM_AND_GET:
+                return () -> MergeAndGet::mergeFromAndGet;
+            case SELECT_NEWER_AND_GET:
+                return () -> MergeAndGet::selectNewerAndGet;
+        }
+        throw new RuntimeException();
+    }
+
+    private static <G extends Oaf, A extends Oaf> G mergeFromAndGet(G x, A y) {
+        if (isSubClass(x, Relation.class) && isSubClass(y, Relation.class)) {
+            ((Relation) x).mergeFrom((Relation) y);
+            return x;
+        } else if (isSubClass(x, OafEntity.class) && isSubClass(y, OafEntity.class) && isSubClass(x, y)) {
+            ((OafEntity) x).mergeFrom((OafEntity) y);
+            return x;
+        }
+        throw new RuntimeException(String.format("MERGE_FROM_AND_GET incompatible types: %s, %s",
+                x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
+    }
+
+    private static <G extends Oaf, A extends Oaf> G selectNewerAndGet(G x, A y) {
+        if (x.getClass().equals(y.getClass()) && x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
+            return x;
+        } else if (x.getClass().equals(y.getClass()) && x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
+            return (G) y;
+        } else if (isSubClass(x, y) && x.getLastupdatetimestamp() > y.getLastupdatetimestamp()) {
+            return x;
+        } else if (isSubClass(x, y) && x.getLastupdatetimestamp() < y.getLastupdatetimestamp()) {
+            throw new RuntimeException(String.format("SELECT_NEWER_AND_GET cannot return right type when it is not the same as left type: %s, %s",
+                    x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
+        }
+        throw new RuntimeException(String.format("SELECT_NEWER_AND_GET cannot be used when left is not subtype of right: %s, %s",
+                x.getClass().getCanonicalName(), y.getClass().getCanonicalName()));
+    }
+}

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadForGraphTableJob.java

@@ -0,0 +1,254 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.Row;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Objects;
+import java.util.Optional;
+import java.util.function.BiFunction;
+import java.util.function.Function;
+
+import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+/**
+ * Applies a given action payload file to graph table of compatible type.
+ */
+public class PromoteActionPayloadForGraphTableJob {
+    private static final Logger logger = LoggerFactory.getLogger(PromoteActionPayloadForGraphTableJob.class);
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+    public static void main(String[] args) throws Exception {
+        String jsonConfiguration = IOUtils.toString(
+                PromoteActionPayloadForGraphTableJob.class
+                        .getResourceAsStream("/eu/dnetlib/dhp/actionmanager/promote/promote_action_payload_for_graph_table_input_parameters.json"));
+        final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+        parser.parseArgument(args);
+
+        Boolean isSparkSessionManaged = Optional
+                .ofNullable(parser.get("isSparkSessionManaged"))
+                .map(Boolean::valueOf)
+                .orElse(Boolean.TRUE);
+        logger.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+        String inputGraphTablePath = parser.get("inputGraphTablePath");
+        logger.info("inputGraphTablePath: {}", inputGraphTablePath);
+
+        String graphTableClassName = parser.get("graphTableClassName");
+        logger.info("graphTableClassName: {}", graphTableClassName);
+
+        String inputActionPayloadPath = parser.get("inputActionPayloadPath");
+        logger.info("inputActionPayloadPath: {}", inputActionPayloadPath);
+
+        String actionPayloadClassName = parser.get("actionPayloadClassName");
+        logger.info("actionPayloadClassName: {}", actionPayloadClassName);
+
+        String outputGraphTablePath = parser.get("outputGraphTablePath");
+        logger.info("outputGraphTablePath: {}", outputGraphTablePath);
+
+        MergeAndGet.Strategy strategy = MergeAndGet.Strategy.valueOf(parser.get("mergeAndGetStrategy").toUpperCase());
+        logger.info("strategy: {}", strategy);
+
+        Class<? extends Oaf> rowClazz = (Class<? extends Oaf>) Class.forName(graphTableClassName);
+        Class<? extends Oaf> actionPayloadClazz = (Class<? extends Oaf>) Class.forName(actionPayloadClassName);
+
+        throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(rowClazz, actionPayloadClazz);
+
+        SparkConf conf = new SparkConf();
+        conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+        conf.registerKryoClasses(ModelSupport.getOafModelClasses());
+
+        runWithSparkSession(conf, isSparkSessionManaged,
+                spark -> {
+                    removeOutputDir(spark, outputGraphTablePath);
+                    promoteActionPayloadForGraphTable(spark,
+                            inputGraphTablePath,
+                            inputActionPayloadPath,
+                            outputGraphTablePath,
+                            strategy,
+                            rowClazz,
+                            actionPayloadClazz);
+                });
+    }
+
+    private static void throwIfGraphTableClassIsNotSubClassOfActionPayloadClass(Class<? extends Oaf> rowClazz,
+                                                                                Class<? extends Oaf> actionPayloadClazz) {
+        if (!isSubClass(rowClazz, actionPayloadClazz)) {
+            String msg = String.format("graph table class is not a subclass of action payload class: graph=%s, action=%s",
+                    rowClazz.getCanonicalName(), actionPayloadClazz.getCanonicalName());
+            throw new RuntimeException(msg);
+        }
+    }
+
+    private static void removeOutputDir(SparkSession spark,
+                                        String path) {
+        HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+    }
+
+    private static <G extends Oaf, A extends Oaf> void promoteActionPayloadForGraphTable(SparkSession spark,
+                                                                                         String inputGraphTablePath,
+                                                                                         String inputActionPayloadPath,
+                                                                                         String outputGraphTablePath,
+                                                                                         MergeAndGet.Strategy strategy,
+                                                                                         Class<G> rowClazz,
+                                                                                         Class<A> actionPayloadClazz) {
+        Dataset<G> rowDS = readGraphTable(spark, inputGraphTablePath, rowClazz);
+        Dataset<A> actionPayloadDS = readActionPayload(spark, inputActionPayloadPath, actionPayloadClazz);
+
+        Dataset<G> result = promoteActionPayloadForGraphTable(rowDS, actionPayloadDS, strategy, rowClazz, actionPayloadClazz)
+                .map((MapFunction<G, G>) value -> value, Encoders.bean(rowClazz));
+
+        saveGraphTable(result, outputGraphTablePath);
+    }
+
+    private static <G extends Oaf> Dataset<G> readGraphTable(SparkSession spark,
+                                                             String path,
+                                                             Class<G> rowClazz) {
+        logger.info("Reading graph table from path: {}", path);
+
+        return spark.read()
+                .textFile(path)
+                .map((MapFunction<String, G>) value -> OBJECT_MAPPER.readValue(value, rowClazz), Encoders.bean(rowClazz));
+
+        /*
+        return spark
+                .read()
+                .parquet(path)
+                .as(Encoders.bean(rowClazz));
+         */
+    }
+
+    private static <A extends Oaf> Dataset<A> readActionPayload(SparkSession spark,
+                                                                String path,
+                                                                Class<A> actionPayloadClazz) {
+        logger.info("Reading action payload from path: {}", path);
+        return spark
+                .read()
+                .parquet(path)
+                .map((MapFunction<Row, A>) value -> OBJECT_MAPPER.readValue(value.<String>getAs("payload"),
+                        actionPayloadClazz), Encoders.bean(actionPayloadClazz));
+    }
+
+    private static <G extends Oaf, A extends Oaf> Dataset<G> promoteActionPayloadForGraphTable(Dataset<G> rowDS,
+                                                                                               Dataset<A> actionPayloadDS,
+                                                                                               MergeAndGet.Strategy strategy,
+                                                                                               Class<G> rowClazz,
+                                                                                               Class<A> actionPayloadClazz) {
+        logger.info("Promoting action payload for graph table: payload={}, table={}", actionPayloadClazz.getSimpleName(), rowClazz.getSimpleName());
+
+        SerializableSupplier<Function<G, String>> rowIdFn = PromoteActionPayloadForGraphTableJob::idFn;
+        SerializableSupplier<Function<A, String>> actionPayloadIdFn = PromoteActionPayloadForGraphTableJob::idFn;
+        SerializableSupplier<BiFunction<G, A, G>> mergeRowWithActionPayloadAndGetFn = MergeAndGet.functionFor(strategy);
+        SerializableSupplier<BiFunction<G, G, G>> mergeRowsAndGetFn = MergeAndGet.functionFor(strategy);
+        SerializableSupplier<G> zeroFn = zeroFn(rowClazz);
+        SerializableSupplier<Function<G, Boolean>> isNotZeroFn = PromoteActionPayloadForGraphTableJob::isNotZeroFnUsingIdOrSource;
+
+        Dataset<G> joinedAndMerged = PromoteActionPayloadFunctions
+                .joinGraphTableWithActionPayloadAndMerge(
+                        rowDS,
+                        actionPayloadDS,
+                        rowIdFn,
+                        actionPayloadIdFn,
+                        mergeRowWithActionPayloadAndGetFn,
+                        rowClazz,
+                        actionPayloadClazz);
+
+        return PromoteActionPayloadFunctions
+                .groupGraphTableByIdAndMerge(
+                        joinedAndMerged,
+                        rowIdFn,
+                        mergeRowsAndGetFn,
+                        zeroFn,
+                        isNotZeroFn,
+                        rowClazz);
+    }
+
+    private static <T extends Oaf> Function<T, String> idFn() {
+        return x -> {
+            if (isSubClass(x, Relation.class)) {
+                return idFnForRelation(x);
+            }
+            return idFnForOafEntity(x);
+        };
+    }
+
+    private static <T extends Oaf> String idFnForRelation(T t) {
+        Relation r = (Relation) t;
+        return Optional.ofNullable(r.getSource())
+                .map(source -> Optional.ofNullable(r.getTarget())
+                        .map(target -> Optional.ofNullable(r.getRelType())
+                                .map(relType -> Optional.ofNullable(r.getSubRelType())
+                                        .map(subRelType -> Optional.ofNullable(r.getRelClass())
+                                                .map(relClass -> String.join(source, target, relType, subRelType, relClass))
+                                                .orElse(String.join(source, target, relType, subRelType))
+                                        )
+                                        .orElse(String.join(source, target, relType))
+                                )
+                                .orElse(String.join(source, target))
+                        )
+                        .orElse(source)
+                )
+                .orElse(null);
+    }
+
+    private static <T extends Oaf> String idFnForOafEntity(T t) {
+        return ((OafEntity) t).getId();
+    }
+
+    private static <T extends Oaf> SerializableSupplier<T> zeroFn(Class<T> clazz) {
+        switch (clazz.getCanonicalName()) {
+            case "eu.dnetlib.dhp.schema.oaf.Dataset":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Dataset());
+            case "eu.dnetlib.dhp.schema.oaf.Datasource":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Datasource());
+            case "eu.dnetlib.dhp.schema.oaf.Organization":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Organization());
+            case "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.OtherResearchProduct());
+            case "eu.dnetlib.dhp.schema.oaf.Project":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Project());
+            case "eu.dnetlib.dhp.schema.oaf.Publication":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Publication());
+            case "eu.dnetlib.dhp.schema.oaf.Relation":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Relation());
+            case "eu.dnetlib.dhp.schema.oaf.Software":
+                return () -> clazz.cast(new eu.dnetlib.dhp.schema.oaf.Software());
+            default:
+                throw new RuntimeException("unknown class: " + clazz.getCanonicalName());
+        }
+    }
+
+    private static <T extends Oaf> Function<T, Boolean> isNotZeroFnUsingIdOrSource() {
+        return t -> {
+            if (isSubClass(t, Relation.class)) {
+                return Objects.nonNull(((Relation) t).getSource());
+            }
+            return Objects.nonNull(((OafEntity) t).getId());
+        };
+    }
+
+    private static <G extends Oaf> void saveGraphTable(Dataset<G> result,
+                                                       String path) {
+        logger.info("Saving graph table to path: {}", path);
+        result
+                .toJSON()
+                .write()
+                .option("compression", "gzip")
+                .text(path);
+    }
+}

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadFunctions.java

@@ -0,0 +1,170 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoder;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.TypedColumn;
+import org.apache.spark.sql.expressions.Aggregator;
+import scala.Tuple2;
+
+import java.util.Objects;
+import java.util.Optional;
+import java.util.function.BiFunction;
+import java.util.function.Function;
+
+import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
+
+/**
+ * Promote action payload functions.
+ */
+public class PromoteActionPayloadFunctions {
+
+    private PromoteActionPayloadFunctions() {
+    }
+
+    /**
+     * Joins dataset representing graph table with dataset representing action payload using supplied functions.
+     *
+     * @param rowDS              Dataset representing graph table
+     * @param actionPayloadDS    Dataset representing action payload
+     * @param rowIdFn            Function used to get the id of graph table row
+     * @param actionPayloadIdFn  Function used to get id of action payload instance
+     * @param mergeAndGetFn      Function used to merge graph table row and action payload instance
+     * @param rowClazz           Class of graph table
+     * @param actionPayloadClazz Class of action payload
+     * @param <G>                Type of graph table row
+     * @param <A>                Type of action payload instance
+     * @return Dataset of merged graph table rows and action payload instances
+     */
+    public static <G extends Oaf, A extends Oaf> Dataset<G> joinGraphTableWithActionPayloadAndMerge(Dataset<G> rowDS,
+                                                                                                    Dataset<A> actionPayloadDS,
+                                                                                                    SerializableSupplier<Function<G, String>> rowIdFn,
+                                                                                                    SerializableSupplier<Function<A, String>> actionPayloadIdFn,
+                                                                                                    SerializableSupplier<BiFunction<G, A, G>> mergeAndGetFn,
+                                                                                                    Class<G> rowClazz,
+                                                                                                    Class<A> actionPayloadClazz) {
+        if (!isSubClass(rowClazz, actionPayloadClazz)) {
+            throw new RuntimeException("action payload type must be the same or be a super type of table row type");
+        }
+
+        Dataset<Tuple2<String, G>> rowWithIdDS = mapToTupleWithId(rowDS, rowIdFn, rowClazz);
+        Dataset<Tuple2<String, A>> actionPayloadWithIdDS = mapToTupleWithId(actionPayloadDS, actionPayloadIdFn, actionPayloadClazz);
+
+        return rowWithIdDS
+                .joinWith(actionPayloadWithIdDS, rowWithIdDS.col("_1").equalTo(actionPayloadWithIdDS.col("_1")), "full_outer")
+                .map((MapFunction<Tuple2<Tuple2<String, G>, Tuple2<String, A>>, G>) value -> {
+                    Optional<G> rowOpt = Optional.ofNullable(value._1()).map(Tuple2::_2);
+                    Optional<A> actionPayloadOpt = Optional.ofNullable(value._2()).map(Tuple2::_2);
+                    return rowOpt
+                            .map(row -> actionPayloadOpt
+                                    .map(actionPayload -> mergeAndGetFn.get().apply(row, actionPayload))
+                                    .orElse(row))
+                            .orElseGet(() -> actionPayloadOpt
+                                    .filter(actionPayload -> actionPayload.getClass().equals(rowClazz))
+                                    .map(rowClazz::cast)
+                                    .orElse(null));
+                }, Encoders.kryo(rowClazz))
+                .filter((FilterFunction<G>) Objects::nonNull);
+    }
+
+    private static <T extends Oaf> Dataset<Tuple2<String, T>> mapToTupleWithId(Dataset<T> ds,
+                                                                               SerializableSupplier<Function<T, String>> idFn,
+                                                                               Class<T> clazz) {
+        return ds
+                .map((MapFunction<T, Tuple2<String, T>>) value -> new Tuple2<>(idFn.get().apply(value), value),
+                        Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
+    }
+
+    /**
+     * Groups graph table by id and aggregates using supplied functions.
+     *
+     * @param rowDS         Dataset representing graph table
+     * @param rowIdFn       Function used to get the id of graph table row
+     * @param mergeAndGetFn Function used to merge graph table rows
+     * @param zeroFn        Function to create a zero/empty instance of graph table row
+     * @param isNotZeroFn   Function to check if graph table row is not zero/empty
+     * @param rowClazz      Class of graph table
+     * @param <G>           Type of graph table row
+     * @return Dataset of aggregated graph table rows
+     */
+    public static <G extends Oaf> Dataset<G> groupGraphTableByIdAndMerge(Dataset<G> rowDS,
+                                                                         SerializableSupplier<Function<G, String>> rowIdFn,
+                                                                         SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
+                                                                         SerializableSupplier<G> zeroFn,
+                                                                         SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
+                                                                         Class<G> rowClazz) {
+        TypedColumn<G, G> aggregator = new TableAggregator<>(zeroFn, mergeAndGetFn, isNotZeroFn, rowClazz).toColumn();
+        return rowDS
+                .groupByKey((MapFunction<G, String>) x -> rowIdFn.get().apply(x), Encoders.STRING())
+                .agg(aggregator)
+                .map((MapFunction<Tuple2<String, G>, G>) Tuple2::_2, Encoders.kryo(rowClazz));
+    }
+
+    /**
+     * Aggregator to be used for aggregating graph table rows during grouping.
+     *
+     * @param <G> Type of graph table row
+     */
+    public static class TableAggregator<G extends Oaf> extends Aggregator<G, G, G> {
+        private SerializableSupplier<G> zeroFn;
+        private SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn;
+        private SerializableSupplier<Function<G, Boolean>> isNotZeroFn;
+        private Class<G> rowClazz;
+
+        public TableAggregator(SerializableSupplier<G> zeroFn,
+                               SerializableSupplier<BiFunction<G, G, G>> mergeAndGetFn,
+                               SerializableSupplier<Function<G, Boolean>> isNotZeroFn,
+                               Class<G> rowClazz) {
+            this.zeroFn = zeroFn;
+            this.mergeAndGetFn = mergeAndGetFn;
+            this.isNotZeroFn = isNotZeroFn;
+            this.rowClazz = rowClazz;
+        }
+
+        @Override
+        public G zero() {
+            return zeroFn.get();
+        }
+
+        @Override
+        public G reduce(G b, G a) {
+            return zeroSafeMergeAndGet(b, a);
+        }
+
+        @Override
+        public G merge(G b1, G b2) {
+            return zeroSafeMergeAndGet(b1, b2);
+        }
+
+        private G zeroSafeMergeAndGet(G left, G right) {
+            Function<G, Boolean> isNotZero = isNotZeroFn.get();
+            if (isNotZero.apply(left) && isNotZero.apply(right)) {
+                return mergeAndGetFn.get().apply(left, right);
+            } else if (isNotZero.apply(left) && !isNotZero.apply(right)) {
+                return left;
+            } else if (!isNotZero.apply(left) && isNotZero.apply(right)) {
+                return right;
+            }
+            throw new RuntimeException("internal aggregation error: left and right objects are zero");
+        }
+
+        @Override
+        public G finish(G reduction) {
+            return reduction;
+        }
+
+        @Override
+        public Encoder<G> bufferEncoder() {
+            return Encoders.kryo(rowClazz);
+        }
+
+        @Override
+        public Encoder<G> outputEncoder() {
+            return Encoders.kryo(rowClazz);
+        }
+    }
+}

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/partition/partition_action_sets_by_payload_type_input_parameters.json

@@ -0,0 +1,26 @@
+[
+  {
+    "paramName": "issm",
+    "paramLongName": "isSparkSessionManaged",
+    "paramDescription": "when true will stop SparkSession after job execution",
+    "paramRequired": false
+  },
+  {
+    "paramName": "iasi",
+    "paramLongName": "inputActionSetIds",
+    "paramDescription": "comma separated list of action set ids to partition by payload type",
+    "paramRequired": true
+  },
+  {
+    "paramName": "op",
+    "paramLongName": "outputPath",
+    "paramDescription": "root output location for partitioned action sets",
+    "paramRequired": true
+  },
+  {
+    "paramName": "is",
+    "paramLongName": "isLookupUrl",
+    "paramDescription": "URL of the isLookUp Service",
+    "paramRequired": true
+  }
+]

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/promote/promote_action_payload_for_graph_table_input_parameters.json

@@ -0,0 +1,44 @@
+[
+  {
+    "paramName": "issm",
+    "paramLongName": "isSparkSessionManaged",
+    "paramDescription": "when true will stop SparkSession after job execution",
+    "paramRequired": false
+  },
+  {
+    "paramName": "igtp",
+    "paramLongName": "inputGraphTablePath",
+    "paramDescription": "location of graph table to promote",
+    "paramRequired": true
+  },
+  {
+    "paramName": "gtcn",
+    "paramLongName": "graphTableClassName",
+    "paramDescription": "canonical name of graph table row class",
+    "paramRequired": true
+  },
+  {
+    "paramName": "iapp",
+    "paramLongName": "inputActionPayloadPath",
+    "paramDescription": "location of action payload to promote",
+    "paramRequired": true
+  },
+  {
+    "paramName": "apcn",
+    "paramLongName": "actionPayloadClassName",
+    "paramDescription": "canonical name of action payload class",
+    "paramRequired": true
+  },
+  {
+    "paramName": "ogtp",
+    "paramLongName": "outputGraphTablePath",
+    "paramDescription": "location of promoted graph table",
+    "paramRequired": true
+  },
+  {
+    "paramName": "mags",
+    "paramLongName": "mergeAndGetStrategy",
+    "paramDescription": "strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET",
+    "paramRequired": true
+  }
+]

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/dataset/oozie_app/workflow.xml

@@ -0,0 +1,178 @@
+<workflow-app name="promote_action_payload_for_dataset_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteDatasetActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Dataset payload</description>
+        </property>
+        <property>
+            <name>activePromoteResultActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Result payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteDatasetActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteDatasetActionPayload">
+        <switch>
+            <case to="PromoteDatasetActionPayloadForDatasetTable">
+                ${(activePromoteDatasetActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'dataset')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Dataset')) eq "true")}
+            </case>
+            <default to="SkipPromoteDatasetActionPayloadForDatasetTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteDatasetActionPayloadForDatasetTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteDatasetActionPayloadForDatasetTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/dataset</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--outputGraphTablePath</arg><arg>${workingDir}/dataset</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="DecisionPromoteResultActionPayloadForDatasetTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteDatasetActionPayloadForDatasetTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/dataset</arg>
+            <arg>${workingDir}/dataset</arg>
+        </distcp>
+        <ok to="DecisionPromoteResultActionPayloadForDatasetTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="DecisionPromoteResultActionPayloadForDatasetTable">
+        <switch>
+            <case to="PromoteResultActionPayloadForDatasetTable">
+                ${(activePromoteResultActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Result')) eq "true")}
+            </case>
+            <default to="SkipPromoteResultActionPayloadForDatasetTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteResultActionPayloadForDatasetTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteResultActionPayloadForDatasetTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${workingDir}/dataset</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/dataset</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteResultActionPayloadForDatasetTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${workingDir}/dataset</arg>
+            <arg>${outputGraphRootPath}/dataset</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/datasource/oozie_app/workflow.xml

@@ -0,0 +1,125 @@
+<workflow-app name="promote_action_payload_for_datasource_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteDatasourceActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Datasource payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteDatasourceActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteDatasourceActionPayload">
+        <switch>
+            <case to="PromoteDatasourceActionPayloadForDatasourceTable">
+                ${(activePromoteDatasourceActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'datasource')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Datasource')) eq "true")}
+            </case>
+            <default to="SkipPromoteDatasourceActionPayloadForDatasourceTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteDatasourceActionPayloadForDatasourceTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteDatasourceActionPayloadForDatasourceTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/datasource</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Datasource</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/datasource</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteDatasourceActionPayloadForDatasourceTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/datasource</arg>
+            <arg>${outputGraphRootPath}/datasource</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/main/oozie_app/import.txt

@@ -0,0 +1,9 @@
+## This is a classpath-based import file (this header is required)
+promote_action_payload_for_dataset_table classpath eu/dnetlib/dhp/actionmanager/wf/dataset/oozie_app
+promote_action_payload_for_datasource_table classpath eu/dnetlib/dhp/actionmanager/wf/datasource/oozie_app
+promote_action_payload_for_organization_table classpath eu/dnetlib/dhp/actionmanager/wf/organization/oozie_app
+promote_action_payload_for_otherresearchproduct_table classpath eu/dnetlib/dhp/actionmanager/wf/otherresearchproduct/oozie_app
+promote_action_payload_for_project_table classpath eu/dnetlib/dhp/actionmanager/wf/project/oozie_app
+promote_action_payload_for_publication_table classpath eu/dnetlib/dhp/actionmanager/wf/publication/oozie_app
+promote_action_payload_for_relation_table classpath eu/dnetlib/dhp/actionmanager/wf/relation/oozie_app
+promote_action_payload_for_software_table classpath eu/dnetlib/dhp/actionmanager/wf/software/oozie_app

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/main/oozie_app/workflow.xml

@@ -0,0 +1,270 @@
+<workflow-app name="promote_actionsets_for_graph" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteDatasetActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Dataset payload</description>
+        </property>
+        <property>
+            <name>activePromoteDatasourceActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Datasource payload</description>
+        </property>
+        <property>
+            <name>activePromoteOrganizationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Organization payload</description>
+        </property>
+        <property>
+            <name>activePromoteOtherResearchProductActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.OtherResearchProduct payload</description>
+        </property>
+        <property>
+            <name>activePromoteProjectActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Project payload</description>
+        </property>
+        <property>
+            <name>activePromotePublicationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Publication payload</description>
+        </property>
+        <property>
+            <name>activePromoteRelationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Relation payload</description>
+        </property>
+        <property>
+            <name>activePromoteResultActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Result payload</description>
+        </property>
+        <property>
+            <name>activePromoteSoftwareActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Software payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>isLookupUrl</name>
+            <description>URL of the ISLookupService</description>
+        </property>
+        <property>
+            <name>inputActionSetIds</name>
+            <description>comma separated list of action set ids to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="PartitionActionSetsByPayloadType"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="PartitionActionSetsByPayloadType">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PartitionActionSetsByPayloadType</name>
+            <class>eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputActionSetIds</arg><arg>${inputActionSetIds}</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/action_payload_by_type</arg>
+            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
+        </spark>
+        <ok to="ForkPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <fork name="ForkPromote">
+        <path start="PromoteActionPayloadForDatasetTable"/>
+        <path start="PromoteActionPayloadForDatasourceTable"/>
+        <path start="PromoteActionPayloadForOrganizationTable"/>
+        <path start="PromoteActionPayloadForOtherResearchProductTable"/>
+        <path start="PromoteActionPayloadForProjectTable"/>
+        <path start="PromoteActionPayloadForPublicationTable"/>
+        <path start="PromoteActionPayloadForRelationTable"/>
+        <path start="PromoteActionPayloadForSoftwareTable"/>
+    </fork>
+
+    <action name="PromoteActionPayloadForDatasetTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_dataset_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForDatasourceTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_datasource_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForOrganizationTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_organization_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForOtherResearchProductTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_otherresearchproduct_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForProjectTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_project_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForPublicationTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_publication_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForRelationTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_relation_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="PromoteActionPayloadForSoftwareTable">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/promote_action_payload_for_software_table</app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>inputActionPayloadRootPath</name>
+                    <value>${workingDir}/action_payload_by_type</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="JoinPromote"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="JoinPromote" to="End"/>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/organization/oozie_app/workflow.xml

@@ -0,0 +1,125 @@
+<workflow-app name="promote_action_payload_for_organization_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteOrganizationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Organization payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteOrganizationActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteOrganizationActionPayload">
+        <switch>
+            <case to="PromoteOrganizationActionPayloadForOrganizationTable">
+                ${(activePromoteOrganizationActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'organization')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Organization')) eq "true")}
+            </case>
+            <default to="SkipPromoteOrganizationActionPayloadForOrganizationTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteOrganizationActionPayloadForOrganizationTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteOrganizationActionPayloadForOrganizationTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/organization</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Organization</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/organization</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteOrganizationActionPayloadForOrganizationTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/organization</arg>
+            <arg>${outputGraphRootPath}/organization</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/otherresearchproduct/oozie_app/workflow.xml

@@ -0,0 +1,177 @@
+<workflow-app name="promote_action_payload_for_otherresearchproduct_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteOtherResearchProductActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.OtherResearchProduct payload</description>
+        </property>
+        <property>
+            <name>activePromoteResultActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Result payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteOtherResearchProductActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteOtherResearchProductActionPayload">
+        <switch>
+            <case to="PromoteOtherResearchProductActionPayloadForOtherResearchProductTable">
+                ${(activePromoteOtherResearchProductActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'otherresearchproduct')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.OtherResearchProduct')) eq "true")}
+            </case>
+            <default to="SkipPromoteOtherResearchProductActionPayloadForOtherResearchProductTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteOtherResearchProductActionPayloadForOtherResearchProductTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteOtherResearchProductActionPayloadForOtherResearchProductTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/otherresearchproduct</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--outputGraphTablePath</arg><arg>${workingDir}/otherresearchproduct</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="DecisionPromoteResultActionPayloadForOtherResearchProductTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteOtherResearchProductActionPayloadForOtherResearchProductTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/otherresearchproduct</arg>
+            <arg>${workingDir}/otherresearchproduct</arg>
+        </distcp>
+        <ok to="DecisionPromoteResultActionPayloadForOtherResearchProductTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="DecisionPromoteResultActionPayloadForOtherResearchProductTable">
+        <switch>
+            <case to="PromoteResultActionPayloadForOtherResearchProductTable">
+                ${(activePromoteResultActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Result')) eq "true")}
+            </case>
+            <default to="SkipPromoteResultActionPayloadForOtherResearchProductTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteResultActionPayloadForOtherResearchProductTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteResultActionPayloadForOtherResearchProductTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${workingDir}/otherresearchproduct</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/otherresearchproduct</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteResultActionPayloadForOtherResearchProductTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${workingDir}/otherresearchproduct</arg>
+            <arg>${outputGraphRootPath}/otherresearchproduct</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/project/oozie_app/workflow.xml

@@ -0,0 +1,125 @@
+<workflow-app name="promote_action_payload_for_project_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteProjectActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.OtherResearchProduct payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteProjectActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteProjectActionPayload">
+        <switch>
+            <case to="PromoteProjectActionPayloadForProjectTable">
+                ${(activePromoteProjectActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'project')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Project')) eq "true")}
+            </case>
+            <default to="SkipPromoteProjectActionPayloadForProjectTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteProjectActionPayloadForProjectTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteProjectActionPayloadForProjectTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/project</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Project</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/project</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteProjectActionPayloadForProjectTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/project</arg>
+            <arg>${outputGraphRootPath}/project</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/publication/oozie_app/workflow.xml

@@ -0,0 +1,178 @@
+<workflow-app name="promote_action_payload_for_publication_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromotePublicationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Publication payload</description>
+        </property>
+        <property>
+            <name>activePromoteResultActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Result payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromotePublicationActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromotePublicationActionPayload">
+        <switch>
+            <case to="PromotePublicationActionPayloadForPublicationTable">
+                ${(activePromotePublicationActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'publication')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Publication')) eq "true")}
+            </case>
+            <default to="SkipPromotePublicationActionPayloadForPublicationTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromotePublicationActionPayloadForPublicationTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromotePublicationActionPayloadForPublicationTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/publication</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--outputGraphTablePath</arg><arg>${workingDir}/publication</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="DecisionPromoteResultActionPayloadForPublicationTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromotePublicationActionPayloadForPublicationTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/publication</arg>
+            <arg>${workingDir}/publication</arg>
+        </distcp>
+        <ok to="DecisionPromoteResultActionPayloadForPublicationTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="DecisionPromoteResultActionPayloadForPublicationTable">
+        <switch>
+            <case to="PromoteResultActionPayloadForPublicationTable">
+                ${(activePromoteResultActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Result')) eq "true")}
+            </case>
+            <default to="SkipPromoteResultActionPayloadForPublicationTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteResultActionPayloadForPublicationTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteResultActionPayloadForPublicationTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${workingDir}/publication</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/publication</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteResultActionPayloadForPublicationTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${workingDir}/publication</arg>
+            <arg>${outputGraphRootPath}/publication</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/relation/oozie_app/workflow.xml

@@ -0,0 +1,126 @@
+<workflow-app name="promote_action_payload_for_relation_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteRelationActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Relation payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteRelationActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteRelationActionPayload">
+        <switch>
+            <case to="PromoteRelationActionPayloadForRelationTable">
+                ${(activePromoteRelationActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'relation')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Relation')) eq "true")}
+            </case>
+            <default to="SkipPromoteRelationActionPayloadForRelationTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteRelationActionPayloadForRelationTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteRelationActionPayloadForRelationTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/relation</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Relation</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Relation</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Relation</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/relation</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteRelationActionPayloadForRelationTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/relation</arg>
+            <arg>${outputGraphRootPath}/relation</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/software/oozie_app/workflow.xml

@@ -0,0 +1,177 @@
+<workflow-app name="promote_action_payload_for_software_table" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>activePromoteSoftwareActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Software payload</description>
+        </property>
+        <property>
+            <name>activePromoteResultActionPayload</name>
+            <description>when true will promote actions with eu.dnetlib.dhp.schema.oaf.Result payload</description>
+        </property>
+        <property>
+            <name>inputGraphRootPath</name>
+            <description>root location of input materialized graph</description>
+        </property>
+        <property>
+            <name>inputActionPayloadRootPath</name>
+            <description>root location of action payloads to promote</description>
+        </property>
+        <property>
+            <name>outputGraphRootPath</name>
+            <description>root location for output materialized graph</description>
+        </property>
+        <property>
+            <name>mergeAndGetStrategy</name>
+            <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="DecisionPromoteSoftfwareActionPayload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="DecisionPromoteSoftfwareActionPayload">
+        <switch>
+            <case to="PromoteSoftwareActionPayloadForSoftwareTable">
+                ${(activePromoteSoftwareActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputGraphRootPath')),'/'),'software')) eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Software')) eq "true")}
+            </case>
+            <default to="SkipPromoteSoftwareActionPayloadForSoftwareTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteSoftwareActionPayloadForSoftwareTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteSoftwareActionPayloadForSoftwareTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${inputGraphRootPath}/software</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--outputGraphTablePath</arg><arg>${workingDir}/software</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="DecisionPromoteResultActionPayloadForSoftwareTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteSoftwareActionPayloadForSoftwareTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${inputGraphRootPath}/software</arg>
+            <arg>${workingDir}/software</arg>
+        </distcp>
+        <ok to="DecisionPromoteResultActionPayloadForSoftwareTable"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="DecisionPromoteResultActionPayloadForSoftwareTable">
+        <switch>
+            <case to="PromoteResultActionPayloadForSoftwareTable">
+                ${(activePromoteResultActionPayload eq "true") and
+                (fs:exists(concat(concat(concat(concat(wf:conf('nameNode'),'/'),wf:conf('inputActionPayloadRootPath')),'/'),'clazz=eu.dnetlib.dhp.schema.oaf.Result')) eq "true")}
+            </case>
+            <default to="SkipPromoteResultActionPayloadForSoftwareTable"/>
+        </switch>
+    </decision>
+
+    <action name="PromoteResultActionPayloadForSoftwareTable">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>PromoteResultActionPayloadForSoftwareTable</name>
+            <class>eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJob</class>
+            <jar>dhp-actionmanager-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=2560
+            </spark-opts>
+            <arg>--inputGraphTablePath</arg><arg>${workingDir}/software</arg>
+            <arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--inputActionPayloadPath</arg><arg>${inputActionPayloadRootPath}/clazz=eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
+            <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/software</arg>
+            <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="SkipPromoteResultActionPayloadForSoftwareTable">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>-pb</arg>
+            <arg>${workingDir}/software</arg>
+            <arg>${outputGraphRootPath}/software</arg>
+        </distcp>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/partition/PartitionActionSetsByPayloadTypeJobTest.java

@@ -0,0 +1,221 @@
+package eu.dnetlib.dhp.actionmanager.partition;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.google.common.collect.Lists;
+import eu.dnetlib.dhp.actionmanager.ISClient;
+import eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.io.Text;
+import org.apache.hadoop.mapreduce.Job;
+import org.apache.hadoop.mapreduce.lib.output.SequenceFileOutputFormat;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.Row;
+import org.apache.spark.sql.SparkSession;
+import org.apache.spark.sql.types.*;
+import org.junit.jupiter.api.*;
+import org.junit.jupiter.api.extension.ExtendWith;
+import org.junit.jupiter.api.io.TempDir;
+import org.mockito.Mock;
+import org.mockito.Mockito;
+import org.mockito.junit.jupiter.MockitoExtension;
+import scala.Tuple2;
+import scala.collection.mutable.Seq;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+import java.util.*;
+import java.util.stream.Collectors;
+
+import static eu.dnetlib.dhp.common.ThrowingSupport.rethrowAsRuntimeException;
+import static org.apache.spark.sql.functions.*;
+import static org.junit.jupiter.api.Assertions.assertIterableEquals;
+import static scala.collection.JavaConversions.mutableSeqAsJavaList;
+
+@ExtendWith(MockitoExtension.class)
+public class PartitionActionSetsByPayloadTypeJobTest {
+    private static final ClassLoader cl = PartitionActionSetsByPayloadTypeJobTest.class.getClassLoader();
+
+    private static Configuration configuration;
+    private static SparkSession spark;
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+    private static final StructType ATOMIC_ACTION_SCHEMA = StructType$.MODULE$.apply(
+            Arrays.asList(
+                    StructField$.MODULE$.apply("clazz", DataTypes.StringType, false, Metadata.empty()),
+                    StructField$.MODULE$.apply("payload", DataTypes.StringType, false, Metadata.empty())
+            ));
+
+    @BeforeAll
+    public static void beforeAll() throws IOException {
+        configuration = Job.getInstance().getConfiguration();
+        SparkConf conf = new SparkConf();
+        conf.setAppName(PromoteActionPayloadForGraphTableJobTest.class.getSimpleName());
+        conf.setMaster("local");
+        conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+        spark = SparkSession.builder().config(conf).getOrCreate();
+    }
+
+    @AfterAll
+    public static void afterAll() {
+        spark.stop();
+    }
+
+    @DisplayName("Job")
+    @Nested
+    class Main {
+
+        @Mock
+        private ISClient isClient;
+
+        @Test
+        public void shouldPartitionActionSetsByPayloadType(@TempDir Path workingDir) throws Exception {
+            // given
+            Path inputActionSetsBaseDir = workingDir.resolve("input").resolve("action_sets");
+            Path outputDir = workingDir.resolve("output");
+
+            Map<String, List<String>> oafsByClassName = createActionSets(inputActionSetsBaseDir);
+
+            List<String> inputActionSetsPaths = resolveInputActionSetPaths(inputActionSetsBaseDir);
+
+            // when
+            Mockito.when(isClient.getLatestRawsetPaths(Mockito.anyString())).thenReturn(inputActionSetsPaths);
+
+            PartitionActionSetsByPayloadTypeJob job = new PartitionActionSetsByPayloadTypeJob();
+            job.setIsClient(isClient);
+            job.run(
+                    Boolean.FALSE,
+                    "", // it can be empty we're mocking the response from isClient to resolve the paths
+                    outputDir.toString()
+            );
+
+            // then
+            Files.exists(outputDir);
+
+            assertForOafType(outputDir, oafsByClassName, eu.dnetlib.dhp.schema.oaf.Dataset.class);
+            assertForOafType(outputDir, oafsByClassName, Datasource.class);
+            assertForOafType(outputDir, oafsByClassName, Organization.class);
+            assertForOafType(outputDir, oafsByClassName, OtherResearchProduct.class);
+            assertForOafType(outputDir, oafsByClassName, Project.class);
+            assertForOafType(outputDir, oafsByClassName, Publication.class);
+            assertForOafType(outputDir, oafsByClassName, Result.class);
+            assertForOafType(outputDir, oafsByClassName, Relation.class);
+            assertForOafType(outputDir, oafsByClassName, Software.class);
+        }
+    }
+
+    private List<String> resolveInputActionSetPaths(Path inputActionSetsBaseDir) throws IOException {
+        Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
+        return Files
+                .list(inputActionSetJsonDumpsDir)
+                .map(path -> {
+                    String inputActionSetId = path.getFileName().toString();
+                    return inputActionSetsBaseDir.resolve(inputActionSetId).toString();
+                })
+                .collect(Collectors.toCollection(ArrayList::new));
+    }
+
+    private static Map<String, List<String>> createActionSets(Path inputActionSetsDir) throws IOException {
+        Path inputActionSetJsonDumpsDir = getInputActionSetJsonDumpsDir();
+
+        Map<String, List<String>> oafsByType = new HashMap<>();
+        Files
+                .list(inputActionSetJsonDumpsDir)
+                .forEach(inputActionSetJsonDumpFile -> {
+                    String inputActionSetId = inputActionSetJsonDumpFile.getFileName().toString();
+                    Path inputActionSetDir = inputActionSetsDir.resolve(inputActionSetId);
+
+                    Dataset<String> actionDS = readActionsFromJsonDump(inputActionSetJsonDumpFile.toString())
+                            .cache();
+
+                    writeActionsAsJobInput(actionDS, inputActionSetId, inputActionSetDir.toString());
+
+                    Map<String, List<String>> actionSetOafsByType = actionDS
+                            .withColumn("atomic_action", from_json(col("value"), ATOMIC_ACTION_SCHEMA))
+                            .select(expr("atomic_action.*"))
+                            .groupBy(col("clazz"))
+                            .agg(collect_list(col("payload")).as("payload_list"))
+                            .collectAsList()
+                            .stream()
+                            .map(row -> new AbstractMap.SimpleEntry<>(row.<String>getAs("clazz"),
+                                    mutableSeqAsJavaList(row.<Seq<String>>getAs("payload_list"))))
+                            .collect(Collectors.toMap(AbstractMap.SimpleEntry::getKey, AbstractMap.SimpleEntry::getValue));
+
+                    actionSetOafsByType.keySet()
+                            .forEach(x -> {
+                                if (oafsByType.containsKey(x)) {
+                                    List<String> collected = new ArrayList<>();
+                                    collected.addAll(oafsByType.get(x));
+                                    collected.addAll(actionSetOafsByType.get(x));
+                                    oafsByType.put(x, collected);
+                                } else {
+                                    oafsByType.put(x, actionSetOafsByType.get(x));
+                                }
+                            });
+                });
+
+        return oafsByType;
+    }
+
+    private static Path getInputActionSetJsonDumpsDir() {
+        return Paths
+                .get(Objects.requireNonNull(cl.getResource("eu/dnetlib/dhp/actionmanager/partition/input/"))
+                        .getFile());
+    }
+
+    private static Dataset<String> readActionsFromJsonDump(String path) {
+        return spark
+                .read()
+                .textFile(path);
+    }
+
+    private static void writeActionsAsJobInput(Dataset<String> actionDS,
+                                               String inputActionSetId,
+                                               String path) {
+        actionDS
+                .javaRDD()
+                .mapToPair(json -> new Tuple2<>(new Text(inputActionSetId), new Text(json)))
+                .saveAsNewAPIHadoopFile(path,
+                        Text.class,
+                        Text.class,
+                        SequenceFileOutputFormat.class,
+                        configuration);
+    }
+
+    private static <T extends Oaf> void assertForOafType(Path outputDir, Map<String, List<String>> oafsByClassName, Class<T> clazz) {
+        Path outputDatasetDir = outputDir.resolve(String.format("clazz=%s", clazz.getCanonicalName()));
+        Files.exists(outputDatasetDir);
+
+        List<T> actuals = readActionPayloadFromJobOutput(outputDatasetDir.toString(), clazz).collectAsList();
+        actuals.sort(Comparator.comparingInt(Object::hashCode));
+
+        List<T> expecteds = oafsByClassName.get(clazz.getCanonicalName()).stream()
+                .map(json -> mapToOaf(json, clazz))
+                .sorted(Comparator.comparingInt(Object::hashCode))
+                .collect(Collectors.toList());
+
+        assertIterableEquals(expecteds, actuals);
+    }
+
+    private static <T extends Oaf> Dataset<T> readActionPayloadFromJobOutput(String path,
+                                                                             Class<T> clazz) {
+        return spark
+                .read()
+                .parquet(path)
+                .map((MapFunction<Row, T>) value -> OBJECT_MAPPER.readValue(value.<String>getAs("payload"), clazz),
+                        Encoders.bean(clazz));
+    }
+
+    private static <T extends Oaf> T mapToOaf(String json, Class<T> clazz) {
+        return rethrowAsRuntimeException(
+                () -> OBJECT_MAPPER.readValue(json, clazz),
+                String.format("failed to map json to class: json=%s, class=%s", json, clazz.getCanonicalName())
+        );
+    }
+}

dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/promote/MergeAndGetTest.java

@@ -0,0 +1,268 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.junit.jupiter.api.Nested;
+import org.junit.jupiter.api.Test;
+
+import java.util.function.BiFunction;
+
+import static eu.dnetlib.dhp.actionmanager.promote.MergeAndGet.Strategy;
+import static eu.dnetlib.dhp.actionmanager.promote.MergeAndGet.functionFor;
+import static org.junit.jupiter.api.Assertions.*;
+import static org.mockito.Mockito.*;
+
+public class MergeAndGetTest {
+
+    @Nested
+    class MergeFromAndGetStrategy {
+
+        @Test
+        public void shouldThrowForOafAndOaf() {
+            // given
+            Oaf a = mock(Oaf.class);
+            Oaf b = mock(Oaf.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForOafAndRelation() {
+            // given
+            Oaf a = mock(Oaf.class);
+            Relation b = mock(Relation.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForOafAndOafEntity() {
+            // given
+            Oaf a = mock(Oaf.class);
+            OafEntity b = mock(OafEntity.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForRelationAndOaf() {
+            // given
+            Relation a = mock(Relation.class);
+            Oaf b = mock(Oaf.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForRelationAndOafEntity() {
+            // given
+            Relation a = mock(Relation.class);
+            OafEntity b = mock(OafEntity.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldBehaveProperlyForRelationAndRelation() {
+            // given
+            Relation a = mock(Relation.class);
+            Relation b = mock(Relation.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            Oaf x = fn.get().apply(a, b);
+            assertTrue(Relation.class.isAssignableFrom(x.getClass()));
+            verify(a).mergeFrom(b);
+            assertEquals(a, x);
+        }
+
+        @Test
+        public void shouldThrowForOafEntityAndOaf() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            Oaf b = mock(Oaf.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForOafEntityAndRelation() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            Relation b = mock(Relation.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForOafEntityAndOafEntityButNotSubclasses() {
+            // given
+            class OafEntitySub1 extends OafEntity {
+            }
+            class OafEntitySub2 extends OafEntity {
+            }
+
+            OafEntitySub1 a = mock(OafEntitySub1.class);
+            OafEntitySub2 b = mock(OafEntitySub2.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldBehaveProperlyForOafEntityAndOafEntity() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            OafEntity b = mock(OafEntity.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.MERGE_FROM_AND_GET);
+
+            // then
+            Oaf x = fn.get().apply(a, b);
+            assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
+            verify(a).mergeFrom(b);
+            assertEquals(a, x);
+        }
+    }
+
+    @Nested
+    class SelectNewerAndGetStrategy {
+
+        @Test
+        public void shouldThrowForOafEntityAndRelation() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            Relation b = mock(Relation.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForRelationAndOafEntity() {
+            // given
+            Relation a = mock(Relation.class);
+            OafEntity b = mock(OafEntity.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowForOafEntityAndResult() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            Result b = mock(Result.class);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldThrowWhenSuperTypeIsNewerForResultAndOafEntity() {
+            // given
+            // real types must be used because subclass-superclass resolution does not work for mocks
+            Dataset a = new Dataset();
+            a.setLastupdatetimestamp(1L);
+            Result b = new Result();
+            b.setLastupdatetimestamp(2L);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn = functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            assertThrows(RuntimeException.class, () ->
+                    fn.get().apply(a, b));
+        }
+
+        @Test
+        public void shouldShouldReturnLeftForOafEntityAndOafEntity() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            when(a.getLastupdatetimestamp()).thenReturn(1L);
+            OafEntity b = mock(OafEntity.class);
+            when(b.getLastupdatetimestamp()).thenReturn(2L);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
+                    functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            Oaf x = fn.get().apply(a, b);
+            assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
+            assertEquals(b, x);
+        }
+
+        @Test
+        public void shouldShouldReturnRightForOafEntityAndOafEntity() {
+            // given
+            OafEntity a = mock(OafEntity.class);
+            when(a.getLastupdatetimestamp()).thenReturn(2L);
+            OafEntity b = mock(OafEntity.class);
+            when(b.getLastupdatetimestamp()).thenReturn(1L);
+
+            // when
+            SerializableSupplier<BiFunction<Oaf, Oaf, Oaf>> fn =
+                    functionFor(Strategy.SELECT_NEWER_AND_GET);
+
+            // then
+            Oaf x = fn.get().apply(a, b);
+            assertTrue(OafEntity.class.isAssignableFrom(x.getClass()));
+            assertEquals(a, x);
+        }
+    }
+}

dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadForGraphTableJobTest.java

@@ -0,0 +1,239 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.commons.io.FileUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.*;
+import org.junit.jupiter.params.ParameterizedTest;
+import org.junit.jupiter.params.provider.Arguments;
+import org.junit.jupiter.params.provider.MethodSource;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+import java.util.Comparator;
+import java.util.List;
+import java.util.Objects;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
+
+import static org.junit.jupiter.api.Assertions.*;
+import static org.junit.jupiter.params.provider.Arguments.arguments;
+
+public class PromoteActionPayloadForGraphTableJobTest {
+    private static final ClassLoader cl = PromoteActionPayloadForGraphTableJobTest.class.getClassLoader();
+
+    private static SparkSession spark;
+
+    private Path workingDir;
+    private Path inputDir;
+    private Path inputGraphRootDir;
+    private Path inputActionPayloadRootDir;
+    private Path outputDir;
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+    @BeforeAll
+    public static void beforeAll() {
+        SparkConf conf = new SparkConf();
+        conf.setAppName(PromoteActionPayloadForGraphTableJobTest.class.getSimpleName());
+        conf.setMaster("local");
+        conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+        conf.registerKryoClasses(ModelSupport.getOafModelClasses());
+        spark = SparkSession.builder().config(conf).getOrCreate();
+    }
+
+    @BeforeEach
+    public void beforeEach() throws IOException {
+        workingDir = Files.createTempDirectory(PromoteActionPayloadForGraphTableJobTest.class.getSimpleName());
+        inputDir = workingDir.resolve("input");
+        inputGraphRootDir = inputDir.resolve("graph");
+        inputActionPayloadRootDir = inputDir.resolve("action_payload");
+        outputDir = workingDir.resolve("output");
+    }
+
+    @AfterEach
+    public void afterEach() throws IOException {
+        FileUtils.deleteDirectory(workingDir.toFile());
+    }
+
+    @AfterAll
+    public static void afterAll() {
+        spark.stop();
+    }
+
+    @DisplayName("Job")
+    @Nested
+    class Main {
+
+        @Test
+        public void shouldThrowWhenGraphTableClassIsNotASubClassOfActionPayloadClass() {
+            // given
+            Class<Relation> rowClazz = Relation.class;
+            Class<OafEntity> actionPayloadClazz = OafEntity.class;
+
+            // when
+            RuntimeException exception = assertThrows(RuntimeException.class, () ->
+                    PromoteActionPayloadForGraphTableJob.main(new String[]{
+                            "-isSparkSessionManaged", Boolean.FALSE.toString(),
+                            "-inputGraphTablePath", "",
+                            "-graphTableClassName", rowClazz.getCanonicalName(),
+                            "-inputActionPayloadPath", "",
+                            "-actionPayloadClassName", actionPayloadClazz.getCanonicalName(),
+                            "-outputGraphTablePath", "",
+                            "-mergeAndGetStrategy", MergeAndGet.Strategy.SELECT_NEWER_AND_GET.name()
+                    }));
+
+            // then
+            String msg = String.format("graph table class is not a subclass of action payload class: graph=%s, action=%s",
+                    rowClazz.getCanonicalName(), actionPayloadClazz.getCanonicalName());
+            assertTrue(exception.getMessage().contains(msg));
+        }
+
+        @ParameterizedTest(name = "strategy: {0}, graph table: {1}, action payload: {2}")
+        @MethodSource("eu.dnetlib.dhp.actionmanager.promote.PromoteActionPayloadForGraphTableJobTest#promoteJobTestParams")
+        public void shouldPromoteActionPayloadForGraphTable(MergeAndGet.Strategy strategy,
+                                                            Class<? extends Oaf> rowClazz,
+                                                            Class<? extends Oaf> actionPayloadClazz) throws Exception {
+            // given
+            Path inputGraphTableDir = createGraphTable(inputGraphRootDir, rowClazz);
+            Path inputActionPayloadDir = createActionPayload(inputActionPayloadRootDir, rowClazz, actionPayloadClazz);
+            Path outputGraphTableDir = outputDir.resolve("graph").resolve(rowClazz.getSimpleName().toLowerCase());
+
+            // when
+            PromoteActionPayloadForGraphTableJob.main(new String[]{
+                    "-isSparkSessionManaged", Boolean.FALSE.toString(),
+                    "-inputGraphTablePath", inputGraphTableDir.toString(),
+                    "-graphTableClassName", rowClazz.getCanonicalName(),
+                    "-inputActionPayloadPath", inputActionPayloadDir.toString(),
+                    "-actionPayloadClassName", actionPayloadClazz.getCanonicalName(),
+                    "-outputGraphTablePath", outputGraphTableDir.toString(),
+                    "-mergeAndGetStrategy", strategy.name()
+            });
+
+            // then
+            assertTrue(Files.exists(outputGraphTableDir));
+
+            List<? extends Oaf> actualOutputRows = readGraphTableFromJobOutput(outputGraphTableDir.toString(), rowClazz)
+                    .collectAsList()
+                    .stream()
+                    .sorted(Comparator.comparingInt(Object::hashCode))
+                    .collect(Collectors.toList());
+            String expectedOutputGraphTableJsonDumpPath = resultFileLocation(strategy, rowClazz, actionPayloadClazz);
+            Path expectedOutputGraphTableJsonDumpFile = Paths
+                    .get(Objects.requireNonNull(cl.getResource(expectedOutputGraphTableJsonDumpPath)).getFile());
+            List<? extends Oaf> expectedOutputRows = readGraphTableFromJsonDump(expectedOutputGraphTableJsonDumpFile.toString(), rowClazz)
+                    .collectAsList()
+                    .stream()
+                    .sorted(Comparator.comparingInt(Object::hashCode))
+                    .collect(Collectors.toList());
+            assertIterableEquals(expectedOutputRows, actualOutputRows);
+        }
+    }
+
+    public static Stream<Arguments> promoteJobTestParams() {
+        return Stream.of(
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, eu.dnetlib.dhp.schema.oaf.Dataset.class, eu.dnetlib.dhp.schema.oaf.Dataset.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, eu.dnetlib.dhp.schema.oaf.Dataset.class, eu.dnetlib.dhp.schema.oaf.Result.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Datasource.class, Datasource.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Organization.class, Organization.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, OtherResearchProduct.class, OtherResearchProduct.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, OtherResearchProduct.class, Result.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Project.class, Project.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Publication.class, Publication.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Publication.class, Result.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Relation.class, Relation.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Software.class, Software.class),
+                arguments(MergeAndGet.Strategy.MERGE_FROM_AND_GET, Software.class, Result.class)
+        );
+    }
+
+    private static <G extends Oaf> Path createGraphTable(Path inputGraphRootDir,
+                                                         Class<G> rowClazz) {
+        String inputGraphTableJsonDumpPath = inputGraphTableJsonDumpLocation(rowClazz);
+        Path inputGraphTableJsonDumpFile = Paths
+                .get(Objects.requireNonNull(cl.getResource(inputGraphTableJsonDumpPath)).getFile());
+        Dataset<G> rowDS = readGraphTableFromJsonDump(inputGraphTableJsonDumpFile.toString(), rowClazz);
+        String inputGraphTableName = rowClazz.getSimpleName().toLowerCase();
+        Path inputGraphTableDir = inputGraphRootDir.resolve(inputGraphTableName);
+        writeGraphTableAaJobInput(rowDS, inputGraphTableDir.toString());
+        return inputGraphTableDir;
+    }
+
+    private static String inputGraphTableJsonDumpLocation(Class<? extends Oaf> rowClazz) {
+        return String.format(
+                "%s/%s.json", "eu/dnetlib/dhp/actionmanager/promote/input/graph", rowClazz.getSimpleName().toLowerCase());
+    }
+
+    private static <G extends Oaf> Dataset<G> readGraphTableFromJsonDump(String path,
+                                                                         Class<G> rowClazz) {
+        return spark
+                .read()
+                .textFile(path)
+                .map((MapFunction<String, G>) json -> OBJECT_MAPPER.readValue(json, rowClazz), Encoders.bean(rowClazz));
+    }
+
+    private static <G extends Oaf> void writeGraphTableAaJobInput(Dataset<G> rowDS,
+                                                                  String path) {
+        rowDS
+                .write()
+                .option("compression", "gzip")
+                .json(path);
+    }
+
+    private static <G extends Oaf, A extends Oaf> Path createActionPayload(Path inputActionPayloadRootDir,
+                                                                           Class<G> rowClazz,
+                                                                           Class<A> actionPayloadClazz) {
+        String inputActionPayloadJsonDumpPath = inputActionPayloadJsonDumpLocation(rowClazz, actionPayloadClazz);
+        Path inputActionPayloadJsonDumpFile = Paths
+                .get(Objects.requireNonNull(cl.getResource(inputActionPayloadJsonDumpPath)).getFile());
+        Dataset<String> actionPayloadDS = readActionPayloadFromJsonDump(inputActionPayloadJsonDumpFile.toString());
+        Path inputActionPayloadDir = inputActionPayloadRootDir.resolve(actionPayloadClazz.getSimpleName().toLowerCase());
+        writeActionPayloadAsJobInput(actionPayloadDS, inputActionPayloadDir.toString());
+        return inputActionPayloadDir;
+    }
+
+    private static String inputActionPayloadJsonDumpLocation(Class<? extends Oaf> rowClazz,
+                                                             Class<? extends Oaf> actionPayloadClazz) {
+
+        return String.format("eu/dnetlib/dhp/actionmanager/promote/input/action_payload/%s_table/%s.json",
+                rowClazz.getSimpleName().toLowerCase(), actionPayloadClazz.getSimpleName().toLowerCase());
+    }
+
+    private static Dataset<String> readActionPayloadFromJsonDump(String path) {
+        return spark
+                .read()
+                .textFile(path);
+    }
+
+    private static void writeActionPayloadAsJobInput(Dataset<String> actionPayloadDS,
+                                                     String path) {
+        actionPayloadDS
+                .withColumnRenamed("value", "payload")
+                .write()
+                .parquet(path);
+    }
+
+    private static <G extends Oaf> Dataset<G> readGraphTableFromJobOutput(String path,
+                                                                          Class<G> rowClazz) {
+        return spark
+                .read()
+                .textFile(path)
+                .map((MapFunction<String, G>) json -> OBJECT_MAPPER.readValue(json, rowClazz), Encoders.bean(rowClazz));
+    }
+
+    private static String resultFileLocation(MergeAndGet.Strategy strategy,
+                                             Class<? extends Oaf> rowClazz,
+                                             Class<? extends Oaf> actionPayloadClazz) {
+        return String
+                .format("eu/dnetlib/dhp/actionmanager/promote/output/graph/%s/%s/%s_action_payload/result.json",
+                        strategy.name().toLowerCase(), rowClazz.getSimpleName().toLowerCase(), actionPayloadClazz.getSimpleName().toLowerCase());
+    }
+}

dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadFunctionsTest.java

@@ -0,0 +1,314 @@
+package eu.dnetlib.dhp.actionmanager.promote;
+
+import eu.dnetlib.dhp.common.FunctionalInterfaceSupport.SerializableSupplier;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Nested;
+import org.junit.jupiter.api.Test;
+
+import java.util.Arrays;
+import java.util.List;
+import java.util.Objects;
+import java.util.function.BiFunction;
+import java.util.function.Function;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertThrows;
+
+public class PromoteActionPayloadFunctionsTest {
+
+    private static SparkSession spark;
+
+    @BeforeAll
+    public static void beforeAll() {
+        SparkConf conf = new SparkConf();
+        conf.setMaster("local");
+        conf.setAppName(PromoteActionPayloadFunctionsTest.class.getSimpleName());
+        conf.set("spark.driver.host", "localhost");
+        spark = SparkSession.builder().config(conf).getOrCreate();
+    }
+
+    @AfterAll
+    public static void afterAll() {
+        spark.stop();
+    }
+
+    @Nested
+    class JoinTableWithActionPayloadAndMerge {
+
+        @Test
+        public void shouldThrowWhenTableTypeIsNotSubtypeOfActionPayloadType() {
+            // given
+            class OafImpl extends Oaf {
+            }
+
+            // when
+            assertThrows(RuntimeException.class, () ->
+                    PromoteActionPayloadFunctions
+                            .joinGraphTableWithActionPayloadAndMerge(null,
+                                    null,
+                                    null,
+                                    null,
+                                    null,
+                                    OafImplSubSub.class,
+                                    OafImpl.class
+                            ));
+        }
+
+        @Test
+        public void shouldRunProperlyWhenActionPayloadTypeAndTableTypeAreTheSame() {
+            // given
+            String id0 = "id0";
+            String id1 = "id1";
+            String id2 = "id2";
+            String id3 = "id3";
+            String id4 = "id4";
+            List<OafImplSubSub> rowData = Arrays.asList(
+                    createOafImplSubSub(id0),
+                    createOafImplSubSub(id1),
+                    createOafImplSubSub(id2),
+                    createOafImplSubSub(id3)
+            );
+            Dataset<OafImplSubSub> rowDS = spark.createDataset(rowData, Encoders.bean(OafImplSubSub.class));
+
+            List<OafImplSubSub> actionPayloadData = Arrays.asList(
+                    createOafImplSubSub(id1),
+                    createOafImplSubSub(id2), createOafImplSubSub(id2),
+                    createOafImplSubSub(id3), createOafImplSubSub(id3), createOafImplSubSub(id3),
+                    createOafImplSubSub(id4), createOafImplSubSub(id4), createOafImplSubSub(id4), createOafImplSubSub(id4)
+            );
+            Dataset<OafImplSubSub> actionPayloadDS = spark.createDataset(actionPayloadData, Encoders.bean(OafImplSubSub.class));
+
+            SerializableSupplier<Function<OafImplSubSub, String>> rowIdFn = () -> OafImplRoot::getId;
+            SerializableSupplier<Function<OafImplSubSub, String>> actionPayloadIdFn = () -> OafImplRoot::getId;
+            SerializableSupplier<BiFunction<OafImplSubSub, OafImplSubSub, OafImplSubSub>> mergeAndGetFn = () -> (x, y) -> {
+                x.merge(y);
+                return x;
+            };
+
+            // when
+            List<OafImplSubSub> results = PromoteActionPayloadFunctions
+                    .joinGraphTableWithActionPayloadAndMerge(rowDS,
+                            actionPayloadDS,
+                            rowIdFn,
+                            actionPayloadIdFn,
+                            mergeAndGetFn,
+                            OafImplSubSub.class,
+                            OafImplSubSub.class
+                    )
+                    .collectAsList();
+
+            // then
+            assertEquals(11, results.size());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id0)).count());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id1)).count());
+            assertEquals(2, results.stream().filter(x -> x.getId().equals(id2)).count());
+            assertEquals(3, results.stream().filter(x -> x.getId().equals(id3)).count());
+            assertEquals(4, results.stream().filter(x -> x.getId().equals(id4)).count());
+
+            results.forEach(result -> {
+                switch (result.getId()) {
+                    case "id0":
+                        assertEquals(1, result.getMerged());
+                        break;
+                    case "id1":
+                    case "id2":
+                    case "id3":
+                        assertEquals(2, result.getMerged());
+                        break;
+                    case "id4":
+                        assertEquals(1, result.getMerged());
+                        break;
+                    default:
+                        throw new RuntimeException();
+                }
+            });
+        }
+
+        @Test
+        public void shouldRunProperlyWhenActionPayloadTypeIsSuperTypeOfTableType() {
+            // given
+            String id0 = "id0";
+            String id1 = "id1";
+            String id2 = "id2";
+            String id3 = "id3";
+            String id4 = "id4";
+            List<OafImplSubSub> rowData = Arrays.asList(
+                    createOafImplSubSub(id0),
+                    createOafImplSubSub(id1),
+                    createOafImplSubSub(id2),
+                    createOafImplSubSub(id3)
+            );
+            Dataset<OafImplSubSub> rowDS = spark.createDataset(rowData, Encoders.bean(OafImplSubSub.class));
+
+            List<OafImplSub> actionPayloadData = Arrays.asList(
+                    createOafImplSub(id1),
+                    createOafImplSub(id2), createOafImplSub(id2),
+                    createOafImplSub(id3), createOafImplSub(id3), createOafImplSub(id3),
+                    createOafImplSub(id4), createOafImplSub(id4), createOafImplSub(id4), createOafImplSub(id4)
+            );
+            Dataset<OafImplSub> actionPayloadDS = spark.createDataset(actionPayloadData, Encoders.bean(OafImplSub.class));
+
+            SerializableSupplier<Function<OafImplSubSub, String>> rowIdFn = () -> OafImplRoot::getId;
+            SerializableSupplier<Function<OafImplSub, String>> actionPayloadIdFn = () -> OafImplRoot::getId;
+            SerializableSupplier<BiFunction<OafImplSubSub, OafImplSub, OafImplSubSub>> mergeAndGetFn = () -> (x, y) -> {
+                x.merge(y);
+                return x;
+            };
+
+            // when
+            List<OafImplSubSub> results = PromoteActionPayloadFunctions
+                    .joinGraphTableWithActionPayloadAndMerge(rowDS,
+                            actionPayloadDS,
+                            rowIdFn,
+                            actionPayloadIdFn,
+                            mergeAndGetFn,
+                            OafImplSubSub.class,
+                            OafImplSub.class
+                    )
+                    .collectAsList();
+
+            // then
+            assertEquals(7, results.size());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id0)).count());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id1)).count());
+            assertEquals(2, results.stream().filter(x -> x.getId().equals(id2)).count());
+            assertEquals(3, results.stream().filter(x -> x.getId().equals(id3)).count());
+            assertEquals(0, results.stream().filter(x -> x.getId().equals(id4)).count());
+
+            results.forEach(result -> {
+                switch (result.getId()) {
+                    case "id0":
+                        assertEquals(1, result.getMerged());
+                        break;
+                    case "id1":
+                    case "id2":
+                    case "id3":
+                        assertEquals(2, result.getMerged());
+                        break;
+                    default:
+                        throw new RuntimeException();
+                }
+            });
+        }
+
+    }
+
+    @Nested
+    class GroupTableByIdAndMerge {
+
+        @Test
+        public void shouldRunProperly() {
+            // given
+            String id1 = "id1";
+            String id2 = "id2";
+            String id3 = "id3";
+            List<OafImplSubSub> rowData = Arrays.asList(
+                    createOafImplSubSub(id1),
+                    createOafImplSubSub(id2), createOafImplSubSub(id2),
+                    createOafImplSubSub(id3), createOafImplSubSub(id3), createOafImplSubSub(id3)
+            );
+            Dataset<OafImplSubSub> rowDS = spark.createDataset(rowData, Encoders.bean(OafImplSubSub.class));
+
+            SerializableSupplier<Function<OafImplSubSub, String>> rowIdFn = () -> OafImplRoot::getId;
+            SerializableSupplier<BiFunction<OafImplSubSub, OafImplSubSub, OafImplSubSub>> mergeAndGetFn = () -> (x, y) -> {
+                x.merge(y);
+                return x;
+            };
+            SerializableSupplier<OafImplSubSub> zeroFn = OafImplSubSub::new;
+            SerializableSupplier<Function<OafImplSubSub, Boolean>> isNotZeroFn = () -> x -> Objects.nonNull(x.getId());
+
+            // when
+            List<OafImplSubSub> results = PromoteActionPayloadFunctions
+                    .groupGraphTableByIdAndMerge(rowDS,
+                            rowIdFn,
+                            mergeAndGetFn,
+                            zeroFn,
+                            isNotZeroFn,
+                            OafImplSubSub.class)
+                    .collectAsList();
+
+            // then
+            assertEquals(3, results.size());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id1)).count());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id2)).count());
+            assertEquals(1, results.stream().filter(x -> x.getId().equals(id3)).count());
+
+            results.forEach(result -> {
+                switch (result.getId()) {
+                    case "id1":
+                        assertEquals(1, result.getMerged());
+                        break;
+                    case "id2":
+                        assertEquals(2, result.getMerged());
+                        break;
+                    case "id3":
+                        assertEquals(3, result.getMerged());
+                        break;
+                    default:
+                        throw new RuntimeException();
+                }
+            });
+        }
+
+    }
+
+    public static class OafImplRoot extends Oaf {
+        private String id;
+        private int merged = 1;
+
+        public void merge(OafImplRoot e) {
+            merged += e.merged;
+        }
+
+        public String getId() {
+            return id;
+        }
+
+        public void setId(String id) {
+            this.id = id;
+        }
+
+        public int getMerged() {
+            return merged;
+        }
+
+        public void setMerged(int merged) {
+            this.merged = merged;
+        }
+    }
+
+    public static class OafImplSub extends OafImplRoot {
+
+        @Override
+        public void merge(OafImplRoot e) {
+            super.merge(e);
+        }
+    }
+
+    private static OafImplSub createOafImplSub(String id) {
+        OafImplSub x = new OafImplSub();
+        x.setId(id);
+        return x;
+    }
+
+    public static class OafImplSubSub extends OafImplSub {
+
+        @Override
+        public void merge(OafImplRoot e) {
+            super.merge(e);
+        }
+    }
+
+    private static OafImplSubSub createOafImplSubSub(String id) {
+        OafImplSubSub x = new OafImplSubSub();
+        x.setId(id);
+        return x;
+    }
+
+}

dhp-workflows/dhp-actionmanager/src/test/resources/eu/dnetlib/dhp/actionmanager/promote/input/action_payload/dataset_table/result.json

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+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":true,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|MetisRadboud::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|dedup_wf_001::8de0f5a712997aafe0d794a53e51b75a"}
+{"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|MetisRadboud::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::b58bdbe8ae5acead04fc76777d2f8017"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|NARCIS__cris::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::c978e29d3b2ddf4f0c2b6e60d6613426"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|OpenstarTs__::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::fc7459b8fed8c0d47947fe04275251c0"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|UnityFVG____::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::89bab7c5a227fc27b2b9cadf475a6b71"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|VTTRsInSsCrs::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::735915884eb439d42953372eaf934782"}

dhp-workflows/dhp-actionmanager/src/test/resources/eu/dnetlib/dhp/actionmanager/promote/output/graph/merge_from_and_get/relation/relation_action_payload/result.json

@@ -0,0 +1,10 @@
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::d0bbea1f5bed5864d1904eb602e608a6"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|OpenstarTs__::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::fc7459b8fed8c0d47947fe04275251c0"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|NARCIS__cris::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::c978e29d3b2ddf4f0c2b6e60d6613426"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|MetisRadboud::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::b58bdbe8ae5acead04fc76777d2f8017"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":true,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|MetisRadboud::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|dedup_wf_001::8de0f5a712997aafe0d794a53e51b75a"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|UnityFVG____::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::89bab7c5a227fc27b2b9cadf475a6b71"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|4ScienceCRIS::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::007a4870b31056f89b768cf508e1538e"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|VTTRsInSsCrs::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|openaire____::735915884eb439d42953372eaf934782"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":true,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556","subRelType":"provision","target":"20|dedup_wf_001::9ea9c0996c87e1dc7fc69f94b5ed0010"}
+{"collectedFrom":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":0,"relClass":"provides","relType":"datasourceOrganization","source":"10|CSC_________::a2b9ce8435390bcbfc05f3cae3948747","subRelType":"provision","target":"20|openaire____::c24a458004a31f9687089ea3d249de51"}

dhp-workflows/dhp-aggregation/pom.xml

@@ -99,23 +99,11 @@
             <groupId>jaxen</groupId>
             <artifactId>jaxen</artifactId>
         </dependency>
-        
-        <dependency>
-			<groupId>org.mongodb</groupId>
-			<artifactId>mongo-java-driver</artifactId>
-		</dependency>
-
 
         <dependency>
             <groupId>org.apache.hadoop</groupId>
             <artifactId>hadoop-distcp</artifactId>
         </dependency>
-		
-		<dependency>
-            <groupId>org.postgresql</groupId>
-            <artifactId>postgresql</artifactId>
-            <version>42.2.10</version>
-        </dependency>
 
     </dependencies>
 

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/migration/step3/DispatchEntitiesApplication.java

@@ -1,71 +0,0 @@
-package eu.dnetlib.dhp.migration.step3;
-
-import org.apache.commons.io.IOUtils;
-import org.apache.commons.lang3.StringUtils;
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-import org.apache.hadoop.io.compress.GzipCodec;
-import org.apache.spark.api.java.JavaSparkContext;
-import org.apache.spark.sql.SparkSession;
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.migration.step1.MigrateMongoMdstoresApplication;
-import eu.dnetlib.dhp.schema.oaf.Dataset;
-import eu.dnetlib.dhp.schema.oaf.Datasource;
-import eu.dnetlib.dhp.schema.oaf.Organization;
-import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
-import eu.dnetlib.dhp.schema.oaf.Project;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Software;
-
-public class DispatchEntitiesApplication {
-
-	private static final Log log = LogFactory.getLog(DispatchEntitiesApplication.class);
-
-	public static void main(final String[] args) throws Exception {
-		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
-				IOUtils.toString(MigrateMongoMdstoresApplication.class
-						.getResourceAsStream("/eu/dnetlib/dhp/migration/dispatch_entities_parameters.json")));
-		parser.parseArgument(args);
-
-		try (final SparkSession spark = newSparkSession(parser); final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext())) {
-
-			final String sourcePath = parser.get("sourcePath");
-			final String targetPath = parser.get("graphRawPath");
-
-			processEntity(sc, Publication.class, sourcePath, targetPath);
-			processEntity(sc, Dataset.class, sourcePath, targetPath);
-			processEntity(sc, Software.class, sourcePath, targetPath);
-			processEntity(sc, OtherResearchProduct.class, sourcePath, targetPath);
-			processEntity(sc, Datasource.class, sourcePath, targetPath);
-			processEntity(sc, Organization.class, sourcePath, targetPath);
-			processEntity(sc, Project.class, sourcePath, targetPath);
-			processEntity(sc, Relation.class, sourcePath, targetPath);
-		}
-	}
-
-	private static SparkSession newSparkSession(final ArgumentApplicationParser parser) {
-		return SparkSession
-				.builder()
-				.appName(DispatchEntitiesApplication.class.getSimpleName())
-				.master(parser.get("master"))
-				.getOrCreate();
-	}
-
-	private static void processEntity(final JavaSparkContext sc, final Class<?> clazz, final String sourcePath, final String targetPath) {
-		final String type = clazz.getSimpleName().toLowerCase();
-
-		log.info(String.format("Processing entities (%s) in file: %s", type, sourcePath));
-
-		sc.textFile(sourcePath)
-				.filter(l -> isEntityType(l, type))
-				.map(l -> StringUtils.substringAfter(l, "|"))
-				.saveAsTextFile(targetPath + "/" + type, GzipCodec.class); // use repartition(XXX) ???
-	}
-
-	private static boolean isEntityType(final String line, final String type) {
-		return StringUtils.substringBefore(line, "|").equalsIgnoreCase(type);
-	}
-
-}

dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/migration/wfs/regular_all_steps/oozie_app/workflow.xml

@@ -1,197 +0,0 @@
-<workflow-app name="import regular entities as Graph (all steps)" xmlns="uri:oozie:workflow:0.5">
-
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <value>/tmp/dhp_migration</value>
-            <description>the base path to store temporary intermediate data</description>
-        </property>
-        <property>
-            <name>graphBasePath</name>
-            <description>the target path to store raw graph</description>
-        </property>
-        <property>
-            <name>reuseContent</name>
-            <value>false</value>
-            <description>should import content from the aggregator or reuse a previous version</description>
-        </property>
-        <property>
-            <name>postgresURL</name>
-            <description>the postgres URL to access to the database</description>
-        </property>
-        <property>
-            <name>postgresUser</name>
-            <description>the user postgres</description>
-        </property>
-        <property>
-            <name>postgresPassword</name>
-            <description>the password postgres</description>
-        </property>
-        <property>
-            <name>mongoURL</name>
-            <description>mongoDB url, example: mongodb://[username:password@]host[:port]</description>
-        </property>
-        <property>
-            <name>mongoDb</name>
-            <description>mongo database</description>
-        </property>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-    </parameters>
-
-    <global>
-        <job-tracker>${jobTracker}</job-tracker>
-        <name-node>${nameNode}</name-node>
-        <configuration>
-            <property>
-                <name>mapreduce.job.queuename</name>
-                <value>${queueName}</value>
-            </property>
-            <property>
-                <name>oozie.launcher.mapred.job.queue.name</name>
-                <value>${oozieLauncherQueueName}</value>
-            </property>
-        </configuration>
-    </global>
-
-	<start to="ReuseContent"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <decision name="ReuseContent">
-        <switch>
-            <case to="ResetWorkingPath">${wf:conf('reuseContent') eq false}</case>
-            <case to="ResetAllEntitiesPath">${wf:conf('reuseContent') eq true}</case>
-            <default to="ResetWorkingPath"/>
-        </switch>
-    </decision>
-
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path="${workingPath}"/>
-            <mkdir path="${workingPath}"/>
-        </fs>
-        <ok to="ImportDB"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ImportDB">
-        <java>
-            <main-class>eu.dnetlib.dhp.migration.step1.MigrateDbEntitiesApplication</main-class>
-            <arg>-p</arg><arg>${workingPath}/db_records</arg>
-            <arg>-pgurl</arg><arg>${postgresURL}</arg>
-            <arg>-pguser</arg><arg>${postgresUser}</arg>
-            <arg>-pgpasswd</arg><arg>${postgresPassword}</arg>
-        </java>
-        <ok to="ImportODF"/>
-        <error to="Kill"/>
-    </action>
-    
-    <action name="ImportODF">
-        <java>
-            <main-class>eu.dnetlib.dhp.migration.step1.MigrateMongoMdstoresApplication</main-class>
-            <arg>-p</arg><arg>${workingPath}/odf_records</arg>
-            <arg>-mongourl</arg><arg>${mongoURL}</arg>
-            <arg>-mongodb</arg><arg>${mongoDb}</arg>
-            <arg>-f</arg><arg>ODF</arg>
-            <arg>-l</arg><arg>store</arg>
-            <arg>-i</arg><arg>cleaned</arg>
-        </java>
-        <ok to="ImportOAF"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ImportOAF">
-        <java>
-            <main-class>eu.dnetlib.dhp.migration.step1.MigrateMongoMdstoresApplication</main-class>
-            <arg>-p</arg><arg>${workingPath}/oaf_records</arg>
-            <arg>-mongourl</arg><arg>${mongoURL}</arg>
-            <arg>-mongodb</arg><arg>${mongoDb}</arg>
-            <arg>-f</arg><arg>OAF</arg>
-            <arg>-l</arg><arg>store</arg>
-            <arg>-i</arg><arg>cleaned</arg>
-        </java>
-        <ok to="ResetAllEntitiesPath"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ResetAllEntitiesPath">
-        <fs>
-            <delete path="${workingPath}/all_entities"/>
-        </fs>
-        <ok to="GenerateEntities"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="GenerateEntities">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>GenerateEntities</name>
-            <class>eu.dnetlib.dhp.migration.step2.GenerateEntitiesApplication</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory ${sparkExecutorMemory}
-                --executor-cores ${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners="com.cloudera.spark.lineage.NavigatorAppListener"
-                --conf spark.sql.queryExecutionListeners="com.cloudera.spark.lineage.NavigatorQueryListener"
-                --conf spark.sql.warehouse.dir="/user/hive/warehouse"
-            </spark-opts>
-            <arg>-mt</arg> <arg>yarn-cluster</arg>
-            <arg>-s</arg><arg>${workingPath}/db_records,${workingPath}/oaf_records,${workingPath}/odf_records</arg>
-            <arg>-t</arg><arg>${workingPath}/all_entities</arg>
-            <arg>-pgurl</arg><arg>${postgresURL}</arg>
-            <arg>-pguser</arg><arg>${postgresUser}</arg>
-            <arg>-pgpasswd</arg><arg>${postgresPassword}</arg>
-        </spark>
-        <ok to="ResetGraphPath"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ResetGraphPath">
-        <fs>
-            <delete path="${graphBasePath}/graph_raw"/>
-            <mkdir path="${graphBasePath}/graph_raw"/>
-        </fs>
-        <ok to="GenerateGraph"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="GenerateGraph">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>GenerateGraph</name>
-            <class>eu.dnetlib.dhp.migration.step3.DispatchEntitiesApplication</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory ${sparkExecutorMemory}
-                --executor-cores ${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners="com.cloudera.spark.lineage.NavigatorAppListener"
-                --conf spark.sql.queryExecutionListeners="com.cloudera.spark.lineage.NavigatorQueryListener"
-                --conf spark.sql.warehouse.dir="/user/hive/warehouse"
-            </spark-opts>
-            <arg>-mt</arg> <arg>yarn-cluster</arg>
-            <arg>-s</arg><arg>${workingPath}/all_entities</arg>
-            <arg>-g</arg><arg>${graphBasePath}/graph_raw</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>  
-
-    <end name="End"/>
-</workflow-app>

dhp-workflows/dhp-graph-mapper/pom.xml

@@ -40,6 +40,7 @@
             <artifactId>dhp-schemas</artifactId>
             <version>${project.version}</version>
         </dependency>
+
         <dependency>
             <groupId>com.jayway.jsonpath</groupId>
             <artifactId>json-path</artifactId>
@@ -48,6 +49,18 @@
             <groupId>org.mongodb</groupId>
             <artifactId>mongo-java-driver</artifactId>
         </dependency>
+        <dependency>
+            <groupId>dom4j</groupId>
+            <artifactId>dom4j</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>jaxen</groupId>
+            <artifactId>jaxen</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.postgresql</groupId>
+            <artifactId>postgresql</artifactId>
+        </dependency>
 
     </dependencies>
 

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/GraphHiveImporterJob.java

@@ -0,0 +1,69 @@
+package eu.dnetlib.dhp.oa.graph;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Optional;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+public class GraphHiveImporterJob {
+
+    private static final Logger log = LoggerFactory.getLogger(GraphHiveImporterJob.class);
+
+    public static void main(String[] args) throws Exception {
+
+        final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+                IOUtils.toString(GraphHiveImporterJob.class.getResourceAsStream(
+                        "/eu/dnetlib/dhp/oa/graph/input_graph_hive_parameters.json")));
+        parser.parseArgument(args);
+
+        Boolean isSparkSessionManaged = Optional
+                .ofNullable(parser.get("isSparkSessionManaged"))
+                .map(Boolean::valueOf)
+                .orElse(Boolean.TRUE);
+        log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+        String inputPath = parser.get("inputPath");
+        log.info("inputPath: {}", inputPath);
+
+        String hiveMetastoreUris = parser.get("hiveMetastoreUris");
+        log.info("hiveMetastoreUris: {}", hiveMetastoreUris);
+
+        String hiveDbName = parser.get("hiveDbName");
+        log.info("hiveDbName: {}", hiveDbName);
+
+        SparkConf conf = new SparkConf();
+        conf.set("hive.metastore.uris", hiveMetastoreUris);
+
+        runWithSparkHiveSession(conf, isSparkSessionManaged,
+                spark -> loadGraphAsHiveDB(spark, inputPath, hiveDbName));
+    }
+
+    // protected for testing
+    private static void loadGraphAsHiveDB(SparkSession spark, String inputPath, String hiveDbName) {
+
+        spark.sql(String.format("DROP DATABASE IF EXISTS %s CASCADE", hiveDbName));
+        spark.sql(String.format("CREATE DATABASE IF NOT EXISTS %s", hiveDbName));
+
+        final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
+        // Read the input file and convert it into RDD of serializable object
+        ModelSupport.oafTypes.forEach((name, clazz) -> spark.createDataset(sc.textFile(inputPath + "/" + name)
+                .map(s -> new ObjectMapper().readValue(s, clazz))
+                .rdd(), Encoders.bean(clazz))
+                .write()
+                .mode(SaveMode.Overwrite)
+                .saveAsTable(hiveDbName + "." + name));
+    }
+
+}

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/GraphMappingUtils.java

@@ -1,31 +0,0 @@
-package eu.dnetlib.dhp.oa.graph;
-
-import java.util.Map;
-
-import com.google.common.collect.Maps;
-
-import eu.dnetlib.dhp.schema.oaf.Dataset;
-import eu.dnetlib.dhp.schema.oaf.Datasource;
-import eu.dnetlib.dhp.schema.oaf.Organization;
-import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
-import eu.dnetlib.dhp.schema.oaf.Project;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Software;
-
-public class GraphMappingUtils {
-
-	public final static Map<String, Class> types = Maps.newHashMap();
-
-	static {
-		types.put("datasource", Datasource.class);
-		types.put("organization", Organization.class);
-		types.put("project", Project.class);
-		types.put("dataset", Dataset.class);
-		types.put("otherresearchproduct", OtherResearchProduct.class);
-		types.put("software", Software.class);
-		types.put("publication", Publication.class);
-		types.put("relation", Relation.class);
-	}
-
-}

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/SparkGraphImporterJob.java

@@ -1,61 +0,0 @@
-package eu.dnetlib.dhp.oa.graph;
-
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import org.apache.commons.io.IOUtils;
-import org.apache.spark.SparkConf;
-import org.apache.spark.api.java.JavaSparkContext;
-import org.apache.spark.sql.Encoders;
-import org.apache.spark.sql.SaveMode;
-import org.apache.spark.sql.SparkSession;
-
-public class SparkGraphImporterJob {
-
-    public static void main(String[] args) throws Exception {
-
-        final ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils.toString(SparkGraphImporterJob.class.getResourceAsStream(
-                        "/eu/dnetlib/dhp/oa/graph/input_graph_parameters.json")));
-        parser.parseArgument(args);
-
-        new SparkGraphImporterJob().run(parser);
-    }
-
-    private void run(ArgumentApplicationParser parser) {
-        try(SparkSession spark = getSparkSession(parser)) {
-
-            final String inputPath = parser.get("sourcePath");
-            final String hiveDbName = parser.get("hive_db_name");
-
-            runWith(spark, inputPath, hiveDbName);
-        }
-    }
-
-    // protected for testing
-    protected void runWith(SparkSession spark, String inputPath, String hiveDbName) {
-
-        spark.sql(String.format("DROP DATABASE IF EXISTS %s CASCADE", hiveDbName));
-        spark.sql(String.format("CREATE DATABASE IF NOT EXISTS %s", hiveDbName));
-
-        final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
-        // Read the input file and convert it into RDD of serializable object
-        GraphMappingUtils.types.forEach((name, clazz) -> spark.createDataset(sc.textFile(inputPath + "/" + name)
-                .map(s -> new ObjectMapper().readValue(s, clazz))
-                .rdd(), Encoders.bean(clazz))
-                .write()
-                .mode(SaveMode.Overwrite)
-                .saveAsTable(hiveDbName + "." + name));
-    }
-
-    private static SparkSession getSparkSession(ArgumentApplicationParser parser) {
-        SparkConf conf = new SparkConf();
-        conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
-        return SparkSession
-                .builder()
-                .appName(SparkGraphImporterJob.class.getSimpleName())
-                .master(parser.get("master"))
-                .config(conf)
-                .enableHiveSupport()
-                .getOrCreate();
-    }
-}

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java

@@ -1,45 +1,15 @@
-package eu.dnetlib.dhp.migration.step2;
+package eu.dnetlib.dhp.oa.graph.raw;
-
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.createOpenaireId;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.dataInfo;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.field;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.journal;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.keyValue;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.listFields;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.oaiIProvenance;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.qualifier;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.structuredProperty;
-
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Date;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
 
+import eu.dnetlib.dhp.schema.oaf.*;
 import org.apache.commons.lang3.StringUtils;
 import org.dom4j.Document;
 import org.dom4j.DocumentFactory;
 import org.dom4j.DocumentHelper;
 import org.dom4j.Node;
 
-import eu.dnetlib.dhp.schema.oaf.Author;
+import java.util.*;
-import eu.dnetlib.dhp.schema.oaf.DataInfo;
+
-import eu.dnetlib.dhp.schema.oaf.Dataset;
+import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.*;
-import eu.dnetlib.dhp.schema.oaf.Field;
-import eu.dnetlib.dhp.schema.oaf.GeoLocation;
-import eu.dnetlib.dhp.schema.oaf.Instance;
-import eu.dnetlib.dhp.schema.oaf.Journal;
-import eu.dnetlib.dhp.schema.oaf.KeyValue;
-import eu.dnetlib.dhp.schema.oaf.OAIProvenance;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Qualifier;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Result;
-import eu.dnetlib.dhp.schema.oaf.Software;
-import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
 
 public abstract class AbstractMdRecordToOafMapper {
 

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/DispatchEntitiesApplication.java

@@ -0,0 +1,94 @@
+package eu.dnetlib.dhp.oa.graph.raw;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.apache.hadoop.io.compress.GzipCodec;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.Optional;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+public class DispatchEntitiesApplication {
+
+	private static final Logger log = LoggerFactory.getLogger(DispatchEntitiesApplication.class);
+
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	public static void main(final String[] args) throws Exception {
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+				IOUtils.toString(MigrateMongoMdstoresApplication.class
+						.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/dispatch_entities_parameters.json")));
+		parser.parseArgument(args);
+
+		Boolean isSparkSessionManaged = Optional
+				.ofNullable(parser.get("isSparkSessionManaged"))
+				.map(Boolean::valueOf)
+				.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		final String sourcePath = parser.get("sourcePath");
+		final String targetPath = parser.get("graphRawPath");
+
+		SparkConf conf = new SparkConf();
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> {
+			removeOutputDir(spark, targetPath);
+
+			processEntity(spark, Publication.class, sourcePath, targetPath);
+			processEntity(spark, Dataset.class, sourcePath, targetPath);
+			processEntity(spark, Software.class, sourcePath, targetPath);
+			processEntity(spark, OtherResearchProduct.class, sourcePath, targetPath);
+			processEntity(spark, Datasource.class, sourcePath, targetPath);
+			processEntity(spark, Organization.class, sourcePath, targetPath);
+			processEntity(spark, Project.class, sourcePath, targetPath);
+			processEntity(spark, Relation.class, sourcePath, targetPath);
+		});
+	}
+
+	private static <T extends Oaf> void processEntity(final SparkSession spark, final Class<T> clazz, final String sourcePath, final String targetPath) {
+		final String type = clazz.getSimpleName().toLowerCase();
+
+		log.info(String.format("Processing entities (%s) in file: %s", type, sourcePath));
+
+		/*
+		spark.read()
+				.textFile(sourcePath)
+				.filter((FilterFunction<String>) value -> isEntityType(value, type))
+				.map((MapFunction<String, String>) value -> StringUtils.substringAfter(value, "|"), Encoders.STRING())
+				.map((MapFunction<String, T>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz))
+				.write()
+				.mode(SaveMode.Overwrite)
+				.parquet(targetPath + "/" + type);
+
+		 */
+
+		JavaSparkContext.fromSparkContext(spark.sparkContext())
+				.textFile(sourcePath)
+				.filter(l -> isEntityType(l, type))
+				.map(l -> StringUtils.substringAfter(l, "|"))
+				.saveAsTextFile(targetPath + "/" + type, GzipCodec.class); // use repartition(XXX) ???
+	}
+
+	private static boolean isEntityType(final String line, final String type) {
+		return StringUtils.substringBefore(line, "|").equalsIgnoreCase(type);
+	}
+
+	private static void removeOutputDir(SparkSession spark, String path) {
+		HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+	}
+
+}

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/GenerateEntitiesApplication.java

@@ -1,13 +1,10 @@
-package eu.dnetlib.dhp.migration.step2;
+package eu.dnetlib.dhp.oa.graph.raw;
-
-import java.io.IOException;
-import java.sql.SQLException;
-import java.util.Arrays;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.stream.Collectors;
 
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
+import eu.dnetlib.dhp.schema.oaf.*;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.logging.Log;
@@ -16,37 +13,38 @@ import org.apache.hadoop.fs.FileSystem;
 import org.apache.hadoop.fs.Path;
 import org.apache.hadoop.io.Text;
 import org.apache.hadoop.io.compress.GzipCodec;
+import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
 import org.apache.spark.sql.SparkSession;
-
+import org.slf4j.Logger;
-import com.fasterxml.jackson.databind.ObjectMapper;
+import org.slf4j.LoggerFactory;
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.migration.step1.MigrateMongoMdstoresApplication;
-import eu.dnetlib.dhp.migration.utils.DbClient;
-import eu.dnetlib.dhp.schema.oaf.Dataset;
-import eu.dnetlib.dhp.schema.oaf.Datasource;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.Organization;
-import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
-import eu.dnetlib.dhp.schema.oaf.Project;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Software;
 import scala.Tuple2;
 
+import java.io.IOException;
+import java.sql.SQLException;
+import java.util.*;
+import java.util.stream.Collectors;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
 public class GenerateEntitiesApplication {
 
-	private static final Log log = LogFactory.getLog(GenerateEntitiesApplication.class);
+	private static final Logger log = LoggerFactory.getLogger(GenerateEntitiesApplication.class);
 
 	public static void main(final String[] args) throws Exception {
 		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
 				IOUtils.toString(MigrateMongoMdstoresApplication.class
-						.getResourceAsStream("/eu/dnetlib/dhp/migration/generate_entities_parameters.json")));
+						.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/generate_entities_parameters.json")));
 
 		parser.parseArgument(args);
 
+		Boolean isSparkSessionManaged = Optional
+				.ofNullable(parser.get("isSparkSessionManaged"))
+				.map(Boolean::valueOf)
+				.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
 		final String sourcePaths = parser.get("sourcePaths");
 		final String targetPath = parser.get("targetPath");
 
@@ -56,31 +54,27 @@ public class GenerateEntitiesApplication {
 
 		final Map<String, String> code2name = loadClassNames(dbUrl, dbUser, dbPassword);
 
-		try (final SparkSession spark = newSparkSession(parser); final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext())) {
+		SparkConf conf = new SparkConf();
-			final List<String> existingSourcePaths = Arrays.stream(sourcePaths.split(",")).filter(p -> exists(sc, p)).collect(Collectors.toList());
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> {
-			generateEntities(sc, code2name, existingSourcePaths, targetPath);
+			removeOutputDir(spark, targetPath);
-		}
+			generateEntities(spark, code2name, sourcePaths, targetPath);
+		});
 	}
 
-	private static SparkSession newSparkSession(final ArgumentApplicationParser parser) {
+	private static void generateEntities(final SparkSession spark,
-		return SparkSession
-				.builder()
-				.appName(GenerateEntitiesApplication.class.getSimpleName())
-				.master(parser.get("master"))
-				.getOrCreate();
-	}
-
-	private static void generateEntities(final JavaSparkContext sc,
 			final Map<String, String> code2name,
-			final List<String> sourcePaths,
+			final String sourcePaths,
 			final String targetPath) {
 
+		JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+		final List<String> existingSourcePaths = Arrays.stream(sourcePaths.split(",")).filter(p -> exists(sc, p)).collect(Collectors.toList());
+
 		log.info("Generate entities from files:");
-		sourcePaths.forEach(log::info);
+		existingSourcePaths.forEach(log::info);
 
 		JavaRDD<String> inputRdd = sc.emptyRDD();
 
-		for (final String sp : sourcePaths) {
+		for (final String sp : existingSourcePaths) {
 			inputRdd = inputRdd.union(sc.sequenceFile(sp, Text.class, Text.class)
 					.map(k -> new Tuple2<>(k._1().toString(), k._2().toString()))
 					.map(k -> convertToListOaf(k._1(), k._2(), code2name))
@@ -88,7 +82,8 @@ public class GenerateEntitiesApplication {
 					.map(oaf -> oaf.getClass().getSimpleName().toLowerCase() + "|" + convertToJson(oaf)));
 		}
 
-		inputRdd.saveAsTextFile(targetPath, GzipCodec.class);
+		inputRdd
+				.saveAsTextFile(targetPath, GzipCodec.class);
 
 	}
 
@@ -163,11 +158,15 @@ public class GenerateEntitiesApplication {
 
 	private static boolean exists(final JavaSparkContext context, final String pathToFile) {
 		try {
-			final FileSystem hdfs = org.apache.hadoop.fs.FileSystem.get(context.hadoopConfiguration());
+			final FileSystem hdfs = FileSystem.get(context.hadoopConfiguration());
 			final Path path = new Path(pathToFile);
 			return hdfs.exists(path);
 		} catch (final IOException e) {
 			throw new RuntimeException(e);
 		}
 	}
+
+	private static void removeOutputDir(SparkSession spark, String path) {
+		HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+	}
 }

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MergeClaimsApplication.java

@@ -0,0 +1,159 @@
+package eu.dnetlib.dhp.oa.graph.raw;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
+import org.apache.hadoop.io.compress.GzipCodec;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import scala.Tuple2;
+import scala.reflect.ClassTag;
+import scala.reflect.ClassTag$;
+
+import java.util.Objects;
+import java.util.Optional;
+import java.util.function.Function;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+import static eu.dnetlib.dhp.schema.common.ModelSupport.isSubClass;
+
+public class MergeClaimsApplication {
+
+	private static final Logger log = LoggerFactory.getLogger(MergeClaimsApplication.class);
+
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	public static void main(final String[] args) throws Exception {
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+				IOUtils.toString(MigrateMongoMdstoresApplication.class
+						.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/merge_claims_parameters.json")));
+		parser.parseArgument(args);
+
+		Boolean isSparkSessionManaged = Optional
+				.ofNullable(parser.get("isSparkSessionManaged"))
+				.map(Boolean::valueOf)
+				.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		final String rawGraphPath = parser.get("rawGraphPath");
+		log.info("rawGraphPath: {}", rawGraphPath);
+
+		final String claimsGraphPath = parser.get("claimsGraphPath");
+		log.info("claimsGraphPath: {}", claimsGraphPath);
+
+		final String outputRawGaphPath = parser.get("outputRawGaphPath");
+		log.info("outputRawGaphPath: {}", outputRawGaphPath);
+
+		String graphTableClassName = parser.get("graphTableClassName");
+		log.info("graphTableClassName: {}", graphTableClassName);
+
+		Class<? extends Oaf> clazz = (Class<? extends Oaf>) Class.forName(graphTableClassName);
+
+		SparkConf conf = new SparkConf();
+		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+		conf.registerKryoClasses(ModelSupport.getOafModelClasses());
+
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> {
+			String type = clazz.getSimpleName().toLowerCase();
+
+			String rawPath = rawGraphPath + "/" + type;
+			String claimPath = claimsGraphPath + "/" + type;
+			String outPath = outputRawGaphPath + "/" + type;
+
+			removeOutputDir(spark, outPath);
+			mergeByType(spark, rawPath, claimPath, outPath, clazz);
+		});
+	}
+
+	private static <T extends Oaf> void mergeByType(SparkSession spark, String rawPath, String claimPath, String outPath, Class<T> clazz) {
+		Dataset<Tuple2<String, T>> raw = readFromPath(spark, rawPath, clazz)
+				.map((MapFunction<T, Tuple2<String, T>>) value -> new Tuple2<>(idFn().apply(value), value), Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
+
+		final JavaSparkContext jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+		Dataset<Tuple2<String, T>> claim = jsc.broadcast(readFromPath(spark, claimPath, clazz))
+				.getValue()
+				.map((MapFunction<T, Tuple2<String, T>>) value -> new Tuple2<>(idFn().apply(value), value), Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
+
+		/*
+		Dataset<Tuple2<String, T>> claim = readFromPath(spark, claimPath, clazz)
+				.map((MapFunction<T, Tuple2<String, T>>) value -> new Tuple2<>(idFn().apply(value), value), Encoders.tuple(Encoders.STRING(), Encoders.kryo(clazz)));
+		*/
+
+		raw.joinWith(claim, raw.col("_1").equalTo(claim.col("_1")), "full_outer")
+				.map((MapFunction<Tuple2<Tuple2<String, T>, Tuple2<String, T>>, T>) value -> {
+
+					Optional<Tuple2<String, T>> opRaw = Optional.ofNullable(value._1());
+					Optional<Tuple2<String, T>> opClaim = Optional.ofNullable(value._2());
+
+					return opRaw.isPresent() ? opRaw.get()._2() : opClaim.isPresent() ? opClaim.get()._2() : null;
+				}, Encoders.bean(clazz))
+				.filter(Objects::nonNull)
+				.map((MapFunction<T, String>) value -> OBJECT_MAPPER.writeValueAsString(value), Encoders.STRING())
+				.write()
+				.mode(SaveMode.Overwrite)
+				.option("compression", "gzip")
+				.text(outPath);
+	}
+
+	private static <T extends Oaf> Dataset<T> readFromPath(SparkSession spark, String path, Class<T> clazz) {
+		return spark.read()
+				.textFile(path)
+				.map((MapFunction<String, T>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz))
+				.filter((FilterFunction<T>) value -> Objects.nonNull(idFn().apply(value)));
+		/*
+		return spark.read()
+				.load(path)
+				.as(Encoders.bean(clazz))
+				.filter((FilterFunction<T>) value -> Objects.nonNull(idFn().apply(value)));
+		 */
+	}
+
+	private static void removeOutputDir(SparkSession spark, String path) {
+		HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+	}
+
+	private static <T extends Oaf> Function<T, String> idFn() {
+		return x -> {
+			if (isSubClass(x, Relation.class)) {
+				return idFnForRelation(x);
+			}
+			return idFnForOafEntity(x);
+		};
+	}
+
+	private static <T extends Oaf> String idFnForRelation(T t) {
+		Relation r = (Relation) t;
+		return Optional.ofNullable(r.getSource())
+				.map(source -> Optional.ofNullable(r.getTarget())
+						.map(target -> Optional.ofNullable(r.getRelType())
+								.map(relType -> Optional.ofNullable(r.getSubRelType())
+										.map(subRelType -> Optional.ofNullable(r.getRelClass())
+												.map(relClass -> String.join(source, target, relType, subRelType, relClass))
+												.orElse(String.join(source, target, relType, subRelType))
+										)
+										.orElse(String.join(source, target, relType))
+								)
+								.orElse(String.join(source, target))
+						)
+						.orElse(source)
+				)
+				.orElse(null);
+	}
+
+	private static <T extends Oaf> String idFnForOafEntity(T t) {
+		return ((OafEntity) t).getId();
+	}
+
+}

dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java

@@ -1,14 +1,13 @@
-package eu.dnetlib.dhp.migration.step1;
+package eu.dnetlib.dhp.oa.graph.raw;
 
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.asString;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.createOpenaireId;
+import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.dataInfo;
+import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.field;
+import eu.dnetlib.dhp.schema.oaf.*;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.journal;
+import org.apache.commons.io.IOUtils;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.listFields;
+import org.apache.commons.lang3.StringUtils;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.listKeyValues;
+import org.apache.commons.logging.Log;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.qualifier;
+import org.apache.commons.logging.LogFactory;
-import static eu.dnetlib.dhp.migration.utils.OafMapperUtils.structuredProperty;
 
 import java.io.Closeable;
 import java.io.IOException;
@@ -22,31 +21,7 @@ import java.util.List;
 import java.util.function.Consumer;
 import java.util.function.Function;
 
-import org.apache.commons.io.IOUtils;
+import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.*;
-import org.apache.commons.lang3.StringUtils;
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.migration.utils.AbstractMigrationApplication;
-import eu.dnetlib.dhp.migration.utils.DbClient;
-import eu.dnetlib.dhp.schema.oaf.Context;
-import eu.dnetlib.dhp.schema.oaf.DataInfo;
-import eu.dnetlib.dhp.schema.oaf.Dataset;
-import eu.dnetlib.dhp.schema.oaf.Datasource;
-import eu.dnetlib.dhp.schema.oaf.Field;
-import eu.dnetlib.dhp.schema.oaf.Journal;
-import eu.dnetlib.dhp.schema.oaf.KeyValue;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.Organization;
-import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
-import eu.dnetlib.dhp.schema.oaf.Project;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Qualifier;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Result;
-import eu.dnetlib.dhp.schema.oaf.Software;
-import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
 
 public class MigrateDbEntitiesApplication extends AbstractMigrationApplication implements Closeable {
 
@@ -61,7 +36,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 
 	public static void main(final String[] args) throws Exception {
 		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
-				IOUtils.toString(MigrateDbEntitiesApplication.class.getResourceAsStream("/eu/dnetlib/dhp/migration/migrate_db_entities_parameters.json")));
+				IOUtils.toString(MigrateDbEntitiesApplication.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
 
 		parser.parseArgument(args);
 
@@ -111,7 +86,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 	}
 
 	public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer) throws Exception {
-		final String sql = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/migration/sql/" + sqlFile));
+		final String sql = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
 
 		final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));