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moved stats computation in impala instead of hive

This commit is contained in:
Antonis Lempesis 2021-02-18 17:23:34 +02:00
parent b8e96c8ae7
commit 33c85d4e66
23 changed files with 179 additions and 429 deletions
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17
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizedb.sh Normal file
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@ -0,0 +1,17 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
export SOURCE=$1
export SHADOW=$2
echo "Updating shadow database"
impala-shell -q "invalidate metadata ${SOURCE}"
impala-shell -q "create database if not exists ${SHADOW}"
impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -f -
echo "Shadow db ready!"

18
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-shell.sh
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@ -1,18 +0,0 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
echo "Getting file from " $3
hdfs dfs -copyToLocal $3
echo "Running impala shell make the new database visible"
impala-shell -q "INVALIDATE METADATA;"
echo "Running impala shell to compute new table stats"
impala-shell -d $1 -f $2
echo "Impala shell finished"
rm $2

6
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
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@ -43,6 +43,6 @@ FROM ${external_stats_db_name}.concept;
------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
create table ${stats_db_name}.creation_date as create table ${stats_db_name}.creation_date as
select date_format(current_date(), 'dd-MM-yyyy') as date; select date_format(current_date(), 'dd-MM-yyyy') as date;
--
ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS FOR COLUMNS;

4
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
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@ -114,5 +114,5 @@ WHERE result_projects.id = result.id
AND result.type = 'publication' AND result.type = 'publication'
AND project.id = result_projects.project; AND project.id = result_projects.project;
ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS FOR COLUMNS;

24
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql
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@ -65,15 +65,15 @@ WHERE r.id = rd.id
AND r.bestlicence = 'Open Access' AND r.bestlicence = 'Open Access'
GROUP BY org.country; GROUP BY org.country;
ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS FOR COLUMNS;

18
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
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@ -57,12 +57,12 @@ UNION ALL
SELECT * FROM ${stats_db_name}.software_sources SELECT * FROM ${stats_db_name}.software_sources
UNION ALL UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources; SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
--
ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS FOR COLUMNS;

24
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
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@ -48,15 +48,15 @@ FROM (
from ${openaire_db_name}.datasource d from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id; WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;
ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS FOR COLUMNS;

18
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
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@ -34,12 +34,12 @@ union all
select * from ${stats_db_name}.software_refereed select * from ${stats_db_name}.software_refereed
union all union all
select * from ${stats_db_name}.otherresearchproduct_refereed; select * from ${stats_db_name}.otherresearchproduct_refereed;
--
ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS FOR COLUMNS;

20
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16.sql
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@ -79,13 +79,13 @@ join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
join ${stats_db_name}.organization o on o.id=dor.organization join ${stats_db_name}.organization o on o.id=dor.organization
where o.country is not null and o.country!=''; where o.country is not null and o.country!='';
ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS FOR COLUMNS;

6
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql
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@ -53,6 +53,6 @@ drop table if exists ${stats_db_name}.result;
drop view if exists ${stats_db_name}.result; drop view if exists ${stats_db_name}.result;
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp; create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
drop table ${stats_db_name}.result_tmp; drop table ${stats_db_name}.result_tmp;
--
ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS FOR COLUMNS;

14
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_6.sql
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@ -30,10 +30,10 @@ from rcount
group by rcount.pid; group by rcount.pid;
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture; create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
--
ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS FOR COLUMNS;

207
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step17.sql
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@ -1,207 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Shadow schema table exchange
------------------------------------------------------
------------------------------------------------------
-- Dropping old views
DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
-- Creating the shadow database, in case it doesn't exist
CREATE database IF NOT EXISTS ${stats_db_shadow_name};
-- Creating new views
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step18.sql
View File

@ -1,8 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
INVALIDATE METADATA ${stats_db_name};

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step19.sql
View File

@ -1,8 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
INVALIDATE METADATA ${stats_db_name};

36
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
View File

@ -93,21 +93,21 @@ FROM ${openaire_db_name}.publication p
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != "" WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and p.datainfo.deletedbyinference = false; and p.datainfo.deletedbyinference = false;
ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS FOR COLUMNS;

34
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql
View File

@ -93,20 +93,20 @@ SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subj
FROM ${openaire_db_name}.dataset p FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.subject) subjects AS subject LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false; where p.datainfo.deletedbyinference = false;
--
ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS FOR COLUMNS;

34
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql
View File

@ -93,20 +93,20 @@ SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subj
FROM ${openaire_db_name}.software p FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.subject) subjects AS subject LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false; where p.datainfo.deletedbyinference = false;
--
ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS FOR COLUMNS;

32
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
View File

@ -85,19 +85,19 @@ SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subj
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false; where p.datainfo.deletedbyinference = false;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS FOR COLUMNS;

20
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql
View File

@ -72,13 +72,13 @@ select distinct xpath_string(fund, '//funder/id') as id,
xpath_string(fund, '//funder/shortname') as shortname xpath_string(fund, '//funder/shortname') as shortname
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund; from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS FOR COLUMNS;

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
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@ -135,7 +135,7 @@ FROM ${stats_db_name}.result r
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id; JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS FOR COLUMNS;

16
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql
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@ -99,11 +99,11 @@ CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
SELECT datasource AS id, id AS result SELECT datasource AS id, id AS result
FROM ${stats_db_name}.result_datasources; FROM ${stats_db_name}.result_datasources;
ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS FOR COLUMNS;
ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS FOR COLUMNS;

4
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql
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@ -19,5 +19,5 @@ CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS
SELECT id AS project, organization as id SELECT id AS project, organization as id
FROM ${stats_db_name}.project_organizations; FROM ${stats_db_name}.project_organizations;
ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS; -- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS;
ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS FOR COLUMNS; -- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS FOR COLUMNS;

32
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
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@ -260,31 +260,6 @@
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param> <param>openaire_db_name=${openaire_db_name}</param>
</hive2> </hive2>
<ok to="Step17"/>
<error to="Kill"/>
</action>
<action name="Step17">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step17.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
</hive2>
<ok to="Step18"/>
<error to="Kill"/>
</action>
<action name="Step18">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec>
<argument>${stats_db_name}</argument>
<argument>step18.sql</argument>
<argument>${wf:appPath()}/scripts/step18.sql</argument>
<file>impala-shell.sh</file>
</shell>
<ok to="Step19"/> <ok to="Step19"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
@ -293,11 +268,10 @@
<shell xmlns="uri:oozie:shell-action:0.1"> <shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker> <job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node> <name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec> <exec>finalizedb.sh</exec>
<argument>stats_db_name</argument>
<argument>${stats_db_shadow_name}</argument> <argument>${stats_db_shadow_name}</argument>
<argument>step19.sql</argument> <file>finalizedb.sh</file>
<argument>${wf:appPath()}/scripts/step19.sql</argument>
<file>impala-shell.sh</file>
</shell> </shell>
<ok to="step20-createMonitorDB"/> <ok to="step20-createMonitorDB"/>
<error to="Kill"/> <error to="Kill"/>