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updated dnet workflow profile definitions

This commit is contained in:
Claudio Atzori 2022-01-21 13:59:46 +01:00
parent dd52bf1bb8
commit 2f385b3ac6
5 changed files with 398 additions and 67 deletions
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105
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/provision/00_beta_graph_complete_experiment.xml
View File

@ -4,7 +4,7 @@
<RESOURCE_TYPE value="WorkflowDSResourceType"/>
<RESOURCE_KIND value="WorkflowDSResources"/>
<RESOURCE_URI value=""/>
<DATE_OF_CREATION value="2021-12-23T14:32:39+00:00"/>
<DATE_OF_CREATION value="2022-01-11T20:04:48+00:00"/>
</HEADER>
<BODY>
<WORKFLOW_NAME>Graph processing [EXPERIMENT]</WORKFLOW_NAME>
@ -15,7 +15,7 @@
<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_BETA</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_BETA/content</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -51,6 +51,16 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setIterationNumbers" type="SetEnvParameter">
<DESCRIPTION>set the number of iteration in affiliation propagation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">iterations</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">1</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setMergedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the MERGED graph</DESCRIPTION>
<PARAMETERS>
@ -91,11 +101,21 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setGroupedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the GROUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">groupedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/05_graph_grouped</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setInferredGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/05_graph_inferred</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/06_graph_inferred</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -105,7 +125,7 @@
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/06_graph_dedup</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/07_graph_dedup</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -115,7 +135,7 @@
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/07_graph_consistent</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/08_graph_consistent</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -125,7 +145,7 @@
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/08_graph_orcid</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/09_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -135,7 +155,7 @@
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/09_graph_bulktagging</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/10_graph_bulktagging</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -145,7 +165,7 @@
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/10_graph_affiliation</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/11_graph_affiliation</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -155,7 +175,7 @@
<DESCRIPTION>Set the target path to store the AFFILIATION from SEMATIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationSemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/11_graph_affiliationsr</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/12_graph_affiliationsr</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -165,7 +185,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/12_graph_community_organization</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/13_graph_community_organization</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -175,7 +195,7 @@
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/13_graph_funding</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/14_graph_funding</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -185,7 +205,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/14_graph_community_sem_rel</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/15_graph_community_sem_rel</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -195,7 +215,7 @@
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/15_graph_country</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/16_graph_country</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -205,7 +225,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/16_graph_cleaned</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/17_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -215,7 +235,7 @@
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/17_graph_blacklisted</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/18_graph_blacklisted</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -548,14 +568,14 @@
'mongoURL' : 'mongodb://beta.services.openaire.eu',
'mongoDb' : 'mdstore',
'mdstoreManagerUrl' : 'https://beta.services.openaire.eu/mdstoremanager',
'postgresURL' : '',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : '',
'postgresPassword' : '',
'postgresOpenOrgsURL' : '',
'postgresOpenOrgsURL' : 'jdbc:postgresql://10.19.65.40:5432/oa_organizations',
'postgresOpenOrgsUser' : '',
'postgresOpenOrgsPassword' : '',
'shouldHashId' : 'true',
'importOpenorgs' : 'true',
'importOpenorgs' : 'false',
'workingDir' : '/tmp/beta_experiment/working_dir/beta_aggregator'
}
</PARAM>
@ -594,10 +614,10 @@
'mongoURL' : 'mongodb://services.openaire.eu',
'mongoDb' : 'mdstore',
'mdstoreManagerUrl' : 'https://services.openaire.eu/mdstoremanager',
'postgresURL' : '',
'postgresURL' : 'jdbc:postgresql://postgresql.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : '',
'postgresPassword' : '',
'postgresOpenOrgsURL' : '',
'postgresOpenOrgsURL' : 'jdbc:postgresql://10.19.65.39:5432/oa_organizations',
'postgresOpenOrgsUser' : '',
'postgresOpenOrgsPassword' : '',
'shouldHashId' : 'true',
@ -752,6 +772,30 @@
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphEntityGrouping"/>
</ARCS>
</NODE>
<NODE name="graphEntityGrouping" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'resolvedGraphPath',
'targetPath':'groupedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/group/oozie_app',
'workingDir' : '/tmp/beta_experiment/working_dir/grouping',
'sparkExecutorCores' : '4',
'sparkExecutorMemory' : '7G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="prepareIISActionSets"/>
</ARCS>
@ -867,9 +911,9 @@
<PARAM managedBy="system" name="mdStoreStoreLocationParam" required="true" type="string">import_mdstore_service_location</PARAM>
<PARAM managedBy="system" name="mdStoreDatasetParam" required="true" type="string">import_dataset_mdstore_ids_csv</PARAM>
<PARAM managedBy="system" name="oozieWfAppPathParam" required="true" type="string">oozie.wf.application.path</PARAM>
<PARAM managedBy="user" name="oozieWfAppPath" required="true" type="string">/lib/iis/primary/snapshots/2021-09-24</PARAM>
<PARAM managedBy="user" name="oozieWfAppPath" required="true" type="string">/lib/iis/primary/snapshots/2021-12-09</PARAM>
<PARAM function="validValues(['IIS','DM'])" managedBy="user" name="clusterName" required="true" type="string">IIS</PARAM>
<PARAM managedBy="user" name="importHbaseDumpLocation" required="true" type="string">/tmp/beta_inference/graph/07_graph_cleaned</PARAM>
<PARAM managedBy="user" name="importHbaseDumpLocation" required="true" type="string">deprecated - not used</PARAM>
<PARAM managedBy="system" name="importHbaseDumpLocationParam" required="true" type="string">import_infospace_graph_location</PARAM>
<PARAM managedBy="user" name="objectStoreBlacklistCSV" required="false" type="string"/>
<PARAM managedBy="system" name="importProjectConceptsContextCSVParam" required="true" type="string">import_project_concepts_context_ids_csv</PARAM>
@ -908,7 +952,7 @@
'import_islookup_service_location' : 'import_islookup_service_location',
'import_project_concepts_context_ids_csv' : 'import_project_concepts_context_ids_csv',
'import_dataset_mdstore_ids_csv' : 'import_dataset_mdstore_ids_csv',
'import_infospace_graph_location' : 'import_infospace_graph_location',
'import_infospace_graph_location' : 'groupedGraphPath',
'export_action_set_id_matched_doc_organizations' : 'export_action_set_id_matched_doc_organizations',
'export_action_set_id_document_referencedDatasets' : 'export_action_set_id_document_referencedDatasets',
@ -958,7 +1002,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'inputActionSetIds' : 'actionSetIdsIISGraph',
'inputGraphRootPath' : 'resolvedGraphPath',
'inputGraphRootPath' : 'groupedGraphPath',
'outputGraphRootPath' : 'inferredGraphPath',
'isLookupUrl' : 'isLookUpUrl'
}
@ -1125,7 +1169,8 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'sourcePath' : 'affiliationGraphPath',
'outputPath': 'affiliationSemRelGraphPath'
'outputPath': 'affiliationSemRelGraphPath',
'iterations':'iterations'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
@ -1283,7 +1328,7 @@
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/blacklist/oozie_app',
'workingDir' : '/tmp/beta_experiment/working_dir/blacklist',
'postgresURL' : '',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : '',
'postgresPassword' : ''
}
@ -1296,10 +1341,10 @@
</NODE>
</CONFIGURATION>
<STATUS>
<LAST_EXECUTION_ID>wf_20211206_093743_83</LAST_EXECUTION_ID>
<LAST_EXECUTION_DATE>2021-12-06T10:12:32+00:00</LAST_EXECUTION_DATE>
<LAST_EXECUTION_STATUS>SUCCESS</LAST_EXECUTION_STATUS>
<LAST_EXECUTION_ERROR/>
<LAST_EXECUTION_ID>wf_20220111_200505_785</LAST_EXECUTION_ID>
<LAST_EXECUTION_DATE>2022-01-11T20:08:53+00:00</LAST_EXECUTION_DATE>
<LAST_EXECUTION_STATUS></LAST_EXECUTION_STATUS>
<LAST_EXECUTION_ERROR></LAST_EXECUTION_ERROR>
</STATUS>
</BODY>
</RESOURCE_PROFILE>

87
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/provision/00_beta_graph_for_IIS.xml
View File

@ -11,6 +11,16 @@
<WORKFLOW_TYPE>IIS</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual">
<NODE isStart="true" name="setUnresolvedEntityPath" type="SetEnvParameter">
<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_BETA/content</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setNsPrefixBlacklistForBETA" type="SetEnvParameter">
<DESCRIPTION>set blacklist of funder nsPrefixes from the beta aggregator</DESCRIPTION>
<PARAMETERS>
@ -71,11 +81,31 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setResolvedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">resolvedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/04_graph_resolved</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setGroupedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the GROUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">groupedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/05_graph_grouped</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/04_graph_dedup</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/06_graph_dedup</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -85,7 +115,7 @@
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/05_graph_consistent</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/07_graph_consistent</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -95,7 +125,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/06_graph_cleaned</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/08_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -548,6 +578,55 @@
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphResolution"/>
</ARCS>
</NODE>
<NODE name="graphResolution" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'cleanedFirstGraphPath',
'unresolvedPath' :'unresolvedEntityPath',
'targetPath':'resolvedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/resolution/oozie_app',
'workingDir' : '/tmp/beta_inference/working_dir/relation_resolution',
'sparkExecutorCores' : '2',
'sparkExecutorMemory' : '12G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphEntityGrouping"/>
</ARCS>
</NODE>
<NODE name="graphEntityGrouping" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'resolvedGraphPath',
'targetPath':'groupedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/group/oozie_app',
'workingDir' : '/tmp/beta_inference/working_dir/grouping',
'sparkExecutorCores' : '4',
'sparkExecutorMemory' : '7G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="duplicateScan"/>
</ARCS>
@ -560,7 +639,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'actionSetId' : 'dedupConfig',
'graphBasePath' : 'cleanedFirstGraphPath',
'graphBasePath' : 'groupedGraphPath',
'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}

53
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/provision/00_prod_graph_for_IIS.xml
View File

@ -11,6 +11,16 @@
<WORKFLOW_TYPE>IIS</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual">
<NODE isStart="true" name="setUnresolvedEntityPath" type="SetEnvParameter">
<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_PROD/content</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setNsPrefixBlacklist" type="SetEnvParameter">
<DESCRIPTION>set blacklist of funder nsPrefixes</DESCRIPTION>
<PARAMETERS>
@ -61,11 +71,21 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setResolvedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">resolvedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/03_graph_resolved</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/03_graph_dedup</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/04_graph_dedup</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -75,7 +95,7 @@
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/04_graph_consistent</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/05_graph_consistent</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -85,7 +105,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/05_graph_cleaned</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_inference/graph/06_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -347,6 +367,31 @@
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphResolution"/>
</ARCS>
</NODE>
<NODE name="graphResolution" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'cleanedFirstGraphPath',
'unresolvedPath' :'unresolvedEntityPath',
'targetPath':'resolvedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/PROD/oa/graph/resolution/oozie_app',
'workingDir' : '/tmp/prod_inference/working_dir/relation_resolution',
'sparkExecutorCores' : '2',
'sparkExecutorMemory' : '12G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="duplicateScan"/>
</ARCS>
@ -359,7 +404,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'actionSetId' : 'dedupConfig',
'graphBasePath' : 'cleanedFirstGraphPath',
'graphBasePath' : 'resolvedGraphPath',
'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}

115
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/provision/02_beta_graph.xml
View File

@ -11,6 +11,16 @@
<WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual">
<NODE isStart="true" name="setUnresolvedEntityPath" type="SetEnvParameter">
<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_BETA/content</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setNsPrefixBlacklistForBETA" type="SetEnvParameter">
<DESCRIPTION>set blacklist of funder nsPrefixes from the beta aggregator</DESCRIPTION>
<PARAMETERS>
@ -71,11 +81,31 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setResolvedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">resolvedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/04_graph_resolved</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setGroupedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the GROUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">groupedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_grouped</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/04_graph_dedup</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_dedup</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -85,7 +115,7 @@
<DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_inferred</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_inferred</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -95,7 +125,7 @@
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_consistent</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_consistent</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -105,7 +135,7 @@
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_orcid</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -115,7 +145,7 @@
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_bulktagging</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_bulktagging</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -125,7 +155,17 @@
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_affiliation</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_affiliation</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setAffiliationSemRelGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the AFFILIATION from SEMATIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationSemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_affiliationsr</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -135,7 +175,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_comunity_organization</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/13_graph_comunity_organization</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -145,7 +185,7 @@
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_funding</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/14_graph_funding</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -155,7 +195,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_comunity_sem_rel</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/15_graph_comunity_sem_rel</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -165,7 +205,7 @@
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/13_graph_country</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/16_graph_country</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -175,7 +215,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/14_graph_cleaned</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/17_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -185,7 +225,7 @@
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/15_graph_blacklisted</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/18_graph_blacklisted</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -695,6 +735,55 @@
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphResolution"/>
</ARCS>
</NODE>
<NODE name="graphResolution" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'cleanedFirstGraphPath',
'unresolvedPath' :'unresolvedEntityPath',
'targetPath':'resolvedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/resolution/oozie_app',
'workingDir' : '/tmp/beta_provision/working_dir/relation_resolution',
'sparkExecutorCores' : '2',
'sparkExecutorMemory' : '12G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphEntityGrouping"/>
</ARCS>
</NODE>
<NODE name="graphEntityGrouping" type="SubmitHadoopJob">
<DESCRIPTION>Resolve Relation</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'resolvedGraphPath',
'targetPath':'groupedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/group/oozie_app',
'workingDir' : '/tmp/beta_provision/working_dir/grouping',
'sparkExecutorCores' : '4',
'sparkExecutorMemory' : '7G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="duplicateScan"/>
</ARCS>
@ -707,7 +796,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'actionSetId' : 'dedupConfig',
'graphBasePath' : 'cleanedFirstGraphPath',
'graphBasePath' : 'groupedGraphPath',
'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}

99
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/provision/02_prod_graph.xml
View File

@ -11,6 +11,16 @@
<WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual">
<NODE isStart="true" name="setUnresolvedEntityPath" type="SetEnvParameter">
<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_PROD/content</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setNsPrefixBlacklist" type="SetEnvParameter">
<DESCRIPTION>set blacklist of funder nsPrefixes</DESCRIPTION>
<PARAMETERS>
@ -51,11 +61,21 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setResolvedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">resolvedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_inference/graph/03_graph_resolved</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/03_graph_dedup</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/04_graph_dedup</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -65,7 +85,7 @@
<DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/04_graph_inferred</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/05_graph_inferred</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -75,7 +95,7 @@
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/05_graph_consistent</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/06_graph_consistent</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -85,7 +105,7 @@
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/06_graph_orcid</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/07_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -95,7 +115,7 @@
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/07_graph_bulktagging</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/08_graph_bulktagging</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -105,7 +125,7 @@
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/08_graph_affiliation</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/09_graph_affiliation</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -115,7 +135,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/09_graph_comunity_organization</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/10_graph_comunity_organization</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -125,7 +145,7 @@
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/10_graph_funding</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/11_graph_funding</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -135,7 +155,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/11_graph_comunity_sem_rel</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/12_graph_comunity_sem_rel</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -145,7 +165,7 @@
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/12_graph_country</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/13_graph_country</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -155,7 +175,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/13_graph_cleaned</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/14_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -165,7 +185,7 @@
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/14_graph_blacklisted</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/15_graph_blacklisted</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
@ -446,6 +466,59 @@
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="patchHostedBy"/>
</ARCS>
</NODE>
<NODE name="patchHostedBy" type="SubmitHadoopJob">
<DESCRIPTION>updates publication's hostedby info according to the ISSNs available from DOAJ and UNIBI</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'sourcePath' : 'cleanedFirstGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'resumeFrom' : 'prepareInfo',
'hostedByMapPath' : '/user/dnet.production/data/hostedByMap',
'oozie.wf.application.path' : '/lib/dnet/PROD/oa/graph/hostedbymap/oozie_app',
'workingDir' : '/tmp/prod_provision/working_dir/hostedbymap',
'outputPath' : '/tmp/prod_provision/working_dir/hostedbymap',
'sparkExecutorCores' : '3',
'sparkExecutorMemory' : '10G'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphResolution"/>
</ARCS>
</NODE>
<NODE name="graphResolution" type="SubmitHadoopJob">
<DESCRIPTION>Graph resolution</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphBasePath':'cleanedFirstGraphPath',
'unresolvedPath' :'unresolvedEntityPath',
'targetPath':'resolvedGraphPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/PROD/oa/graph/resolution/oozie_app',
'workingDir' : '/tmp/prod_provision/working_dir/relation_resolution',
'shouldResolveEntities' : 'false',
'sparkExecutorCores' : '4',
'sparkExecutorMemory' : '9G'
}
</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="duplicateScan"/>
</ARCS>
@ -458,7 +531,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'actionSetId' : 'dedupConfig',
'graphBasePath' : 'cleanedFirstGraphPath',
'graphBasePath' : 'resolvedGraphPath',
'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}