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removed invalid deletion

This commit is contained in:
Michele Artini 2024-02-14 11:59:30 +01:00
parent ddd6a7ceb3
commit 2e11197142
1 changed files with 18 additions and 25 deletions
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15
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/base/BaseAnalyzerJob.java
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@ -36,7 +36,6 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.ror.GenerateRorActionSetJob; import eu.dnetlib.dhp.actionmanager.ror.GenerateRorActionSetJob;
import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.common.aggregation.AggregatorReport; import eu.dnetlib.dhp.common.aggregation.AggregatorReport;
public class BaseAnalyzerJob { public class BaseAnalyzerJob {
@ -48,8 +47,7 @@ public class BaseAnalyzerJob {
public static void main(final String[] args) throws Exception { public static void main(final String[] args) throws Exception {
final String jsonConfiguration = IOUtils final String jsonConfiguration = IOUtils
.toString( .toString(GenerateRorActionSetJob.class
GenerateRorActionSetJob.class
.getResourceAsStream("/eu/dnetlib/dhp/collection/plugin/base/action_set_parameters.json")); .getResourceAsStream("/eu/dnetlib/dhp/collection/plugin/base/action_set_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
@ -78,8 +76,6 @@ public class BaseAnalyzerJob {
final String inputPath, final String inputPath,
final String outputPath) throws IOException { final String outputPath) throws IOException {
HdfsSupport.remove(outputPath, spark.sparkContext().hadoopConfiguration());
try (final FileSystem fs = FileSystem.get(new Configuration()); try (final FileSystem fs = FileSystem.get(new Configuration());
final AggregatorReport report = new AggregatorReport()) { final AggregatorReport report = new AggregatorReport()) {
final Map<String, AtomicLong> fields = new HashMap<>(); final Map<String, AtomicLong> fields = new HashMap<>();
@ -163,12 +159,9 @@ public class BaseAnalyzerJob {
private static void saveReport(final FileSystem fs, final String outputPath, final Map<String, AtomicLong> fields) private static void saveReport(final FileSystem fs, final String outputPath, final Map<String, AtomicLong> fields)
throws JsonProcessingException, IOException { throws JsonProcessingException, IOException {
try (final SequenceFile.Writer writer = SequenceFile try (final SequenceFile.Writer writer = SequenceFile
.createWriter( .createWriter(fs.getConf(), SequenceFile.Writer.file(new Path(outputPath)), SequenceFile.Writer
fs.getConf(), SequenceFile.Writer.file(new Path(outputPath)), SequenceFile.Writer .keyClass(IntWritable.class), SequenceFile.Writer
.keyClass(IntWritable.class), .valueClass(Text.class), SequenceFile.Writer.compression(SequenceFile.CompressionType.BLOCK, new DeflateCodec()))) {
SequenceFile.Writer
.valueClass(Text.class),
SequenceFile.Writer.compression(SequenceFile.CompressionType.BLOCK, new DeflateCodec()))) {
final Text key = new Text(); final Text key = new Text();
final Text value = new Text(); final Text value = new Text();