From 2d67020c590cd4d779e978ca8688c632c0019a57 Mon Sep 17 00:00:00 2001 From: Sandro La Bruzzo Date: Tue, 16 Nov 2021 16:01:08 +0100 Subject: [PATCH] added dhp-enrichment maven site template --- .../src/site/markdown/pubmed.md | 6 ++++- .../dhp-aggregation/src/site/site.xml | 1 - .../dhp-enrichment/src/site/markdown/about.md | 1 + .../dhp-enrichment/src/site/site.xml | 26 +++++++++++++++++++ 4 files changed, 32 insertions(+), 2 deletions(-) create mode 100644 dhp-workflows/dhp-enrichment/src/site/markdown/about.md create mode 100644 dhp-workflows/dhp-enrichment/src/site/site.xml diff --git a/dhp-workflows/dhp-aggregation/src/site/markdown/pubmed.md b/dhp-workflows/dhp-aggregation/src/site/markdown/pubmed.md index f6327a51b..00e3ed877 100644 --- a/dhp-workflows/dhp-aggregation/src/site/markdown/pubmed.md +++ b/dhp-workflows/dhp-aggregation/src/site/markdown/pubmed.md @@ -4,7 +4,7 @@ This section describes the mapping implemented for [MEDLINE/PubMed](https://pubm Collection --------- The native data is collected from [ftp baseline](https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/) containing XML with -the following [shcema](https://www.nlm.nih.gov/bsd/licensee/elements_descriptions.html) +the following [schema](https://www.nlm.nih.gov/bsd/licensee/elements_descriptions.html) Parsing @@ -50,6 +50,10 @@ The table below describes the mapping from the XML Native to the OAF mapping |//Author/FullName| author.Forename| Concatenation of forname + lastName if exist | |FOR ALL AUTHOR | author.rank| sequential number starting from 1| +#TODO + +Missing item mapped + diff --git a/dhp-workflows/dhp-aggregation/src/site/site.xml b/dhp-workflows/dhp-aggregation/src/site/site.xml index da5da0f1e..c0a70264d 100644 --- a/dhp-workflows/dhp-aggregation/src/site/site.xml +++ b/dhp-workflows/dhp-aggregation/src/site/site.xml @@ -20,7 +20,6 @@ - diff --git a/dhp-workflows/dhp-enrichment/src/site/markdown/about.md b/dhp-workflows/dhp-enrichment/src/site/markdown/about.md new file mode 100644 index 000000000..c220c63b2 --- /dev/null +++ b/dhp-workflows/dhp-enrichment/src/site/markdown/about.md @@ -0,0 +1 @@ +#DHP Enrichment \ No newline at end of file diff --git a/dhp-workflows/dhp-enrichment/src/site/site.xml b/dhp-workflows/dhp-enrichment/src/site/site.xml new file mode 100644 index 000000000..dad0cd996 --- /dev/null +++ b/dhp-workflows/dhp-enrichment/src/site/site.xml @@ -0,0 +1,26 @@ + + + + org.apache.maven.skins + maven-fluido-skin + 1.8 + + + + + + + + + + + + + + + + + \ No newline at end of file