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events recognition

This commit is contained in:
Michele Artini 2020-05-15 12:25:37 +02:00
parent a832658296
commit 2a4e68a292
18 changed files with 281 additions and 140 deletions
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22
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java
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@ -17,18 +17,18 @@ import org.slf4j.LoggerFactory;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.model.Event;
import eu.dnetlib.dhp.broker.model.EventFactory;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingAbstract;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingAuthorOrcid;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingOpenAccess;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingPid;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingProject;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingPublicationDate;
import eu.dnetlib.dhp.broker.oa.util.EnrichMissingSubject;
import eu.dnetlib.dhp.broker.oa.util.EnrichMoreOpenAccess;
import eu.dnetlib.dhp.broker.oa.util.EnrichMorePid;
import eu.dnetlib.dhp.broker.oa.util.EnrichMoreSubject;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAbstract;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAuthorOrcid;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingOpenAccess;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPid;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingProject;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationDate;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSubject;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreOpenAccess;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMorePid;
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSubject;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.broker.oa.util.UpdateMatcher;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.oaf.Result;

3
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingAbstract.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAbstract.java
View File

@ -1,11 +1,12 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingAbstract extends UpdateMatcher<String> {

3
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingAuthorOrcid.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAuthorOrcid.java
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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
@ -7,6 +7,7 @@ import java.util.List;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingAuthorOrcid extends UpdateMatcher<Pair<String, String>> {

55
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingOpenAccess.java Normal file
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@ -0,0 +1,55 @@
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingOpenAccess extends UpdateMatcher<Instance> {
public EnrichMissingOpenAccess() {
super(true);
}
@Override
protected List<UpdateInfo<Instance>> findUpdates(final Result source, final Result target) {
final long count = target
.getInstance()
.stream()
.map(i -> i.getAccessright().getClassid())
.filter(right -> right.equals(BrokerConstants.OPEN_ACCESS))
.count();
if (count > 0) {
return Arrays.asList();
}
return source
.getInstance()
.stream()
.filter(i -> i.getAccessright().getClassid().equals(BrokerConstants.OPEN_ACCESS))
.map(ConversionUtils::oafInstanceToBrokerInstances)
.flatMap(s -> s)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override
public UpdateInfo<Instance> generateUpdateInfo(final Instance highlightValue,
final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.ENRICH_MISSING_OA_VERSION,
highlightValue, source, target,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
}
}

19
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingPid.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPid.java
View File

@ -1,11 +1,14 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Pid;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingPid extends UpdateMatcher<Pid> {
@ -16,8 +19,18 @@ public class EnrichMissingPid extends UpdateMatcher<Pid> {
@Override
protected List<UpdateInfo<Pid>> findUpdates(final Result source, final Result target) {
// return Arrays.asList(new EnrichMissingAbstract("xxxxxxx", 0.9f));
return Arrays.asList();
final long count = target.getPid().size();
if (count > 0) {
return Arrays.asList();
}
return source
.getPid()
.stream()
.map(ConversionUtils::oafPidToBrokerPid)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override

6
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingProject.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingProject.java
View File

@ -1,11 +1,12 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.broker.objects.Project;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingProject extends UpdateMatcher<Project> {
@ -21,7 +22,8 @@ public class EnrichMissingProject extends UpdateMatcher<Project> {
}
@Override
public UpdateInfo<Project> generateUpdateInfo(final Project highlightValue, final Result source,
public UpdateInfo<Project> generateUpdateInfo(final Project highlightValue,
final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.ENRICH_MISSING_PROJECT,

3
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingPublicationDate.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationDate.java
View File

@ -1,10 +1,11 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingPublicationDate extends UpdateMatcher<String> {

53
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSubject.java Normal file
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@ -0,0 +1,53 @@
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class EnrichMissingSubject extends UpdateMatcher<Pair<String, String>> {
public EnrichMissingSubject() {
super(true);
}
@Override
protected List<UpdateInfo<Pair<String, String>>> findUpdates(final Result source, final Result target) {
final Set<String> existingTypes = target
.getSubject()
.stream()
.map(StructuredProperty::getQualifier)
.map(Qualifier::getClassid)
.collect(Collectors.toSet());
return source
.getPid()
.stream()
.filter(pid -> !existingTypes.contains(pid.getQualifier().getClassid()))
.map(ConversionUtils::oafSubjectToPair)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override
public UpdateInfo<Pair<String, String>> generateUpdateInfo(final Pair<String, String> highlightValue,
final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.fromPath("ENRICH/MISSING/SUBJECT/" + highlightValue.getLeft()),
highlightValue, source, target,
(p, pair) -> p.getSubjects().add(pair.getRight()),
pair -> pair.getLeft() + "::" + pair.getRight());
}
}

53
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreOpenAccess.java Normal file
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@ -0,0 +1,53 @@
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMoreOpenAccess extends UpdateMatcher<Instance> {
public EnrichMoreOpenAccess() {
super(true);
}
@Override
protected List<UpdateInfo<Instance>> findUpdates(final Result source, final Result target) {
final Set<String> urls = target
.getInstance()
.stream()
.filter(i -> i.getAccessright().getClassid().equals(BrokerConstants.OPEN_ACCESS))
.map(i -> i.getUrl())
.flatMap(List::stream)
.collect(Collectors.toSet());
return source
.getInstance()
.stream()
.filter(i -> i.getAccessright().getClassid().equals(BrokerConstants.OPEN_ACCESS))
.map(ConversionUtils::oafInstanceToBrokerInstances)
.flatMap(s -> s)
.filter(i -> !urls.contains(i.getUrl()))
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override
public UpdateInfo<Instance> generateUpdateInfo(final Instance highlightValue,
final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.ENRICH_MORE_OA_VERSION,
highlightValue, source, target,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
}
}

22
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMorePid.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMorePid.java
View File

@ -1,11 +1,14 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import eu.dnetlib.broker.objects.Pid;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMorePid extends UpdateMatcher<Pid> {
@ -16,8 +19,19 @@ public class EnrichMorePid extends UpdateMatcher<Pid> {
@Override
protected List<UpdateInfo<Pid>> findUpdates(final Result source, final Result target) {
// return Arrays.asList(new EnrichMissingAbstract("xxxxxxx", 0.9f));
return Arrays.asList();
final Set<String> existingPids = target
.getPid()
.stream()
.map(pid -> pid.getQualifier().getClassid() + "::" + pid.getValue())
.collect(Collectors.toSet());
return source
.getPid()
.stream()
.filter(pid -> !existingPids.contains(pid.getQualifier().getClassid() + "::" + pid.getValue()))
.map(ConversionUtils::oafPidToBrokerPid)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override

28
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMoreSubject.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSubject.java
View File

@ -1,12 +1,15 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMoreSubject extends UpdateMatcher<Pair<String, String>> {
@ -17,18 +20,25 @@ public class EnrichMoreSubject extends UpdateMatcher<Pair<String, String>> {
@Override
protected List<UpdateInfo<Pair<String, String>>> findUpdates(final Result source, final Result target) {
// MESHEUROPMC
// ARXIV
// JEL
// DDC
// ACM
final Set<String> existingSubjects = target
.getSubject()
.stream()
.map(pid -> pid.getQualifier().getClassid() + "::" + pid.getValue())
.collect(Collectors.toSet());
return Arrays.asList();
return source
.getPid()
.stream()
.filter(pid -> !existingSubjects.contains(pid.getQualifier().getClassid() + "::" + pid.getValue()))
.map(ConversionUtils::oafSubjectToPair)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}
@Override
public UpdateInfo<Pair<String, String>> generateUpdateInfo(final Pair<String, String> highlightValue,
final Result source, final Result target) {
final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.fromPath("ENRICH/MORE/SUBJECT/" + highlightValue.getLeft()),

3
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/UpdateMatcher.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/UpdateMatcher.java
View File

@ -1,5 +1,5 @@
package eu.dnetlib.dhp.broker.oa.util;
package eu.dnetlib.dhp.broker.oa.matchers;
import java.util.Arrays;
import java.util.Collection;
@ -10,6 +10,7 @@ import java.util.Map;
import org.apache.commons.codec.digest.DigestUtils;
import org.apache.commons.lang3.StringUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Field;
import eu.dnetlib.dhp.schema.oaf.Result;

7
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/BrokerConstants.java Normal file
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@ -0,0 +1,7 @@
package eu.dnetlib.dhp.broker.oa.util;
public class BrokerConstants {
public final static String OPEN_ACCESS = "OPEN";
}

36
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java Normal file
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@ -0,0 +1,36 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.stream.Stream;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.broker.objects.Pid;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class ConversionUtils {
public static Stream<Instance> oafInstanceToBrokerInstances(final eu.dnetlib.dhp.schema.oaf.Instance i) {
return i.getUrl().stream().map(url -> {
final Instance r = new Instance();
r.setUrl(url);
r.setInstancetype(i.getInstancetype().getClassid());
r.setLicense(BrokerConstants.OPEN_ACCESS);
r.setHostedby(i.getHostedby().getValue());
return r;
});
}
public static Pid oafPidToBrokerPid(final StructuredProperty sp) {
final Pid pid = new Pid();
pid.setValue(sp.getValue());
pid.setType(sp.getQualifier().getClassid());
return pid;
}
public static final Pair<String, String> oafSubjectToPair(final StructuredProperty sp) {
return Pair.of(sp.getQualifier().getClassid(), sp.getValue());
}
}

33
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingOpenAccess.java
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@ -1,33 +0,0 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingOpenAccess extends UpdateMatcher<Instance> {
public EnrichMissingOpenAccess() {
super(true);
}
@Override
protected List<UpdateInfo<Instance>> findUpdates(final Result source, final Result target) {
return Arrays.asList();
}
@Override
public UpdateInfo<Instance> generateUpdateInfo(final Instance highlightValue, final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.ENRICH_MISSING_OA_VERSION,
highlightValue, source, target,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
}
}

40
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMissingSubject.java
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@ -1,40 +0,0 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.Arrays;
import java.util.List;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMissingSubject extends UpdateMatcher<Pair<String, String>> {
public EnrichMissingSubject() {
super(true);
}
@Override
protected List<UpdateInfo<Pair<String, String>>> findUpdates(final Result source, final Result target) {
// MESHEUROPMC
// ARXIV
// JEL
// DDC
// ACM
return Arrays.asList();
}
@Override
public UpdateInfo<Pair<String, String>> generateUpdateInfo(final Pair<String, String> highlightValue,
final Result source, final Result target) {
return new UpdateInfo<>(
Topic.fromPath("ENRICH/MISSING/SUBJECT/" + highlightValue.getLeft()),
highlightValue, source, target,
(p, pair) -> p.getSubjects().add(pair.getRight()),
pair -> pair.getLeft() + "::" + pair.getRight());
}
}

33
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EnrichMoreOpenAccess.java
View File

@ -1,33 +0,0 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.Arrays;
import java.util.List;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.schema.oaf.Result;
public class EnrichMoreOpenAccess extends UpdateMatcher<Instance> {
public EnrichMoreOpenAccess() {
super(true);
}
@Override
protected List<UpdateInfo<Instance>> findUpdates(final Result source, final Result target) {
// return Arrays.asList(new EnrichMissingAbstract("xxxxxxx", 0.9f));
return Arrays.asList();
}
@Override
public UpdateInfo<Instance> generateUpdateInfo(final Instance highlightValue, final Result source,
final Result target) {
return new UpdateInfo<>(
Topic.ENRICH_MORE_OA_VERSION,
highlightValue, source, target,
(p, i) -> p.getInstances().add(i),
Instance::getUrl);
}
}

2
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/UpdateInfo.java
View File

@ -25,7 +25,7 @@ public final class UpdateInfo<T> {
private final float trust;
protected UpdateInfo(final Topic topic, final T highlightValue, final Result source, final Result target,
public UpdateInfo(final Topic topic, final T highlightValue, final Result source, final Result target,
final BiConsumer<Publication, T> compileHighlight,
final Function<T, String> highlightToString) {
this.topic = topic;