Merge pull request '[stats wf] latest version of indicators + added FOS classification' (#232) from antonis.lempesis/dnet-hadoop:beta into beta

Reviewed-on: #232

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql

@@ -1,4 +1,4 @@
----- Sprint 1 ----
+-- Sprint 1 ----
 create table indi_pub_green_oa stored as parquet as
 select distinct p.id, coalesce(green_oa, 0) as green_oa
 from publication p
@@ -22,7 +22,8 @@ select p.id, 1 as grey_lit
     from publication p
              join result_classifications rt on rt.id = p.id
     where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
-not exists (select 1 from result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id;
+        not exists (select 1 from result_classifications rc where type ='Other literature type'
+                                                              and rc.id=p.id)) tmp on p.id=tmp.id;
 
 compute stats indi_pub_grey_lit;
 
@@ -36,7 +37,8 @@ where pidtype='Digital Object Identifier' and d.name ='Crossref') tmp
      on tmp.id=p.id;
 
 compute stats indi_pub_doi_from_crossref;
----- Sprint 2 ----
+
+-- Sprint 2 ----
 create table indi_result_has_cc_licence stored as parquet as
 select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
 from result r
@@ -82,31 +84,61 @@ on r.id= tmp.id;
 
 compute stats indi_funded_result_with_fundref;
 
--- create table indi_result_org_country_collab stored as parquet as
+create table indi_result_org_collab stored as parquet as
--- with tmp as
+select o1.organization org1, o2.organization org2, count(distinct o1.id) as collaborations
--- (select o.id as id, o.country , ro.id as result,r.type  from organization o
+from result_organization as o1
--- join result_organization ro on o.id=ro.organization
+         join result_organization as o2 on o1.id=o2.id and o1.organization!=o2.organization
--- join result r on r.id=ro.id where o.country <> 'UNKNOWN')
+group by o1.organization, o2.organization;
--- select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations
--- from tmp as o1
--- join tmp as o2 on o1.result=o2.result
--- where o1.id<>o2.id and o1.country<>o2.country
--- group by o1.id, o1.type,o2.country;
---
--- compute stats indi_result_org_country_collab;
 
--- create table indi_result_org_collab stored as parquet as
+compute stats indi_result_org_collab;
--- with tmp as
+
--- (select o.id, ro.id as result,r.type  from organization o
+create table indi_result_org_country_collab stored as parquet as
--- join result_organization ro on o.id=ro.organization
+    with tmp as
--- join result r on r.id=ro.id)
+        (select o.id as id, o.country , ro.id as result,r.type  from organization o
--- select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaborations
+        join result_organization ro on o.id=ro.organization
--- from tmp as o1
+        join result r on r.id=ro.id where o.country <> 'UNKNOWN')
--- join tmp as o2 on o1.result=o2.result
+select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations
--- where o1.id<>o2.id
+from tmp as o1
--- group by o1.id, o2.id, o1.type;
+         join tmp as o2 on o1.result=o2.result
---
+where o1.id<>o2.id and o1.country<>o2.country
--- compute stats indi_result_org_collab;
+group by o1.id, o1.type,o2.country;
+
+compute stats indi_result_org_country_collab;
+
+create table indi_result_org_collab stored as parquet as
+    with tmp as
+        (select o.id, ro.id as result,r.type  from organization o
+        join result_organization ro on o.id=ro.organization
+        join result r on r.id=ro.id)
+select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaborations
+from tmp as o1
+         join tmp as o2 on o1.result=o2.result
+where o1.id<>o2.id
+group by o1.id, o2.id, o1.type;
+
+compute stats indi_result_org_collab;
+
+create table indi_project_collab_org stored as parquet as
+select o1.id org1,o2.id org2, count(distinct o1.project) as collaborations
+from organization_projects as o1
+         join organization_projects as o2 on o1.project=o2.project
+where o1.id!=o2.id
+group by o1.id, o2.id;
+
+compute stats indi_project_collab_org;
+
+create table indi_project_collab_org_country stored as parquet as
+    with tmp as
+        (select o.id organization, o.country , ro.project as project  from organization o
+        join organization_projects ro on o.id=ro.id
+        and o.country <> 'UNKNOWN')
+select o1.organization org1,o2.country country2, count(distinct o1.project) as collaborations
+from tmp as o1
+         join tmp as o2 on o1.project=o2.project
+where o1.organization<>o2.organization and o1.country<>o2.country
+group by o1.organization, o2.country;
+
+compute stats indi_project_collab_org_country;
 
 create table indi_funder_country_collab stored as parquet as
     with tmp as (select funder, project, country from organization_projects op
@@ -125,7 +157,7 @@ create table indi_result_country_collab stored as parquet as
     with tmp as
         (select country, ro.id as result,r.type  from organization o
         join result_organization ro on o.id=ro.organization
-join result r on r.id=ro.id)
+        join result r on r.id=ro.id where country <> 'UNKNOWN')
 select o1.country country1, o2.country country2, o1.type, count(distinct o1.result) as collaborations
 from tmp as o1
          join tmp as o2 on o1.result=o2.result
@@ -182,176 +214,178 @@ where d.type like '%Journal%' and ri.accessright='Closed Access' and
                                                                                         on tmp.id=ri.id;
 
 compute stats indi_pub_closed_other_open;
+
 ---- Sprint 5 ----
 create table indi_result_no_of_copies stored as parquet as
 select id, count(id) as number_of_copies from result_instance group by id;
 
 compute stats indi_result_no_of_copies;
+
 ---- Sprint 6 ----
-create table indi_pub_gold_oa stored as parquet as
+--create table indi_pub_gold_oa stored as parquet as
-WITH gold_oa AS (
+--WITH gold_oa AS (
-    SELECT issn_l, journal_is_in_doaj,journal_is_oa, issn_1 as issn
+--    SELECT issn_l, journal_is_in_doaj,journal_is_oa, issn_1 as issn
-    FROM stats_ext.oa_journals
+--    FROM stats_ext.oa_journals
-    WHERE issn_1 != ""
+--    WHERE issn_1 != ""
-    UNION ALL
+--    UNION ALL
-    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_2 as issn
+--    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_2 as issn
-    FROM stats_ext.oa_journals
+--    FROM stats_ext.oa_journals
-    WHERE issn_2 != "" ),
+--    WHERE issn_2 != "" ),
-issn AS (
+--issn AS (
-    SELECT * FROM
+--    SELECT * FROM
-        (SELECT id, issn_printed as issn
+--        (SELECT id, issn_printed as issn
-        FROM datasource WHERE issn_printed IS NOT NULL
+--        FROM datasource WHERE issn_printed IS NOT NULL
-        UNION
+--        UNION
-        SELECT id, issn_online as issn
+--        SELECT id, issn_online as issn
-        FROM datasource WHERE issn_online IS NOT NULL) as issn
+--        FROM datasource WHERE issn_online IS NOT NULL) as issn
-        WHERE LENGTH(issn) > 7)
+--        WHERE LENGTH(issn) > 7)
-SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
+--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
-FROM publication_datasources pd
+--FROM publication_datasources pd
-LEFT OUTER JOIN (
+--LEFT OUTER JOIN (
-    SELECT pd.id, 1 as is_gold FROM publication_datasources pd
+--    SELECT pd.id, 1 as is_gold FROM publication_datasources pd
-    JOIN issn on issn.id=pd.datasource
+--    JOIN issn on issn.id=pd.datasource
-    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
+--    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
 
-compute stats indi_pub_gold_oa;
+--compute stats indi_pub_gold_oa;
+--
+--create table indi_datasets_gold_oa stored as parquet as
+--WITH gold_oa AS (
+--    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
+--    FROM stats_ext.oa_journals
+--    WHERE issn_1 != ""
+--    UNION
+--    ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
+--    FROM stats_ext.oa_journals
+--    WHERE issn_2 != "" ),
+--issn AS (
+--    SELECT *
+--    FROM (
+--        SELECT id,issn_printed as issn
+--        FROM datasource
+--        WHERE issn_printed IS NOT NULL
+--        UNION
+--        SELECT id, issn_online as issn
+--        FROM datasource
+--        WHERE issn_online IS NOT NULL ) as issn
+--    WHERE LENGTH(issn) > 7)
+--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
+--FROM dataset_datasources pd
+--LEFT OUTER JOIN (
+--    SELECT pd.id, 1 as is_gold FROM dataset_datasources pd
+--    JOIN issn on issn.id=pd.datasource
+--    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
+--
+--compute stats indi_datasets_gold_oa;
 
-create table indi_datasets_gold_oa stored as parquet as
+--create table indi_software_gold_oa stored as parquet as
-WITH gold_oa AS (
+--WITH gold_oa AS (
-    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
+--    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
-    FROM stats_ext.oa_journals
+--    FROM stats_ext.oa_journals
-    WHERE issn_1 != ""
+--    WHERE issn_1 != ""
-    UNION
+--    UNION
-    ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
+--    ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
-    FROM stats_ext.oa_journals
+--    FROM stats_ext.oa_journals
-    WHERE issn_2 != "" ),
+--    WHERE issn_2 != "" ),
-issn AS (
+--issn AS (
-    SELECT *
+--    SELECT *
-    FROM (
+--    FROM (
-        SELECT id,issn_printed as issn
+--        SELECT id,issn_printed as issn
-        FROM datasource
+--        FROM datasource
-        WHERE issn_printed IS NOT NULL
+--        WHERE issn_printed IS NOT NULL
-        UNION
+--        UNION
-        SELECT id, issn_online as issn
+--        SELECT id, issn_online as issn
-        FROM datasource
+--        FROM datasource
-        WHERE issn_online IS NOT NULL ) as issn
+--        WHERE issn_online IS NOT NULL ) as issn
-    WHERE LENGTH(issn) > 7)
+--    WHERE LENGTH(issn) > 7)
-SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
+--SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
-FROM dataset_datasources pd
+--FROM software_datasources pd
-LEFT OUTER JOIN (
+--LEFT OUTER JOIN (
-    SELECT pd.id, 1 as is_gold FROM dataset_datasources pd
+--    SELECT pd.id, 1 as is_gold FROM software_datasources pd
-    JOIN issn on issn.id=pd.datasource
+--    JOIN issn on issn.id=pd.datasource
-    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
+--    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
-
+--
-compute stats indi_datasets_gold_oa;
+--compute stats indi_software_gold_oa;
-
-create table indi_software_gold_oa stored as parquet as
-WITH gold_oa AS (
-    SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_1 as issn
-    FROM stats_ext.oa_journals
-    WHERE issn_1 != ""
-    UNION
-    ALL SELECT issn_l,journal_is_in_doaj,journal_is_oa,issn_2 as issn
-    FROM stats_ext.oa_journals
-    WHERE issn_2 != "" ),
-issn AS (
-    SELECT *
-    FROM (
-        SELECT id,issn_printed as issn
-        FROM datasource
-        WHERE issn_printed IS NOT NULL
-        UNION
-        SELECT id, issn_online as issn
-        FROM datasource
-        WHERE issn_online IS NOT NULL ) as issn
-    WHERE LENGTH(issn) > 7)
-SELECT DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
-FROM software_datasources pd
-LEFT OUTER JOIN (
-    SELECT pd.id, 1 as is_gold FROM software_datasources pd
-    JOIN issn on issn.id=pd.datasource
-    JOIN gold_oa  on issn.issn = gold_oa.issn) tmp ON pd.id=tmp.id;
-
-compute stats indi_software_gold_oa;
-
-create table indi_org_findable stored as parquet as
-with result_with_pid as (
-    select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
-    join result_pids rp on rp.id=ro.id
-    group by ro.organization),
-result_has_abstract as (
-    select ro.organization organization, count(distinct rp.id) no_result_with_abstract from result_organization ro
-    join result rp on rp.id=ro.id where rp.abstract=true
-    group by ro.organization),
-allresults as (
-    select organization, count(distinct id) no_allresults from result_organization
-    group by organization),
-result_with_pid_share as (
-    select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults pid_share
-    from allresults
-    join result_with_pid on result_with_pid.organization=allresults.organization),
-result_with_abstract_share as (
-    select allresults.organization, result_has_abstract.no_result_with_abstract/allresults.no_allresults abstract_share
-    from allresults
-    join result_has_abstract on result_has_abstract.organization=allresults.organization)
-select allresults.organization, coalesce((pid_share+abstract_share)/2,pid_share) org_findable
-from allresults
-join result_with_pid_share on result_with_pid_share.organization=allresults.organization
-left outer join (
-    select organization, abstract_share from result_with_abstract_share) tmp on tmp.organization=allresults.organization;
-
-compute stats indi_org_findable;
-
-create table indi_org_openess stored as parquet as
-WITH datasets_oa as (
-    SELECT ro.organization, count(dg.id) no_oadatasets FROM indi_datasets_gold_oa dg
-    join openaire_prod_stats.result_organization ro on dg.id=ro.id
-    join openaire_prod_stats.dataset ds on dg.id=ds.id
-    WHERE dg.is_gold=1
-    group by ro.organization),
-software_oa as (
-    SELECT ro.organization, count(dg.id) no_oasoftware FROM indi_software_gold_oa dg
-    join openaire_prod_stats.result_organization ro on dg.id=ro.id
-    join openaire_prod_stats.software ds on dg.id=ds.id
-    WHERE dg.is_gold=1
-    group by ro.organization),
-pubs_oa as (
-    SELECT ro.organization, count(dg.id) no_oapubs FROM indi_pub_gold_oa dg
-    join openaire_prod_stats.result_organization ro on dg.id=ro.id
-    join openaire_prod_stats.publication ds on dg.id=ds.id
-    where dg.is_gold=1
-    group by ro.organization),
-allpubs as (
-    SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
-    join openaire_prod_stats.publication ps on ps.id=ro.id
-    group by ro.organization),
-alldatasets as (
-    SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
-    join openaire_prod_stats.dataset ps on ps.id=ro.id
-    group by ro.organization),
-allsoftware as (
-    SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
-    join openaire_prod_stats.software ps on ps.id=ro.id
-    group by ro.organization),
-allpubsshare as (
-    select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
-    join pubs_oa on allpubs.organization=pubs_oa.organization),
-alldatasetssshare as (
-    select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets c
-    from alldatasets
-    join datasets_oa on alldatasets.organization=datasets_oa.organization),
-allsoftwaresshare as (
-    select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
-    from allsoftware
-    join software_oa on allsoftware.organization=software_oa.organization)
-select allpubsshare.organization, coalesce((c+p+s)/3, p) org_openess
-FROM allpubsshare
-left outer join (
-    select organization,c from
-    alldatasetssshare) tmp on tmp.organization=allpubsshare.organization
-left outer join (
-    select organization,s from allsoftwaresshare) tmp1 on tmp1.organization=allpubsshare.organization;
-
-compute stats indi_org_openess;
 
+--create table indi_org_findable stored as parquet as
+--with result_with_pid as (
+--    select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
+--    join result_pids rp on rp.id=ro.id
+--    group by ro.organization),
+--result_has_abstract as (
+--    select ro.organization organization, count(distinct rp.id) no_result_with_abstract from result_organization ro
+--    join result rp on rp.id=ro.id where rp.abstract=true
+--    group by ro.organization),
+--allresults as (
+--    select organization, count(distinct id) no_allresults from result_organization
+--    group by organization),
+--result_with_pid_share as (
+--    select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults pid_share
+--    from allresults
+--    join result_with_pid on result_with_pid.organization=allresults.organization),
+--result_with_abstract_share as (
+--    select allresults.organization, result_has_abstract.no_result_with_abstract/allresults.no_allresults abstract_share
+--    from allresults
+--    join result_has_abstract on result_has_abstract.organization=allresults.organization)
+--select allresults.organization, coalesce((pid_share+abstract_share)/2,pid_share) org_findable
+--from allresults
+--join result_with_pid_share on result_with_pid_share.organization=allresults.organization
+--left outer join (
+--    select organization, abstract_share from result_with_abstract_share) tmp on tmp.organization=allresults.organization;
+--
+--compute stats indi_org_findable;
+--
+--create table indi_org_openess stored as parquet as
+--WITH datasets_oa as (
+--    SELECT ro.organization, count(dg.id) no_oadatasets FROM indi_datasets_gold_oa dg
+--    join result_organization ro on dg.id=ro.id
+--    join dataset ds on dg.id=ds.id
+--    WHERE dg.is_gold=1
+--    group by ro.organization),
+--software_oa as (
+--    SELECT ro.organization, count(dg.id) no_oasoftware FROM indi_software_gold_oa dg
+--    join result_organization ro on dg.id=ro.id
+--    join software ds on dg.id=ds.id
+--    WHERE dg.is_gold=1
+--    group by ro.organization),
+--pubs_oa as (
+--    SELECT ro.organization, count(dg.id) no_oapubs FROM indi_pub_gold_oa dg
+--    join result_organization ro on dg.id=ro.id
+--    join publication ds on dg.id=ds.id
+--    where dg.is_gold=1
+--    group by ro.organization),
+--allpubs as (
+--    SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
+--    join publication ps on ps.id=ro.id
+--    group by ro.organization),
+--alldatasets as (
+--    SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
+--    join dataset ps on ps.id=ro.id
+--    group by ro.organization),
+--allsoftware as (
+--    SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
+--    join software ps on ps.id=ro.id
+--    group by ro.organization),
+--allpubsshare as (
+--    select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
+--    join pubs_oa on allpubs.organization=pubs_oa.organization),
+--alldatasetssshare as (
+--    select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets c
+--    from alldatasets
+--    join datasets_oa on alldatasets.organization=datasets_oa.organization),
+--allsoftwaresshare as (
+--    select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
+--    from allsoftware
+--    join software_oa on allsoftware.organization=software_oa.organization)
+--select allpubsshare.organization, coalesce((c+p+s)/3, p) org_openess
+--FROM allpubsshare
+--left outer join (
+--    select organization,c from
+--    alldatasetssshare) tmp on tmp.organization=allpubsshare.organization
+--left outer join (
+--    select organization,s from allsoftwaresshare) tmp1 on tmp1.organization=allpubsshare.organization;
+--
+--compute stats indi_org_openess;
+--
 create table indi_pub_hybrid_oa_with_cc stored as parquet as
     WITH hybrid_oa AS (
         SELECT issn_l, journal_is_in_doaj, journal_is_oa, issn_print as issn
@@ -418,3 +452,394 @@ GROUP BY result_id, repository_id, `year`
 order by `year` asc, result_id;
 
 compute stats indi_pub_downloads_datasource_year;
+
+---- Sprint 7 ----
+create table indi_pub_gold_oa stored as parquet as
+    WITH gold_oa AS ( SELECT
+        issn_l,
+        journal_is_in_doaj,
+        journal_is_oa,
+        issn_1 as issn
+        FROM
+        stats_ext.oa_journals
+        WHERE
+        issn_1 != ""
+        UNION
+        ALL SELECT
+        issn_l,
+        journal_is_in_doaj,
+        journal_is_oa,
+        issn_2 as issn
+        FROM
+        stats_ext.oa_journals
+        WHERE
+        issn_2 != "" ),  issn AS ( SELECT
+                                   *
+                                   FROM
+( SELECT
+                                   id,
+                                   issn_printed as issn
+                                   FROM
+                                   datasource
+                                   WHERE
+                                   issn_printed IS NOT NULL
+                                   UNION
+                                   SELECT
+                                   id,
+                                   issn_online as issn
+                                   FROM
+                                   datasource
+                                   WHERE
+                                   issn_online IS NOT NULL or id like '%doajarticles%') as issn
+    WHERE
+    LENGTH(issn) > 7)
+SELECT
+    DISTINCT pd.id, coalesce(is_gold, 0) as is_gold
+FROM
+    publication_datasources pd
+        left outer join(
+        select pd.id, 1 as is_gold FROM publication_datasources pd
+                                            JOIN issn on issn.id=pd.datasource
+                                            JOIN gold_oa  on issn.issn = gold_oa.issn) tmp
+                       on pd.id=tmp.id;
+
+compute stats indi_pub_gold_oa;
+
+create table indi_pub_hybrid stored as parquet as
+    WITH gold_oa AS ( SELECT
+        issn_l,
+        journal_is_in_doaj,
+        journal_is_oa,
+        issn_1 as issn,
+        has_apc
+        FROM
+        stats_ext.oa_journals
+        WHERE
+        issn_1 != ""
+        UNION
+        ALL SELECT
+        issn_l,
+        journal_is_in_doaj,
+        journal_is_oa,
+        issn_2 as issn,
+        has_apc
+        FROM
+        stats_ext.oa_journals
+        WHERE
+        issn_2 != "" ),  issn AS ( SELECT
+                                   *
+                                   FROM
+( SELECT
+                                   id,
+                                   issn_printed as issn
+                                   FROM
+                                   datasource
+                                   WHERE
+                                   issn_printed IS NOT NULL
+                                   UNION
+                                   SELECT
+                                   id,
+                                   issn_online as issn
+                                   FROM
+                                   datasource
+                                   WHERE
+                                   issn_online IS NOT NULL or id like '%doajarticles%') as issn
+    WHERE
+    LENGTH(issn) > 7)
+select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
+from publication_datasources pd
+         left outer join (
+    select pd.id, 1 as is_hybrid from publication_datasources pd
+                                          join datasource d on d.id=pd.datasource
+                                          join issn on issn.id=pd.datasource
+                                          join gold_oa on issn.issn=gold_oa.issn
+    where (gold_oa.journal_is_in_doaj=false or gold_oa.journal_is_oa=false))tmp
+                         on pd.id=tmp.id;
+
+compute stats indi_pub_hybrid;
+
+create table indi_org_fairness stored as parquet as
+--return results with PIDs, and rich metadata group by organization
+    with result_fair as
+        (select ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
+    join result r on r.id=ro.id
+--join result_pids rp on r.id=rp.id
+    where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and year>2003
+    group by ro.organization),
+--return all results group by organization
+    allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
+    join result r on r.id=ro.id
+    where year>2003
+    group by organization)
+--return results_fair/all_results
+select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
+from allresults
+         join result_fair on result_fair.organization=allresults.organization;
+
+compute stats indi_org_fairness;
+
+create table indi_org_fairness_pub_pr stored as parquet as
+    with result_fair as
+        (select ro.organization organization, count(distinct ro.id) no_result_fair
+    from result_organization ro
+    join publication p on p.id=ro.id
+    join indi_pub_doi_from_crossref dc on dc.id=p.id
+    join indi_pub_grey_lit gl on gl.id=p.id
+    where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null)
+    and (authors>0) and cast(year as int)>2003 and dc.doi_from_crossref=1 and gl.grey_lit=0
+    group by ro.organization),
+    allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
+    join publication p on p.id=ro.id
+    where cast(year as int)>2003
+    group by organization)
+--return results_fair/all_results
+select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
+from allresults
+         join result_fair on result_fair.organization=allresults.organization;
+
+compute stats indi_org_fairness_pub_pr;
+
+create table indi_org_fairness_pub_year stored as parquet as
+    with result_fair as
+        (select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
+    join publication p on p.id=ro.id
+    where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and cast(year as int)>2003
+    group by ro.organization, year),
+    allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
+    join publication p on p.id=ro.id
+    where cast(year as int)>2003
+    group by organization, year)
+select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
+from allresults
+         join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
+
+compute stats indi_org_fairness_pub_year;
+
+create table indi_org_fairness_pub as
+with result_fair as
+         (select ro.organization organization, count(distinct ro.id) no_result_fair
+          from result_organization ro
+                   join publication p on p.id=ro.id
+          where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null)
+            and (authors>0) and cast(year as int)>2003
+          group by ro.organization),
+     allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
+                                                                                      join publication p on p.id=ro.id
+                    where cast(year as int)>2003
+                    group by organization)
+select allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
+from allresults
+         join result_fair on result_fair.organization=allresults.organization;
+
+compute stats indi_org_fairness_pub;
+
+create table indi_org_fairness_year stored as parquet as
+    with result_fair as
+        (select year, ro.organization organization, count(distinct ro.id) no_result_fair from result_organization ro
+    join result r on r.id=ro.id
+    join result_pids rp on r.id=rp.id
+    where (title is not null) and (publisher is not null) and (abstract is true) and (year is not null) and (authors>0) and year>2003
+    group by ro.organization, year),
+    allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
+    join result r on r.id=ro.id
+    where year>2003
+    group by organization, year)
+--return results_fair/all_results
+select allresults.year, allresults.organization, result_fair.no_result_fair/allresults.no_allresults org_fairness
+from allresults
+         join result_fair on result_fair.organization=allresults.organization and result_fair.year=allresults.year;
+
+compute stats indi_org_fairness_year;
+
+create table indi_org_findable_year stored as parquet as
+--return results with PIDs group by organization,year
+    with result_with_pid as
+        (select year, ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
+    join result_pids rp on rp.id=ro.id
+    join result r on r.id=rp.id
+    where year >2003
+    group by ro.organization, year),
+--return all results group by organization,year
+    allresults as (select year, organization, count(distinct ro.id) no_allresults from result_organization ro
+    join result r on r.id=ro.id
+    where year >2003
+    group by organization, year)
+--return results_with_pid/all_results
+select allresults.year, allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
+from allresults
+         join result_with_pid on result_with_pid.organization=allresults.organization and result_with_pid.year=allresults.year;
+
+compute stats indi_org_findable_year;
+
+create table indi_org_findable stored as parquet as
+--return results with PIDs group by organization
+    with result_with_pid as
+        (select ro.organization organization, count(distinct rp.id) no_result_with_pid from result_organization ro
+    join result_pids rp on rp.id=ro.id
+    join result r on r.id=rp.id
+    where year >2003
+    group by ro.organization),
+--return all results group by organization
+    allresults as (select organization, count(distinct ro.id) no_allresults from result_organization ro
+    join result r on r.id=ro.id
+    where year >2003
+    group by organization)
+--return results_with_pid/all_results
+select allresults.organization, result_with_pid.no_result_with_pid/allresults.no_allresults org_findable
+from allresults
+         join result_with_pid on result_with_pid.organization=allresults.organization;
+
+compute stats indi_org_findable;
+
+create table indi_org_openess stored as parquet as
+    WITH pubs_oa as (
+        SELECT ro.organization, count(distinct r.id) no_oapubs FROM publication r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization),
+    datasets_oa as (
+                       SELECT ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization),
+    software_oa as (
+                       SELECT ro.organization, count(distinct r.id) no_oasoftware FROM software r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization),
+    allpubs as (
+                   SELECT ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
+    join publication ps on ps.id=ro.id
+    where cast(ps.year as int)>2003
+    group by ro.organization),
+    alldatasets as (
+                       SELECT ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
+    join dataset ps on ps.id=ro.id
+    where cast(ps.year as int)>2003
+    group by ro.organization),
+    allsoftware as (
+                       SELECT ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
+    join software ps on ps.id=ro.id
+    where cast(ps.year as int)>2003
+    group by ro.organization),
+    allpubsshare as (
+                        select pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
+                        join pubs_oa on allpubs.organization=pubs_oa.organization),
+    alldatasetssshare as (
+                             select datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
+                             from alldatasets
+                             join datasets_oa on alldatasets.organization=datasets_oa.organization),
+    allsoftwaresshare as (
+                             select software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
+                             from allsoftware
+                             join software_oa on allsoftware.organization=software_oa.organization)
+select allpubsshare.organization,
+       (p+isnull(s,0)+isnull(d,0))/(1+(case when s is null then 0 else 1 end)
+           +(case when d is null then 0 else 1 end))
+           org_openess FROM allpubsshare
+                                left outer join (select organization,d from
+    alldatasetssshare) tmp1
+                                                on tmp1.organization=allpubsshare.organization
+                                left outer join (select organization,s from
+    allsoftwaresshare) tmp2
+                                                on tmp2.organization=allpubsshare.organization;
+
+compute stats indi_org_openess;
+
+create table indi_org_openess_year stored as parquet as
+    WITH pubs_oa as (
+        SELECT r.year, ro.organization, count(distinct r.id) no_oapubs FROM publication r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization,r.year),
+    datasets_oa as (
+                       SELECT r.year,ro.organization, count(distinct r.id) no_oadatasets FROM dataset r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization, r.year),
+    software_oa as (
+                       SELECT r.year,ro.organization, count(distinct r.id) no_oasoftware FROM software r
+    join result_organization ro on ro.id=r.id
+    join result_instance ri on ri.id=r.id
+    where (ri.accessright = 'Open Access' or ri.accessright = 'Embargo'  or ri.accessright = 'Open Source')
+    and cast(r.year as int)>2003
+    group by ro.organization, r.year),
+    allpubs as (
+                   SELECT p.year,ro.organization organization, count(ro.id) no_allpubs FROM result_organization ro
+    join publication p on p.id=ro.id where cast(p.year as int)>2003
+    group by ro.organization, p.year),
+    alldatasets as (
+                       SELECT d.year, ro.organization organization, count(ro.id) no_alldatasets FROM result_organization ro
+    join dataset d on d.id=ro.id where cast(d.year as int)>2003
+    group by ro.organization, d.year),
+    allsoftware as (
+                       SELECT s.year,ro.organization organization, count(ro.id) no_allsoftware FROM result_organization ro
+    join software s on s.id=ro.id where cast(s.year as int)>2003
+    group by ro.organization, s.year),
+    allpubsshare as (
+                        select allpubs.year, pubs_oa.organization, pubs_oa.no_oapubs/allpubs.no_allpubs p from allpubs
+                        join pubs_oa on allpubs.organization=pubs_oa.organization where cast(allpubs.year as INT)=cast(pubs_oa.year as int)),
+    alldatasetssshare as (
+                             select alldatasets.year, datasets_oa.organization, datasets_oa.no_oadatasets/alldatasets.no_alldatasets d
+                             from alldatasets
+                             join datasets_oa on alldatasets.organization=datasets_oa.organization where cast(alldatasets.year as INT)=cast(datasets_oa.year as int)),
+    allsoftwaresshare as (
+                             select allsoftware.year, software_oa.organization, software_oa.no_oasoftware/allsoftware.no_allsoftware s
+                             from allsoftware
+                             join software_oa on allsoftware.organization=software_oa.organization where cast(allsoftware.year as INT)=cast(software_oa.year as int))
+select allpubsshare.year, allpubsshare.organization,
+       (p+isnull(s,0)+isnull(d,0))/(1+(case when s is null then 0 else 1 end)
+           +(case when d is null then 0 else 1 end))
+           org_openess FROM allpubsshare
+                                left outer join (select year, organization,d from
+    alldatasetssshare) tmp1
+                                                on tmp1.organization=allpubsshare.organization and tmp1.year=allpubsshare.year
+                                left outer join (select year, organization,s from
+    allsoftwaresshare) tmp2
+                                                on tmp2.organization=allpubsshare.organization and tmp2.year=allpubsshare.year;
+
+compute stats indi_org_openess_year;
+
+create table indi_pub_has_preprint stored as parquet as
+select distinct p.id, coalesce(has_preprint, 0) as has_preprint
+from publication_classifications p
+         left outer join (
+    select p.id, 1 as has_preprint
+    from publication_classifications p
+    where p.type='Preprint') tmp
+                         on p.id= tmp.id;
+
+compute stats indi_pub_has_preprint;
+
+create table indi_pub_in_subscribed stored as parquet as
+select distinct p.id, coalesce(is_subscription, 0) as is_subscription
+from publication p
+         left outer join(
+    select  p.id, 1 as is_subscription from publication p
+                                                join indi_pub_gold_oa g on p.id=g.id
+                                                join indi_pub_hybrid h on p.id=h.id
+                                                join indi_pub_in_transformative t on p.id=t.id
+    where g.is_gold=0 and h.is_hybrid=0 and t.is_transformative=0) tmp
+                        on p.id=tmp.id;
+
+compute stats indi_pub_in_subscribed;
+
+create table indi_result_with_pid as
+select distinct p.id, coalesce(result_with_pid, 0) as result_with_pid
+from result p
+         left outer join (
+    select p.id, 1 as result_with_pid
+    from result_pids p) tmp
+                         on p.id= tmp.id;
+
+compute stats indi_result_with_pid;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql

@@ -38,7 +38,14 @@ create table TARGET.result stored as parquet as
              'openorgs____::ec3665affa01aeafa28b7852c4176dbd', --Rudjer Boskovic Institute
              'openorgs____::5f31346d444a7f06a28c880fb170b0f6', --Ghent University
              'openorgs____::2dbe47117fd5409f9c61620813456632', --University of Luxembourg
-             'openorgs____::6445d7758d3a40c4d997953b6632a368' --National Institute of Informatics (NII)
+             'openorgs____::6445d7758d3a40c4d997953b6632a368', --National Institute of Informatics (NII)
+
+             'openorgs____::b77c01aa15de3675da34277d48de2ec1', -- Valencia Catholic University Saint Vincent Martyr
+             'openorgs____::7fe2f66cdc43983c6b24816bfe9cf6a0', -- Unviersity of Warsaw
+             'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly
+             'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete
+             'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus
+             'openorgs____::4ac562f0376fce3539504567649cb373' -- University of Patras
         ) )) foo;
 compute stats TARGET.result;
 
@@ -107,6 +114,9 @@ compute stats TARGET.result_sources;
 create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
 compute stats TARGET.result_topics;
 
+create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_fos;
+
 create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
 create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
 create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql

@@ -11,13 +11,13 @@ where p.datainfo.deletedbyinference=false  and p.datainfo.invisible=false;
 CREATE TABLE ${stats_db_name}.project_organizations STORED AS PARQUET AS
 SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
 from ${openaire_db_name}.relation r
-WHERE r.reltype = 'projectOrganization'
+WHERE r.reltype = 'projectOrganization' and r.source like '40|%'
   and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
 
 CREATE TABLE ${stats_db_name}.project_results STORED AS PARQUET AS
 SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result, r.datainfo.provenanceaction.classname as provenance
 FROM ${openaire_db_name}.relation r
-WHERE r.reltype = 'resultProject'
+WHERE r.reltype = 'resultProject' and r.target like '40|%'
   and r.datainfo.deletedbyinference = false and r.datainfo.invisible=false;
 
 create table ${stats_db_name}.project_classification STORED AS PARQUET as

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql

@@ -123,6 +123,16 @@ UNION ALL
 SELECT *
 FROM ${stats_db_name}.otherresearchproduct_topics;
 
+create table ${stats_db_name}.result_fos stored as parquet as
+with
+    lvl1 as (select id, topic from ${stats_db_name}.result_topics where topic like '__ %' and type='Fields of Science and Technology classification'),
+    lvl2 as (select id, topic from ${stats_db_name}.result_topics where topic like '____ %' and type='Fields of Science and Technology classification'),
+    lvl3 as (select id, topic from ${stats_db_name}.result_topics where topic like '______ %' and type='Fields of Science and Technology classification')
+select lvl1.id, lvl1.topic as lvl1, lvl2.topic as lvl2, lvl3.topic as lvl3
+from lvl1
+ join lvl2 on lvl1.id=lvl2.id and substr(lvl2.topic, 1, 2)=substr(lvl1.topic, 1, 2)
+ join lvl3 on lvl3.id=lvl1.id and substr(lvl3.topic, 1, 4)=substr(lvl2.topic, 1, 4);
+
 CREATE TABLE ${stats_db_name}.result_organization STORED AS PARQUET AS
 SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
 FROM ${openaire_db_name}.relation r
@@ -135,3 +145,4 @@ select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS da
 FROM ${stats_db_name}.result r
          JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
          JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
+