restored complete provision workflow
This commit is contained in:
parent
2d77d3a388
commit
216975c4ec
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@ -97,7 +97,18 @@
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</configuration>
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</configuration>
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</global>
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</global>
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<start to="prepare_relations"/>
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<start to="resume_from"/>
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<decision name="resume_from">
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<switch>
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<case to="prepare_relations">${wf:conf('resumeFrom') eq 'prepare_relations'}</case>
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<case to="fork_join_related_entities">${wf:conf('resumeFrom') eq 'fork_join_related_entities'}</case>
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<case to="fork_join_all_entities">${wf:conf('resumeFrom') eq 'fork_join_all_entities'}</case>
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<case to="convert_to_xml">${wf:conf('resumeFrom') eq 'convert_to_xml'}</case>
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<case to="to_solr_index">${wf:conf('resumeFrom') eq 'to_solr_index'}</case>
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<default to="prepare_relations"/>
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</switch>
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</decision>
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<kill name="Kill">
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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@ -124,12 +135,475 @@
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<arg>--outputPath</arg><arg>${workingDir}/relation</arg>
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<arg>--outputPath</arg><arg>${workingDir}/relation</arg>
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<arg>--relPartitions</arg><arg>5000</arg>
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<arg>--relPartitions</arg><arg>5000</arg>
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</spark>
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</spark>
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<ok to="fork_join_related_entities"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_join_related_entities">
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<path start="join_relation_publication"/>
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<path start="join_relation_dataset"/>
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<path start="join_relation_otherresearchproduct"/>
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<path start="join_relation_software"/>
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<path start="join_relation_datasource"/>
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<path start="join_relation_organization"/>
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<path start="join_relation_project"/>
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</fork>
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<action name="join_relation_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = publication.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/publication</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/publication</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = dataset.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/dataset</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/dataset</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_otherresearchproduct">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = otherresearchproduct.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/otherresearchproduct</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/otherresearchproduct</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = software.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/software</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/software</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_datasource">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = datasource.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/datasource</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/datasource</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_organization">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = organization.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/organization</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/organization</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<action name="join_relation_project">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[relation.target = project.id]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase1</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputRelationsPath</arg><arg>${workingDir}/relation</arg>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/project</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_partial/project</arg>
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</spark>
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<ok to="wait_joins"/>
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<error to="Kill"/>
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</action>
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<join name="wait_joins" to="fork_join_all_entities"/>
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<fork name="fork_join_all_entities">
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<path start="join_publication_relations"/>
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<path start="join_dataset_relations"/>
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<path start="join_otherresearchproduct_relations"/>
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<path start="join_software_relations"/>
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<path start="join_datasource_relations"/>
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<path start="join_organization_relations"/>
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<path start="join_project_relations"/>
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</fork>
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<action name="join_publication_relations">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Join[publication.id = relatedEntity.source]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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|
--driver-memory=${sparkDriverMemoryForJoining}
|
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|
--conf spark.extraListeners=${spark2ExtraListeners}
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|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=15360
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/publication</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
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<arg>--outputPath</arg><arg>${workingDir}/join_entities/publication</arg>
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<arg>--numPartitions</arg><arg>30000</arg>
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|
</spark>
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|
<ok to="wait_join_phase2"/>
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|
<error to="Kill"/>
|
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|
</action>
|
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|
|
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|
<action name="join_dataset_relations">
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|
<spark xmlns="uri:oozie:spark-action:0.2">
|
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|
<master>yarn</master>
|
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|
<mode>cluster</mode>
|
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<name>Join[dataset.id = relatedEntity.source]</name>
|
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|
<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
|
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|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
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|
<spark-opts>
|
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|
--executor-cores=${sparkExecutorCoresForJoining}
|
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|
--executor-memory=${sparkExecutorMemoryForJoining}
|
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|
--driver-memory=${sparkDriverMemoryForJoining}
|
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|
--conf spark.extraListeners=${spark2ExtraListeners}
|
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|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
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|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
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--conf spark.sql.shuffle.partitions=7680
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|
--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
|
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<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/dataset</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
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<arg>--outputPath</arg><arg>${workingDir}/join_entities/dataset</arg>
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<arg>--numPartitions</arg><arg>20000</arg>
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</spark>
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|
<ok to="wait_join_phase2"/>
|
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<error to="Kill"/>
|
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|
</action>
|
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|
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<action name="join_otherresearchproduct_relations">
|
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<spark xmlns="uri:oozie:spark-action:0.2">
|
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<master>yarn</master>
|
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|
<mode>cluster</mode>
|
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<name>Join[otherresearchproduct.id = relatedEntity.source]</name>
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<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
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<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
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<spark-opts>
|
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|
--executor-cores=${sparkExecutorCoresForJoining}
|
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--executor-memory=${sparkExecutorMemoryForJoining}
|
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|
--driver-memory=${sparkDriverMemoryForJoining}
|
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--conf spark.extraListeners=${spark2ExtraListeners}
|
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=7680
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/otherresearchproduct</arg>
|
||||||
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
|
||||||
|
<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/join_entities/otherresearchproduct</arg>
|
||||||
|
<arg>--numPartitions</arg><arg>10000</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="wait_join_phase2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="join_software_relations">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>Join[software.id = relatedEntity.source]</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-cores=${sparkExecutorCoresForJoining}
|
||||||
|
--executor-memory=${sparkExecutorMemoryForJoining}
|
||||||
|
--driver-memory=${sparkDriverMemoryForJoining}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=3840
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/software</arg>
|
||||||
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
|
||||||
|
<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/join_entities/software</arg>
|
||||||
|
<arg>--numPartitions</arg><arg>10000</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="wait_join_phase2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="join_datasource_relations">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>Join[datasource.id = relatedEntity.source]</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-cores=${sparkExecutorCoresForJoining}
|
||||||
|
--executor-memory=${sparkExecutorMemoryForJoining}
|
||||||
|
--driver-memory=${sparkDriverMemoryForJoining}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=7680
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/datasource</arg>
|
||||||
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
|
||||||
|
<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/join_entities/datasource</arg>
|
||||||
|
<arg>--numPartitions</arg><arg>1000</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="wait_join_phase2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="join_organization_relations">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>Join[organization.id = relatedEntity.source]</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-cores=${sparkExecutorCoresForJoining}
|
||||||
|
--executor-memory=${sparkExecutorMemoryForJoining}
|
||||||
|
--driver-memory=${sparkDriverMemoryForJoining}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=7680
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/organization</arg>
|
||||||
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
|
||||||
|
<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/join_entities/organization</arg>
|
||||||
|
<arg>--numPartitions</arg><arg>20000</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="wait_join_phase2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="join_project_relations">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>Join[project.id = relatedEntity.source]</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.CreateRelatedEntitiesJob_phase2</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-cores=${sparkExecutorCoresForJoining}
|
||||||
|
--executor-memory=${sparkExecutorMemoryForJoining}
|
||||||
|
--driver-memory=${sparkDriverMemoryForJoining}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=3840
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputEntityPath</arg><arg>${inputGraphRootPath}/project</arg>
|
||||||
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
|
||||||
|
<arg>--inputRelatedEntitiesPath</arg><arg>${workingDir}/join_partial</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/join_entities/project</arg>
|
||||||
|
<arg>--numPartitions</arg><arg>10000</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="wait_join_phase2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<join name="wait_join_phase2" to="convert_to_xml"/>
|
||||||
|
|
||||||
|
<action name="convert_to_xml">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>convert_to_xml</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.XmlConverterJob</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-cores=${sparkExecutorCoresForJoining}
|
||||||
|
--executor-memory=${sparkExecutorMemoryForJoining}
|
||||||
|
--driver-memory=${sparkDriverMemoryForJoining}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.sql.shuffle.partitions=3840
|
||||||
|
--conf spark.network.timeout=${sparkNetworkTimeout}
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputPath</arg><arg>${workingDir}/join_entities</arg>
|
||||||
|
<arg>--outputPath</arg><arg>${workingDir}/xml</arg>
|
||||||
|
<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
|
||||||
|
<arg>--otherDsTypeId</arg><arg>${otherDsTypeId}</arg>
|
||||||
|
</spark>
|
||||||
|
<ok to="to_solr_index"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="to_solr_index">
|
||||||
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||||
|
<master>yarn</master>
|
||||||
|
<mode>cluster</mode>
|
||||||
|
<name>to_solr_index</name>
|
||||||
|
<class>eu.dnetlib.dhp.oa.provision.XmlIndexingJob</class>
|
||||||
|
<jar>dhp-graph-provision-${projectVersion}.jar</jar>
|
||||||
|
<spark-opts>
|
||||||
|
--executor-memory=${sparkExecutorMemoryForIndexing}
|
||||||
|
--driver-memory=${sparkDriverMemoryForIndexing}
|
||||||
|
--conf spark.dynamicAllocation.enabled=true
|
||||||
|
--conf spark.dynamicAllocation.maxExecutors=${sparkExecutorCoresForIndexing}
|
||||||
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||||
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||||
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||||
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||||
|
--conf spark.speculation=false
|
||||||
|
--conf spark.hadoop.mapreduce.map.speculative=false
|
||||||
|
--conf spark.hadoop.mapreduce.reduce.speculative=false
|
||||||
|
</spark-opts>
|
||||||
|
<arg>--inputPath</arg><arg>${workingDir}/xml</arg>
|
||||||
|
<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
|
||||||
|
<arg>--format</arg><arg>${format}</arg>
|
||||||
|
<arg>--batchSize</arg><arg>${batchSize}</arg>
|
||||||
|
</spark>
|
||||||
<ok to="End"/>
|
<ok to="End"/>
|
||||||
<error to="Kill"/>
|
<error to="Kill"/>
|
||||||
</action>
|
</action>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<end name="End"/>
|
<end name="End"/>
|
||||||
|
|
||||||
</workflow-app>
|
</workflow-app>
|
||||||
Loading…
Reference in New Issue