D-Net
/
dnet-hadoop
14
5
Fork 11
Code Issues 14 Pull Requests 13 Projects 2 Releases 2 Wiki Activity

removed 'stored as parquet' from views..

This commit is contained in:
Antonis Lempesis 2021-12-13 23:05:00 +02:00 committed by dimitrispie
parent 2754c3dd62
commit 1ddea4f442
4 changed files with 86 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

57
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/copyDataToImpalaCluster.sh Normal file
View File

@ -0,0 +1,57 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
function copydb() {
db=$1
# copy the databases from ocean to impala
#echo "copying $db"
hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn2.openaire.eu:8020/tmp
# change ownership to impala
hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/${db}.db
# create the databases
impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade";
impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}";
echo "creating schema for ${db}"
for i in `impala-shell -d ${db} --delimited -q "show tables"`;
do
impala-shell -d ${db} --delimited -q "show create table $i";
done | sed 's/"$/;/' | sed 's/^"//' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
# run the same command twice because we may have failures in the first run (due to views pointing to the same db)
for i in `impala-shell -d ${db} --delimited -q "show tables"`;
do
impala-shell -d ${db} --delimited -q "show create table $i";
done | sed 's/"$/;/' | sed 's/^"//' | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
# load the data from /tmp in the respective tables
echo "copying data in tables and computing stats"
for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`;
do
impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/${db}.db/$i' into table $i";
impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i";
done
# deleting the remaining directory from hdfs
hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/${db}.db
}
STATS_DB=$1
MONITOR_DB=$2
OBSERVATORY_DB=$3
EXT_DB=$4
copydb $EXT_DB
copydb $STATS_DB
copydb $MONITOR_DB
copydb $OBSERVATORY_DB

27
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizeImpalaCluster.sh Normal file
View File

@ -0,0 +1,27 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
function createShadowDB() {
SOURCE=$1
SHADOW=$2
impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${SHADOW}";
impala-shell -i impala-cluster-dn1.openaire.eu -d ${SHADOW} -q "show tables" | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -f -
}
STATS_DB=$1
STATS_DB_SHADOW=$2
MONITOR_DB=$3
MONITOR_DB_SHADOW=$4
OBSERVATORY_DB=$5
OBSERVATORY_DB_SHADOW=$6
createShadowDB $STATS_DB $STATS_DB_SHADOW
createShadowDB $MONITOR_DB $MONITOR_DB_SHADOW
createShadowDB $OBSERVATORY_DB $OBSERVATORY_DB_SHADOW

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
View File

@ -104,7 +104,7 @@ WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication STORED AS PARQUET AS
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
SELECT result_projects.id AS result,
result_projects.project AS project_results,
result.date as resultdate,

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
View File

@ -26,7 +26,7 @@ select substr(r.id, 4) as id, inst.refereed.classname as refereed
from ${openaire_db_name}.otherresearchproduct r lateral view explode(r.instance) instances as inst
where r.datainfo.deletedbyinference=false and r.datainfo.invisible = FALSE;
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed STORED AS PARQUET as
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed as
select * from ${stats_db_name}.publication_refereed
union all
select * from ${stats_db_name}.dataset_refereed