From 199123b74b3a988a2cadf5bec843998e734d494b Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 16 Jul 2021 17:30:27 +0200 Subject: [PATCH] DoiBoost AccessRigh #4362 - Fixed issue on date formatting. Added test method and associated resource --- .../doiboost/DoiBoostMappingUtil.scala | 50 +- .../crossref/CrossrefMappingTest.scala | 21 + .../publication_license_embargo_datetime.json | 1538 +++++++++++++++++ 3 files changed, 1600 insertions(+), 9 deletions(-) create mode 100644 dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo_datetime.json diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/DoiBoostMappingUtil.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/DoiBoostMappingUtil.scala index 6a2f0e45f..b0c6e009b 100644 --- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/DoiBoostMappingUtil.scala +++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/DoiBoostMappingUtil.scala @@ -149,18 +149,50 @@ object DoiBoostMappingUtil { //OUP (BUT ONLY AFTER 12 MONTHS FROM THE PUBLICATION DATE, OTHERWISE THEY ARE EMBARGOED) if(license.equals("https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model")){ val now = java.time.LocalDate.now - val formatter = DateTimeFormatter.ofPattern("yyyy-MM-dd") - val pub_date = LocalDate.parse(date, formatter) + try{ + val pub_date = LocalDate.parse(date, DateTimeFormatter.ofPattern("yyyy-MM-dd")) + if (((now.toEpochDay - pub_date.toEpochDay)/365.0) > 1){ + val oaq : AccessRight = getOpenAccessQualifier() + oaq.setOpenAccessRoute(OpenAccessRoute.hybrid) + return oaq + } + else{ + return getEmbargoedAccessQualifier() + } + }catch { + case e: Exception => { + try{ + val pub_date = LocalDate.parse(date, DateTimeFormatter.ofPattern("yyyy-MM-dd'T'HH:mm:ss'Z'")) + if (((now.toEpochDay - pub_date.toEpochDay)/365.0) > 1){ + val oaq : AccessRight = getOpenAccessQualifier() + oaq.setOpenAccessRoute(OpenAccessRoute.hybrid) + return oaq + } + else{ + return getEmbargoedAccessQualifier() + } + }catch{ + case ex: Exception => return getClosedAccessQualifier() + } + } - if (((now.toEpochDay - pub_date.toEpochDay)/365.0) > 1){ - val oaq : AccessRight = getOpenAccessQualifier() - oaq.setOpenAccessRoute(OpenAccessRoute.hybrid) - return oaq - } - else{ - return getEmbargoedAccessQualifier() } + + //val formatter = DateTimeFormatter.ofPattern("yyyy-MM-dd") + + + + // val pub_date = LocalDate.parse(date, formatter) + +// if (((now.toEpochDay - pub_date.toEpochDay)/365.0) > 1){ +// val oaq : AccessRight = getOpenAccessQualifier() +// oaq.setOpenAccessRoute(OpenAccessRoute.hybrid) +// return oaq +// } +// else{ +// return getEmbargoedAccessQualifier() +// } } return getClosedAccessQualifier() diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/crossref/CrossrefMappingTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/crossref/CrossrefMappingTest.scala index 63555bcbd..75fb3f787 100644 --- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/crossref/CrossrefMappingTest.scala +++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/crossref/CrossrefMappingTest.scala @@ -589,6 +589,27 @@ class CrossrefMappingTest { } + @Test + def testLicenseEmbargoDateTime() :Unit = { + val json = Source.fromInputStream(getClass.getResourceAsStream("publication_license_embargo_datetime.json")).mkString + assertNotNull(json) + assertFalse(json.isEmpty); + + val resultList: List[Oaf] = Crossref2Oaf.convert(json) + + assertTrue(resultList.nonEmpty) + + + val item : Result = resultList.filter(p => p.isInstanceOf[Result]).head.asInstanceOf[Result] + + assertTrue(item.getInstance().asScala exists (i => i.getLicense.getValue.equals("https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model"))) + assertTrue(item.getInstance().asScala exists (i => i.getAccessright.getClassid.equals("EMBARGO"))) + assertTrue(item.getInstance().asScala exists (i => i.getAccessright.getOpenAccessRoute == null)) + mapper.getSerializationConfig.enable(SerializationConfig.Feature.INDENT_OUTPUT) + println(mapper.writeValueAsString(item)) + + } + } diff --git a/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo_datetime.json b/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo_datetime.json new file mode 100644 index 000000000..c84e16350 --- /dev/null +++ b/dhp-workflows/dhp-doiboost/src/test/resources/eu/dnetlib/doiboost/crossref/publication_license_embargo_datetime.json @@ -0,0 +1,1538 @@ +{ +"indexed": { +"date-parts": [ +[ +2021, +7, +2 +] +], +"date-time": "2021-07-02T07:30:10Z", +"timestamp": 1625211010708 +}, +"reference-count": 83, +"publisher": "Springer Science and Business Media LLC", +"issue": "5", +"license": [ +{ +"URL": "https://www.springer.com/tdm", +"start": { +"date-parts": [ +[ +2021, +2, +22 +] +], +"date-time": "2021-02-22T00:00:00Z", +"timestamp": 1613952000000 +}, +"delay-in-days": 0, +"content-version": "tdm" +}, +{ +"URL": "https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model", +"start": { +"date-parts": [ +[ +2021, +2, +22 +] +], +"date-time": "2021-02-22T00:00:00Z", +"timestamp": 1613952000000 +}, +"delay-in-days": 0, +"content-version": "vor" +} +], +"content-domain": { +"domain": [ +"link.springer.com" +], +"crossmark-restriction": false +}, +"short-container-title": [ +"Nat Astron" +], +"published-print": { +"date-parts": [ +[ +2021, +5 +] +] +}, +"DOI": "10.1038/s41550-020-01295-8", +"type": "journal-article", +"created": { +"date-parts": [ +[ +2021, +2, +22 +] +], +"date-time": "2021-02-22T17:03:42Z", +"timestamp": 1614013422000 +}, +"page": "510-518", +"update-policy": "http://dx.doi.org/10.1007/springer_crossmark_policy", +"source": "Crossref", +"is-referenced-by-count": 6, +"title": [ +"A tidal disruption event coincident with a high-energy neutrino" +], +"prefix": "10.1038", +"volume": "5", +"author": [ +{ +"ORCID": "http://orcid.org/0000-0003-2434-0387", +"authenticated-orcid": false, +"given": "Robert", +"family": "Stein", +"sequence": "first", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-3859-8074", +"authenticated-orcid": false, +"given": "Sjoert van", +"family": "Velzen", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-8594-8666", +"authenticated-orcid": false, +"given": "Marek", +"family": "Kowalski", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Anna", +"family": "Franckowiak", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-3703-5154", +"authenticated-orcid": false, +"given": "Suvi", +"family": "Gezari", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-3124-2814", +"authenticated-orcid": false, +"given": "James C. A.", +"family": "Miller-Jones", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Sara", +"family": "Frederick", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-0466-3779", +"authenticated-orcid": false, +"given": "Itai", +"family": "Sfaradi", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Michael F.", +"family": "Bietenholz", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-5936-1156", +"authenticated-orcid": false, +"given": "Assaf", +"family": "Horesh", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Rob", +"family": "Fender", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-2403-4582", +"authenticated-orcid": false, +"given": "Simone", +"family": "Garrappa", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-2184-6430", +"authenticated-orcid": false, +"given": "Tomás", +"family": "Ahumada", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Igor", +"family": "Andreoni", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Justin", +"family": "Belicki", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-8018-5348", +"authenticated-orcid": false, +"given": "Eric C.", +"family": "Bellm", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Markus", +"family": "Böttcher", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Valery", +"family": "Brinnel", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Rick", +"family": "Burruss", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-1673-970X", +"authenticated-orcid": false, +"given": "S. Bradley", +"family": "Cenko", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-8262-2924", +"authenticated-orcid": false, +"given": "Michael W.", +"family": "Coughlin", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-2292-0441", +"authenticated-orcid": false, +"given": "Virginia", +"family": "Cunningham", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Andrew", +"family": "Drake", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Glennys R.", +"family": "Farrar", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Michael", +"family": "Feeney", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Ryan J.", +"family": "Foley", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-3653-5598", +"authenticated-orcid": false, +"given": "Avishay", +"family": "Gal-Yam", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "V. Zach", +"family": "Golkhou", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-4163-4996", +"authenticated-orcid": false, +"given": "Ariel", +"family": "Goobar", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-3168-0139", +"authenticated-orcid": false, +"given": "Matthew J.", +"family": "Graham", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Erica", +"family": "Hammerstein", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-3367-3415", +"authenticated-orcid": false, +"given": "George", +"family": "Helou", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-9878-7889", +"authenticated-orcid": false, +"given": "Tiara", +"family": "Hung", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Mansi M.", +"family": "Kasliwal", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-5740-7747", +"authenticated-orcid": false, +"given": "Charles D.", +"family": "Kilpatrick", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-5105-344X", +"authenticated-orcid": false, +"given": "Albert K. H.", +"family": "Kong", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-6540-1484", +"authenticated-orcid": false, +"given": "Thomas", +"family": "Kupfer", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-2451-5482", +"authenticated-orcid": false, +"given": "Russ R.", +"family": "Laher", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-2242-0244", +"authenticated-orcid": false, +"given": "Ashish A.", +"family": "Mahabal", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-8532-9395", +"authenticated-orcid": false, +"given": "Frank J.", +"family": "Masci", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-0280-7484", +"authenticated-orcid": false, +"given": "Jannis", +"family": "Necker", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-8342-6274", +"authenticated-orcid": false, +"given": "Jakob", +"family": "Nordin", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Daniel A.", +"family": "Perley", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-8121-2560", +"authenticated-orcid": false, +"given": "Mickael", +"family": "Rigault", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-7788-628X", +"authenticated-orcid": false, +"given": "Simeon", +"family": "Reusch", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Hector", +"family": "Rodriguez", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0002-7559-315X", +"authenticated-orcid": false, +"given": "César", +"family": "Rojas-Bravo", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-7648-4142", +"authenticated-orcid": false, +"given": "Ben", +"family": "Rusholme", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-4401-0430", +"authenticated-orcid": false, +"given": "David L.", +"family": "Shupe", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-9898-5597", +"authenticated-orcid": false, +"given": "Leo P.", +"family": "Singer", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0003-1546-6615", +"authenticated-orcid": false, +"given": "Jesper", +"family": "Sollerman", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Maayane T.", +"family": "Soumagnac", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Daniel", +"family": "Stern", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Kirsty", +"family": "Taggart", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Jakob", +"family": "van Santen", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Charlotte", +"family": "Ward", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"given": "Patrick", +"family": "Woudt", +"sequence": "additional", +"affiliation": [ + +] +}, +{ +"ORCID": "http://orcid.org/0000-0001-6747-8509", +"authenticated-orcid": false, +"given": "Yuhan", +"family": "Yao", +"sequence": "additional", +"affiliation": [ + +] +} +], +"member": "297", +"published-online": { +"date-parts": [ +[ +2021, +2, +22 +] +] +}, +"reference": [ +{ +"key": "1295_CR1", +"doi-asserted-by": "crossref", +"first-page": "P03012", +"DOI": "10.1088/1748-0221/12/03/P03012", +"volume": "12", +"author": "MG Aartsen", +"year": "2017", +"unstructured": "Aartsen, M. G. et al. The IceCube Neutrino Observatory: instrumentation and online systems. J. Instrum. 12, P03012 (2017).", +"journal-title": "J. Instrum." +}, +{ +"key": "1295_CR2", +"unstructured": "Stein, R. IceCube-191001A—IceCube observation of a high-energy neutrino candidate event. GCN Circ. 25913 (2019)." +}, +{ +"key": "1295_CR3", +"doi-asserted-by": "crossref", +"first-page": "018002", +"DOI": "10.1088/1538-3873/aaecbe", +"volume": "131", +"author": "EC Bellm", +"year": "2019", +"unstructured": "Bellm, E. C. et al. The Zwicky Transient Facility: system overview, performance, and first results. Publ. Astron. Soc. Pac. 131, 018002 (2019).", +"journal-title": "Publ. Astron. Soc. Pac." +}, +{ +"key": "1295_CR4", +"doi-asserted-by": "crossref", +"first-page": "533", +"DOI": "10.1016/j.astropartphys.2007.03.005", +"volume": "27", +"author": "M Kowalski", +"year": "2007", +"unstructured": "Kowalski, M. & Mohr, A. Detecting neutrino transients with optical follow-up observations. Astropart. Phys. 27, 533–538 (2007).", +"journal-title": "Astropart. Phys." +}, +{ +"key": "1295_CR5", +"doi-asserted-by": "crossref", +"first-page": "329", +"DOI": "10.1088/0004-637X/693/1/329", +"volume": "693", +"author": "GR Farrar", +"year": "2009", +"unstructured": "Farrar, G. R. & Gruzinov, A. Giant AGN flares and cosmic ray bursts. Astrophys. J. 693, 329–332 (2009).", +"journal-title": "Astrophys. J." +}, +{ +"key": "1295_CR6", +"doi-asserted-by": "crossref", +"first-page": "1354", +"DOI": "10.1093/mnras/stx863", +"volume": "469", +"author": "L Dai", +"year": "2017", +"unstructured": "Dai, L. & Fang, K. Can tidal disruption events produce the IceCube neutrinos? Mon. Not. R. Astron. Soc. 469, 1354–1359 (2017).", +"journal-title": "Mon. Not. R. Astron. Soc." +}, +{ +"key": "1295_CR7", +"doi-asserted-by": "crossref", +"first-page": "114", +"DOI": "10.3847/1538-4357/ab44ca", +"volume": "886", +"author": "K Hayasaki", +"year": "2019", +"unstructured": "Hayasaki, K. & Yamazaki, R. Neutrino emissions from tidal disruption remnants. Astrophys. J. 886, 114 (2019).", +"journal-title": "Astrophys. J." +}, +{ +"key": "1295_CR8", +"unstructured": "Farrar, G. R. & Piran, T. Tidal disruption jets as the source of Ultra-High Energy Cosmic Rays. Preprint at https://arxiv.org/abs/1411.0704 (2014)." +}, +{ +"key": "1295_CR9", +"doi-asserted-by": "crossref", +"first-page": "3", +"DOI": "10.3847/1538-4357/aa6344", +"volume": "838", +"author": "N Senno", +"year": "2017", +"unstructured": "Senno, N., Murase, K. & Mészáros, P. High-energy neutrino flares from X-ray bright and dark tidal disruption events. Astrophys. J. 838, 3 (2017).", +"journal-title": "Astrophys. J." +}, +{ +"key": "1295_CR10", +"doi-asserted-by": "crossref", +"first-page": "083005", +"DOI": "10.1103/PhysRevD.93.083005", +"volume": "93", +"author": "XY Wang", +"year": "2016", +"unstructured": "Wang, X. Y. & Liu, R. Y. Tidal disruption jets of supermassive black holes as hidden sources of cosmic rays: explaining the IceCube TeV–PeV neutrinos. Phys. Rev. D 93, 083005 (2016).", +"journal-title": "Phys. Rev. D" +}, +{ +"key": "1295_CR11", +"doi-asserted-by": "crossref", +"first-page": "123001", +"DOI": "10.1103/PhysRevD.95.123001", +"volume": "95", +"author": "C Lunardini", +"year": "2017", +"unstructured": "Lunardini, C. & Winter, W. High energy neutrinos from the tidal disruption of stars. Phys. Rev. D 95, 123001 (2017).", +"journal-title": "Phys. Rev. D" +}, +{ +"key": "1295_CR12", +"unstructured": "Stein, R., Franckowiak, A., Necker, J., Gezari, S. & Velzen, S. V. Candidate counterparts to IceCube-191001A with ZTF. Astron. Telegr. 13160 (2019)." +}, +{ +"key": "1295_CR13", +"doi-asserted-by": "crossref", +"first-page": "078001", +"DOI": "10.1088/1538-3873/ab006c", +"volume": "131", +"author": "MJ Graham", +"year": "2019", +"unstructured": "Graham, M. J. et al. The Zwicky Transient Facility: science objectives. Publ. Astron. Soc. Pac. 131, 078001 (2019).", +"journal-title": "Publ. Astron. Soc. Pac." +}, +{ +"key": "1295_CR14", +"unstructured": "Nordin, J. et al. TNS Astronomical Transient Report 33340 (2019)." +}, +{ +"key": "1295_CR15", +"unstructured": "Nicholl, M. et al. ePESSTO+ classification of optical transients. Astron. Telegr. 12752 (2019)." +}, +{ +"key": "1295_CR16", +"unstructured": "van Velzen, S. et al. Seventeen tidal disruption events from the first half of ZTF survey observations: entering a new era of population studies. Preprint at https://arxiv.org/abs/2001.01409 (2020)." +}, +{ +"key": "1295_CR17", +"doi-asserted-by": "crossref", +"first-page": "82", +"DOI": "10.3847/1538-4357/ab1844", +"volume": "878", +"author": "S van Velzen", +"year": "2019", +"unstructured": "van Velzen, S. et al. Late-time UV observations of tidal disruption flares reveal unobscured, compact accretion disks. Astrophys. 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