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minor fix

This commit is contained in:
Sandro La Bruzzo 2020-05-22 20:51:42 +02:00
parent 72278b9375
commit 147dd389bf
2 changed files with 41 additions and 20 deletions
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35
dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/SparkGenerateDoiBoost.scala
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@ -23,7 +23,6 @@ object SparkGenerateDoiBoost {
.master(parser.get("master")).getOrCreate() .master(parser.get("master")).getOrCreate()
val crossrefPublicationPath = parser.get("crossrefPublicationPath") val crossrefPublicationPath = parser.get("crossrefPublicationPath")
val crossrefDatasetPath = parser.get("crossrefDatasetPath") val crossrefDatasetPath = parser.get("crossrefDatasetPath")
val uwPublicationPath = parser.get("uwPublicationPath") val uwPublicationPath = parser.get("uwPublicationPath")
@ -46,16 +45,38 @@ object SparkGenerateDoiBoost {
logger.info("Phase 2) Join Crossref with UnpayWall") logger.info("Phase 2) Join Crossref with UnpayWall")
val crossrefPublication: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/crossrefPublication").as[Publication].map(p => (p.getId, p)) val crossrefPublication: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/crossrefPublication").as[Publication].map(p => (p.getId, p))
val uwPublication:Dataset[(String,Publication)] = spark.read.load(s"$workingDirPath/crossrefPublication").as[Publication].map(p =>(p.getId, p) ) val uwPublication: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/uwPublication").as[Publication].map(p => (p.getId, p))
crossrefPublication.joinWith(uwPublication, crossrefPublication("_1").equalTo(uwPublication("_1")),"left").map(item => { def applyMerge(item:((String, Publication), (String, Publication))) : Publication =
{
val crossrefPub = item._1._2 val crossrefPub = item._1._2
val unpayWallPub = item._1._2 if (item._2!= null) {
if(unpayWallPub!= null) { val otherPub = item._2._2
crossrefPub.mergeFrom(unpayWallPub) if (otherPub != null) {
crossrefPub.mergeFrom(otherPub)
}
} }
crossrefPub crossrefPub
}).write.save(s"$workingDirPath/firstJoin") }
crossrefPublication.joinWith(uwPublication, crossrefPublication("_1").equalTo(uwPublication("_1")), "left").map(applyMerge).write.mode(SaveMode.Overwrite).save(s"$workingDirPath/firstJoin")
logger.info("Phase 3) Join Result with ORCID")
val fj: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/firstJoin").as[Publication].map(p => (p.getId, p))
val orcidPublication: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/orcidPublication").as[Publication].map(p => (p.getId, p))
fj.joinWith(orcidPublication, fj("_1").equalTo(orcidPublication("_1")), "left").map(applyMerge).write.mode(SaveMode.Overwrite).save(s"$workingDirPath/secondJoin")
logger.info("Phase 3) Join Result with MAG")
val sj: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/secondJoin").as[Publication].map(p => (p.getId, p))
sj.where(sj("_1").like())
val magPublication: Dataset[(String, Publication)] = spark.read.load(s"$workingDirPath/magPublication").as[Publication].map(p => (p.getId, p))
sj.joinWith(magPublication, sj("_1").equalTo(magPublication("_1")), "left").map(applyMerge).write.mode(SaveMode.Overwrite).save(s"$workingDirPath/doiBoostPublication")
} }

2
dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
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@ -40,7 +40,7 @@
<start to="ResetWorkingPath"/> <start to="CreateDOIBoost"/>
<kill name="Kill"> <kill name="Kill">