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Merge remote-tracking branch 'antonis.lempesis/beta' into beta2master_sept_2022

This commit is contained in:
Claudio Atzori 2022-09-22 14:12:19 +02:00
parent 7225fe9cbe dcd85f8cd7
commit 10ec074f79
3 changed files with 83 additions and 28 deletions
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41
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
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@ -76,11 +76,11 @@ compute stats indi_result_with_orcid;
---- Sprint 3 ----
create table indi_funded_result_with_fundref stored as parquet as
select distinct r.id, coalesce(fundref, 0) as fundref
select distinct r.result as id, coalesce(fundref, 0) as fundref
from project_results r
left outer join (select distinct id, 1 as fundref from project_results
left outer join (select distinct result, 1 as fundref from project_results
where provenance='Harvested') tmp
on r.id= tmp.id;
on r.result= tmp.result;
compute stats indi_funded_result_with_fundref;
@ -92,6 +92,17 @@ compute stats indi_funded_result_with_fundref;
--
-- compute stats indi_result_org_collab;
--
create table indi_result_org_collab stored as parquet as
with tmp as (
select distinct ro.organization organization, ro.id from result_organization ro
join organization o on o.id=ro.organization where o.name is not null)
select o1.organization org1, o2.organization org2, count(o1.id) as collaborations
from tmp as o1
join tmp as o2 on o1.id=o2.id and o1.organization!=o2.organization
group by org1, org2;
compute stats indi_result_org_collab;
-- create table indi_result_org_country_collab stored as parquet as
-- with tmp as
-- (select o.id as id, o.country , ro.id as result,r.type from organization o
@ -105,6 +116,17 @@ compute stats indi_funded_result_with_fundref;
--
-- compute stats indi_result_org_country_collab;
--
create table indi_result_org_country_collab stored as parquet as
with tmp as
(select distinct ro.organization organization, ro.id, o.country from result_organization ro
join organization o on o.id=ro.organization where country <> 'UNKNOWN' and o.name is not null)
select o1.organization org1,o2.country country2, count(o1.id) as collaborations
from tmp as o1 join tmp as o2 on o1.id=o2.id
where o1.id=o2.id and o1.country!=o2.country
group by o1.organization, o1.id, o2.country;
compute stats indi_result_org_country_collab;
-- create table indi_result_org_collab stored as parquet as
-- with tmp as
-- (select o.id, ro.id as result,r.type from organization o
@ -166,6 +188,19 @@ compute stats indi_funder_country_collab;
--
-- compute stats indi_result_country_collab;
create table indi_result_country_collab stored as parquet as
with tmp as
(select distinct country, ro.id as result from organization o
join result_organization ro on o.id=ro.organization
where country <> 'UNKNOWN' and o.name is not null)
select o1.country country1, o2.country country2, count(o1.result) as collaborations
from tmp as o1
join tmp as o2 on o1.result=o2.result
where o1.country<>o2.country
group by o1.country, o2.country;
compute stats indi_result_country_collab;
---- Sprint 4 ----
create table indi_pub_diamond stored as parquet as
select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal

6
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
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@ -3,20 +3,20 @@
----------------------------------------------------
-- Peer reviewed:
create table ${stats_db_name}.result_peerreviewed STORED AS PARQUET as
create table IF NOT EXISTS ${stats_db_name}.result_peerreviewed STORED AS PARQUET as
select r.id as id, case when doi.doi_from_crossref=1 and grey.grey_lit=0 then true else false end as peer_reviewed
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_doi_from_crossref doi on doi.id=r.id
left outer join ${stats_db_name}.indi_pub_grey_lit grey on grey.id=r.id;
-- Green OA:
create table ${stats_db_name}.result_greenoa STORED AS PARQUET as
create table IF NOT EXISTS ${stats_db_name}.result_greenoa STORED AS PARQUET as
select r.id, case when green.green_oa=1 then true else false end as green
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_green_oa green on green.id=r.id;
-- GOLD OA:
create table ${stats_db_name}.result_gold STORED AS PARQUET as
create table IF NOT EXISTS ${stats_db_name}.result_gold STORED AS PARQUET as
select r.id, case when gold.is_gold=1 then true else false end as gold
from ${stats_db_name}.result r
left outer join ${stats_db_name}.indi_pub_gold_oa gold on gold.id=r.id;

64
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
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@ -23,7 +23,7 @@ create table TARGET.result stored as parquet as
'openorgs____::d2a09b9d5eabb10c95f9470e172d05d2', --??? Not exists ??
'openorgs____::d169c7407dd417152596908d48c11460', --Masaryk University
'openorgs____::1ec924b1759bb16d0a02f2dad8689b21', --University of Belgrade
'openorgs____::2fb1e47b4612688d9de9169d579939a7', --University of Helsinki
'openorgs____::0ae431b820e4c33db8967fbb2b919150', --University of Helsinki
'openorgs____::759d59f05d77188faee99b7493b46805', --University of Minho
'openorgs____::cad284878801b9465fa51a95b1d779db', --Universidad Politécnica de Madrid
'openorgs____::eadc8da90a546e98c03f896661a2e4d4', --University of Göttingen
@ -45,7 +45,11 @@ create table TARGET.result stored as parquet as
'openorgs____::15e7921fc50d9aa1229a82a84429419e', -- University Of Thessaly
'openorgs____::11f7919dadc8f8a7251af54bba60c956', -- Technical University of Crete
'openorgs____::84f0c5f5dbb6daf42748485924efde4b', -- University of Piraeus
'openorgs____::4ac562f0376fce3539504567649cb373' -- University of Patras
'openorgs____::4ac562f0376fce3539504567649cb373', -- University of Patras
'openorgs____::3e8d1f8c3f6cd7f418b09f1f58b4873b', -- Aristotle University of Thessaloniki
'openorgs____::3fcef6e1c469c10f2a84b281372c9814', -- World Bank
'openorgs____::1698a2eb1885ef8adb5a4a969e745ad3', -- École des Ponts ParisTech
'openorgs____::e15adb13c4dadd49de4d35c39b5da93a' -- Nanyang Technological University
) )) foo;
compute stats TARGET.result;
@ -151,50 +155,44 @@ create table TARGET.project_results stored as parquet as select id as result, pr
compute stats TARGET.project_results;
-- indicators
-- Sprint 1 ----
create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_green_oa;
create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_grey_lit;
create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_doi_from_crossref;
create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_gold_oa;
create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_datasets_gold_oa;
create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_software_gold_oa;
create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_has_abstract;
-- Sprint 2 ----
create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_has_cc_licence;
create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_has_cc_licence_url;
create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab;
create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country;
create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_has_abstract;
create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_with_orcid;
---- Sprint 3 ----
create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_funded_result_with_fundref;
create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country;
create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab;
create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
---- Sprint 4 ----
create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_diamond;
create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_hybrid;
create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_in_transformative;
create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_closed_other_open;
---- Sprint 5 ----
create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_no_of_copies;
create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
---- Sprint 6 ----
create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_hybrid_oa_with_cc;
create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads;
create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
@ -203,6 +201,28 @@ create table TARGET.indi_pub_downloads_year stored as parquet as select * from S
compute stats TARGET.indi_pub_downloads_year;
create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads_datasource_year;
---- Sprint 7 ----
create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_gold_oa;
create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_hybrid;
create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub;
create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year;
create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year;
create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
--create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
--compute stats TARGET.indi_datasets_gold_oa;
--create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
--compute stats TARGET.indi_software_gold_oa;
--denorm
alter table TARGET.result rename to TARGET.res_tmp;