extended dedup testing

This commit is contained in:
Claudio Atzori 2022-11-17 16:13:43 +01:00
parent 3dbc637d3e
commit 0aa725083f
6 changed files with 400 additions and 136 deletions

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@ -112,7 +112,7 @@ public class DedupRecordFactory {
// set authors and date
if (ModelSupport.isSubClass(entity, Result.class)) {
((Result) entity).setDateofacceptance(DatePicker.pick(dates));
// ((Result) entity).setDateofacceptance(DatePicker.pick(dates));
((Result) entity).setAuthor(AuthorMerger.merge(authors));
}

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@ -11,16 +11,17 @@ import java.io.File;
import java.io.IOException;
import java.io.Serializable;
import java.net.URISyntaxException;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.commons.cli.ParseException;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.FilterFunction;
import org.apache.spark.api.java.function.FlatMapFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
@ -31,7 +32,6 @@ import org.mockito.Mock;
import org.mockito.Mockito;
import org.mockito.junit.jupiter.MockitoExtension;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Sets;
@ -44,48 +44,52 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@ExtendWith(MockitoExtension.class)
@TestMethodOrder(MethodOrderer.OrderAnnotation.class)
public class SparkDedupPublicationTest implements Serializable {
public class SparkPublicationRootsTest implements Serializable {
@Mock(serializable = true)
ISLookUpService isLookUpService;
private static SparkSession spark;
private static JavaSparkContext jsc;
private static String workingPath;
private static String testGraphBasePath;
private static String testOutputBasePath;
private static String testDedupGraphBasePath;
private static String graphInputPath;
private static String graphOutputPath;
private static final String testActionSetId = "test-orchestrator";
private static Path testBaseTmpPath;
private static final ObjectMapper MAPPER = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
@BeforeAll
public static void cleanUp() throws IOException, URISyntaxException {
public static void init() throws IOException, URISyntaxException {
testGraphBasePath = Paths
.get(SparkDedupPublicationTest.class.getResource("/eu/dnetlib/dhp/dedup/entities2").toURI())
.toFile()
.getAbsolutePath();
testOutputBasePath = createTempDirectory(SparkDedupPublicationTest.class.getSimpleName() + "-")
.toAbsolutePath()
.toString();
testBaseTmpPath = createTempDirectory(SparkPublicationRootsTest.class.getSimpleName() + "-");
testDedupGraphBasePath = createTempDirectory(SparkDedupPublicationTest.class.getSimpleName() + "-")
.toAbsolutePath()
.toString();
final File entitiesSources = Paths
.get(SparkPublicationRootsTest.class.getResource("/eu/dnetlib/dhp/dedup/root").toURI())
.toFile();
FileUtils.deleteDirectory(new File(testOutputBasePath));
FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
FileUtils
.copyDirectory(
entitiesSources,
testBaseTmpPath.resolve("input").toFile());
workingPath = testBaseTmpPath.resolve("workingPath").toString();
graphInputPath = testBaseTmpPath.resolve("input").resolve("entities").toString();
graphOutputPath = testBaseTmpPath.resolve("output").toString();
FileUtils.deleteDirectory(new File(workingPath));
FileUtils.deleteDirectory(new File(graphOutputPath));
final SparkConf conf = new SparkConf();
conf.set("spark.sql.shuffle.partitions", "10");
spark = SparkSession
.builder()
.appName(SparkDedupPublicationTest.class.getSimpleName())
.appName(SparkPublicationRootsTest.class.getSimpleName())
.master("local[*]")
.config(conf)
.getOrCreate();
jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
}
@BeforeEach
@ -100,55 +104,51 @@ public class SparkDedupPublicationTest implements Serializable {
.thenReturn(classPathResourceAsString("/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json"));
}
@AfterAll
public static void tearDown() throws IOException {
FileUtils.deleteDirectory(testBaseTmpPath.toFile());
spark.close();
}
@Test
@Order(1)
void createSimRelsTest() throws Exception {
ArgumentApplicationParser parser = new ArgumentApplicationParser(
classPathResourceAsString("/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json"));
parser
.parseArgument(
new String[] {
"--graphBasePath", testGraphBasePath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", testOutputBasePath,
"--numPartitions", "5"
});
new SparkCreateSimRels(parser, spark).run(isLookUpService);
new SparkCreateSimRels(args(
"/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath,
"--numPartitions", "5"
}), spark)
.run(isLookUpService);
long pubs_simrel = spark
.read()
.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "publication"))
.load(DedupUtility.createSimRelPath(workingPath, testActionSetId, "publication"))
.count();
assertEquals(62, pubs_simrel);
assertEquals(74, pubs_simrel);
}
@Test
@Order(2)
void cutMergeRelsTest() throws Exception {
ArgumentApplicationParser parser = new ArgumentApplicationParser(
classPathResourceAsString("/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json"));
parser
.parseArgument(
new String[] {
"--graphBasePath", testGraphBasePath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", testOutputBasePath,
"--cutConnectedComponent", "3"
});
new SparkCreateMergeRels(parser, spark).run(isLookUpService);
new SparkCreateMergeRels(args(
"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath,
"--cutConnectedComponent", "3"
}), spark)
.run(isLookUpService);
long pubs_mergerel = spark
.read()
.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
.load(workingPath + "/" + testActionSetId + "/publication_mergerel")
.as(Encoders.bean(Relation.class))
.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
.groupBy("source")
@ -159,49 +159,44 @@ public class SparkDedupPublicationTest implements Serializable {
assertEquals(0, pubs_mergerel);
FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel"));
FileUtils.deleteDirectory(new File(workingPath + "/" + testActionSetId + "/publication_mergerel"));
}
@Test
@Order(3)
void createMergeRelsTest() throws Exception {
new SparkCreateMergeRels(args(
"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath
}), spark)
.run(isLookUpService);
ArgumentApplicationParser parser = new ArgumentApplicationParser(
classPathResourceAsString("/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json"));
parser
.parseArgument(
new String[] {
"--graphBasePath", testGraphBasePath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", testOutputBasePath
});
new SparkCreateMergeRels(parser, spark).run(isLookUpService);
final Dataset<Relation> pubs = spark
final Dataset<Relation> merges = spark
.read()
.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
.load(workingPath + "/" + testActionSetId + "/publication_mergerel")
.as(Encoders.bean(Relation.class));
final List<Relation> merges = pubs
final List<Relation> mergeList = merges
.filter("source == '50|doi_dedup___::d5021b53204e4fdeab6ff5d5bc468032'")
.collectAsList();
assertEquals(3, merges.size());
assertEquals(3, mergeList.size());
Set<String> dups = Sets
.newHashSet(
"50|doi_________::3b1d0d8e8f930826665df9d6b82fbb73",
"50|doi_________::d5021b53204e4fdeab6ff5d5bc468032",
"50|arXiv_______::c93aeb433eb90ed7a86e29be00791b7c");
merges.forEach(r -> {
mergeList.forEach(r -> {
assertEquals(ModelConstants.RESULT_RESULT, r.getRelType());
assertEquals(ModelConstants.DEDUP, r.getSubRelType());
assertEquals(ModelConstants.MERGES, r.getRelClass());
assertTrue(dups.contains(r.getTarget()));
});
final List<Relation> mergedIn = pubs
final List<Relation> mergedIn = merges
.filter("target == '50|doi_dedup___::d5021b53204e4fdeab6ff5d5bc468032'")
.collectAsList();
assertEquals(3, mergedIn.size());
@ -212,47 +207,37 @@ public class SparkDedupPublicationTest implements Serializable {
assertTrue(dups.contains(r.getSource()));
});
assertEquals(24, pubs.count());
assertEquals(32, merges.count());
}
@Test
@Order(4)
void createDedupRecordTest() throws Exception {
ArgumentApplicationParser parser = new ArgumentApplicationParser(
classPathResourceAsString("/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json"));
parser
.parseArgument(
new String[] {
"--graphBasePath", testGraphBasePath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", testOutputBasePath
});
new SparkCreateDedupRecord(parser, spark).run(isLookUpService);
final ObjectMapper mapper = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
new SparkCreateDedupRecord(args(
"/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath
}), spark)
.run(isLookUpService);
final Dataset<Publication> roots = spark
.read()
.textFile(testOutputBasePath + "/" + testActionSetId + "/publication_deduprecord")
.map(
(MapFunction<String, Publication>) value -> mapper.readValue(value, Publication.class),
Encoders.bean(Publication.class));
.textFile(workingPath + "/" + testActionSetId + "/publication_deduprecord")
.map(asEntity(Publication.class), Encoders.bean(Publication.class));
assertEquals(2, roots.count());
assertEquals(3, roots.count());
final Dataset<Publication> pubs = spark
.read()
.textFile(DedupUtility.createEntityPath(testGraphBasePath, "publication"))
.map(
(MapFunction<String, Publication>) value -> mapper.readValue(value, Publication.class),
Encoders.bean(Publication.class));
.textFile(DedupUtility.createEntityPath(graphInputPath, "publication"))
.map(asEntity(Publication.class), Encoders.bean(Publication.class));
verifyRoot_case_1(roots, pubs);
verifyRoot_case_2(roots, pubs);
verifyRoot_case_3(roots, pubs);
}
private static void verifyRoot_case_1(Dataset<Publication> roots, Dataset<Publication> pubs) {
@ -299,8 +284,7 @@ public class SparkDedupPublicationTest implements Serializable {
assertEquals("Article", instance_cr.get().getInstancetype().getClassname());
}
private void verifyRoot_case_2(Dataset<Publication> roots, Dataset<Publication> pubs)
throws JsonProcessingException {
private void verifyRoot_case_2(Dataset<Publication> roots, Dataset<Publication> pubs) {
Publication root = roots
.filter("id = '50|doi_dedup___::18aff3b55fb6876466a5d4bd82434885'")
.first();
@ -334,57 +318,86 @@ public class SparkDedupPublicationTest implements Serializable {
assertTrue(Sets.difference(root_cf, dups_cf).isEmpty());
}
private void verifyRoot_case_3(Dataset<Publication> roots, Dataset<Publication> pubs) {
Publication root = roots
.filter("id = '50|dedup_wf_001::31ca734cc22181b704c4aa8fd050062a'")
.first();
assertNotNull(root);
Publication pivot_duplicate = pubs
.filter("id = '50|od_______166::31ca734cc22181b704c4aa8fd050062a'")
.first();
assertEquals(pivot_duplicate.getPublisher().getValue(), root.getPublisher().getValue());
Set<String> dups_cf = pubs
.collectAsList()
.stream()
.flatMap(p -> p.getCollectedfrom().stream())
.map(KeyValue::getValue)
.collect(Collectors.toCollection(HashSet::new));
Set<String> root_cf = root
.getCollectedfrom()
.stream()
.map(KeyValue::getValue)
.collect(Collectors.toCollection(HashSet::new));
assertTrue(Sets.difference(root_cf, dups_cf).isEmpty());
}
@Test
@Order(6)
void updateEntityTest() throws Exception {
new SparkUpdateEntity(args(
"/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--workingPath", workingPath,
"--dedupGraphPath", graphOutputPath
}), spark)
.run(isLookUpService);
ArgumentApplicationParser parser = new ArgumentApplicationParser(
classPathResourceAsString("/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json"));
parser
.parseArgument(
new String[] {
"-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath
});
new SparkUpdateEntity(parser, spark).run(isLookUpService);
long publications = jsc.textFile(testDedupGraphBasePath + "/publication").count();
long publications = spark.read().textFile(graphOutputPath + "/publication").count();
long mergedPubs = spark
.read()
.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
.load(workingPath + "/" + testActionSetId + "/publication_mergerel")
.as(Encoders.bean(Relation.class))
.where("relClass=='merges'")
.javaRDD()
.map(Relation::getTarget)
.map((MapFunction<Relation, String>) Relation::getTarget, Encoders.STRING())
.distinct()
.count();
assertEquals(14, publications);
assertEquals(19, publications); // 16 originals + 3 roots
long deletedPubs = jsc
.textFile(testDedupGraphBasePath + "/publication")
.filter(this::isDeletedByInference)
long deletedPubs = spark
.read()
.textFile(graphOutputPath + "/publication")
.map(asEntity(Publication.class), Encoders.bean(Publication.class))
.filter("datainfo.deletedbyinference == true")
.map((MapFunction<Publication, String>) OafEntity::getId, Encoders.STRING())
.distinct()
.count();
assertEquals(mergedPubs, deletedPubs);
}
@AfterAll
public static void finalCleanUp() throws IOException {
FileUtils.deleteDirectory(new File(testOutputBasePath));
FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
}
public boolean isDeletedByInference(String s) {
return s.contains("\"deletedbyinference\":true");
}
private static String classPathResourceAsString(String path) throws IOException {
return IOUtils
.toString(
SparkDedupPublicationTest.class
SparkPublicationRootsTest.class
.getResourceAsStream(path));
}
private static <T extends OafEntity> MapFunction<String, T> asEntity(Class<T> clazz) {
return value -> MAPPER.readValue(value, clazz);
}
private ArgumentApplicationParser args(String paramSpecs, String[] args) throws IOException, ParseException {
ArgumentApplicationParser parser = new ArgumentApplicationParser(classPathResourceAsString(paramSpecs));
parser.parseArgument(args);
return parser;
}
}

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@ -0,0 +1,251 @@
package eu.dnetlib.dhp.oa.dedup;
import static java.nio.file.Files.createTempDirectory;
import static org.apache.spark.sql.functions.count;
import static org.junit.jupiter.api.Assertions.*;
import static org.mockito.Mockito.lenient;
import java.io.File;
import java.io.IOException;
import java.io.Serializable;
import java.net.URISyntaxException;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.HashSet;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.cli.ParseException;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.FilterFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.*;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.Mockito;
import org.mockito.junit.jupiter.MockitoExtension;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Sets;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@ExtendWith(MockitoExtension.class)
@TestMethodOrder(MethodOrderer.OrderAnnotation.class)
public class SparkPublicationRootsTest2 implements Serializable {
@Mock(serializable = true)
ISLookUpService isLookUpService;
private static SparkSession spark;
private static String workingPath;
private static String graphInputPath;
private static String graphOutputPath;
private static final String testActionSetId = "test-orchestrator";
private static Path testBaseTmpPath;
private static final ObjectMapper MAPPER = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
@BeforeAll
public static void init() throws IOException, URISyntaxException {
testBaseTmpPath = createTempDirectory(SparkPublicationRootsTest2.class.getSimpleName() + "-");
final File entitiesSources = Paths
.get(SparkPublicationRootsTest2.class.getResource("/eu/dnetlib/dhp/dedup/root").toURI())
.toFile();
FileUtils
.copyDirectory(
entitiesSources,
testBaseTmpPath.resolve("input").toFile());
FileUtils
.copyFileToDirectory(
Paths
.get(
SparkPublicationRootsTest2.class
.getResource(
"/eu/dnetlib/dhp/dedup/root/alterations/publication/publication_1.gz")
.toURI())
.toFile(),
testBaseTmpPath.resolve("input").resolve("entities").resolve("publication").toFile());
workingPath = testBaseTmpPath.resolve("workingPath").toString();
graphInputPath = testBaseTmpPath.resolve("input").resolve("entities").toString();
graphOutputPath = testBaseTmpPath.resolve("output").toString();
final SparkConf conf = new SparkConf();
conf.set("spark.sql.shuffle.partitions", "10");
spark = SparkSession
.builder()
.appName(SparkPublicationRootsTest2.class.getSimpleName())
.master("local[*]")
.config(conf)
.getOrCreate();
}
@BeforeEach
public void setUp() throws IOException, ISLookUpException {
lenient()
.when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId)))
.thenReturn(classPathResourceAsString("/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator_publication.xml"));
lenient()
.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication")))
.thenReturn(classPathResourceAsString("/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json"));
}
@AfterAll
public static void tearDown() throws IOException {
FileUtils.deleteDirectory(testBaseTmpPath.toFile());
}
@Test
@Order(7)
void dedupAlteredDatasetTest() throws Exception {
new SparkCreateSimRels(args(
"/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath,
"--numPartitions", "5"
}), spark)
.run(isLookUpService);
new SparkCreateMergeRels(args(
"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath
}), spark)
.run(isLookUpService);
final Dataset<Relation> merges = spark
.read()
.load(workingPath + "/" + testActionSetId + "/publication_mergerel")
.as(Encoders.bean(Relation.class));
assertEquals(
3, merges
.filter("relclass == 'isMergedIn'")
.map((MapFunction<Relation, String>) Relation::getTarget, Encoders.STRING())
.distinct()
.count());
assertEquals(
4, merges
.filter("source == '50|doi_dedup___::b3aec7985136e36827176aaa1dd5082d'")
.count());
new SparkCreateDedupRecord(args(
"/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json",
new String[] {
"--graphBasePath", graphInputPath,
"--actionSetId", testActionSetId,
"--isLookUpUrl", "lookupurl",
"--workingPath", workingPath
}), spark)
.run(isLookUpService);
final Dataset<Publication> roots = spark
.read()
.textFile(workingPath + "/" + testActionSetId + "/publication_deduprecord")
.map(asEntity(Publication.class), Encoders.bean(Publication.class));
assertEquals(3, roots.count());
final Dataset<Publication> pubs = spark
.read()
.textFile(DedupUtility.createEntityPath(graphInputPath, "publication"))
.map(asEntity(Publication.class), Encoders.bean(Publication.class));
Publication root = roots
.filter("id = '50|doi_dedup___::b3aec7985136e36827176aaa1dd5082d'")
.first();
assertNotNull(root);
Publication crossref_duplicate = pubs
.filter("id = '50|doi_________::b3aec7985136e36827176aaa1dd5082d'")
.collectAsList()
.get(0);
assertEquals(crossref_duplicate.getDateofacceptance().getValue(), root.getDateofacceptance().getValue());
assertEquals(crossref_duplicate.getJournal().getName(), root.getJournal().getName());
assertEquals(crossref_duplicate.getJournal().getIssnPrinted(), root.getJournal().getIssnPrinted());
assertEquals(crossref_duplicate.getPublisher().getValue(), root.getPublisher().getValue());
Set<String> rootPids = root
.getPid()
.stream()
.map(StructuredProperty::getValue)
.collect(Collectors.toCollection(HashSet::new));
Set<String> dupPids = crossref_duplicate
.getPid()
.stream()
.map(StructuredProperty::getValue)
.collect(Collectors.toCollection(HashSet::new));
assertFalse(Sets.intersection(rootPids, dupPids).isEmpty());
assertTrue(rootPids.contains("10.1109/jstqe.2022.3205716"));
assertTrue(rootPids.contains("10.1109/jstqe.2023.9999999"));
Optional<Instance> instance_cr = root
.getInstance()
.stream()
.filter(i -> i.getCollectedfrom().getValue().equals("Crossref"))
.findFirst();
assertTrue(instance_cr.isPresent());
assertEquals("OPEN", instance_cr.get().getAccessright().getClassid());
assertEquals("Open Access", instance_cr.get().getAccessright().getClassname());
assertEquals(OpenAccessRoute.hybrid, instance_cr.get().getAccessright().getOpenAccessRoute());
assertEquals(
"IEEE Journal of Selected Topics in Quantum Electronics", instance_cr.get().getHostedby().getValue());
assertEquals("0001", instance_cr.get().getInstancetype().getClassid());
assertEquals("Article", instance_cr.get().getInstancetype().getClassname());
}
private static String classPathResourceAsString(String path) throws IOException {
return IOUtils
.toString(
SparkPublicationRootsTest2.class
.getResourceAsStream(path));
}
private static <T extends OafEntity> MapFunction<String, T> asEntity(Class<T> clazz) {
return value -> MAPPER.readValue(value, clazz);
}
private ArgumentApplicationParser args(String paramSpecs, String[] args) throws IOException, ParseException {
ArgumentApplicationParser parser = new ArgumentApplicationParser(classPathResourceAsString(paramSpecs));
parser.parseArgument(args);
return parser;
}
}