fix wrong relation with source null
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@ -38,37 +38,39 @@ object SparkGenerateDOIBoostActionSet {
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val crossRefRelation = parser.get("crossRefRelation")
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val dbaffiliationRelationPath = parser.get("dbaffiliationRelationPath")
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val dbOrganizationPath = parser.get("dbOrganizationPath")
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val workingDirPath = parser.get("targetPath")
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val sequenceFilePath = parser.get("sFilePath")
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val asDataset = spark.read.load(dbDatasetPath).as[OafDataset]
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.filter(p => p != null || p.getId != null)
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.map(d =>DoiBoostMappingUtil.fixResult(d))
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.map(d=>DoiBoostMappingUtil.toActionSet(d))(Encoders.tuple(Encoders.STRING, Encoders.STRING))
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// .write.mode(SaveMode.Overwrite).save(s"$workingDirPath/actionSet")
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val asPublication =spark.read.load(dbPublicationPath).as[Publication]
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.filter(p => p != null || p.getId != null)
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.map(d=>DoiBoostMappingUtil.toActionSet(d))(Encoders.tuple(Encoders.STRING, Encoders.STRING))
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// .write.mode(SaveMode.Append).save(s"$workingDirPath/actionSet")
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val asOrganization = spark.read.load(dbOrganizationPath).as[Organization]
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.map(d=>DoiBoostMappingUtil.toActionSet(d))(Encoders.tuple(Encoders.STRING, Encoders.STRING))
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// .write.mode(SaveMode.Append).save(s"$workingDirPath/actionSet")
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val asCRelation = spark.read.load(crossRefRelation).as[Relation]
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.filter(r => r!= null || (r.getSource != null && r.getTarget != null))
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.map(d=>DoiBoostMappingUtil.toActionSet(d))(Encoders.tuple(Encoders.STRING, Encoders.STRING))
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// .write.mode(SaveMode.Append).save(s"$workingDirPath/actionSet")
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val asRelAffiliation = spark.read.load(dbaffiliationRelationPath).as[Relation]
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.map(d=>DoiBoostMappingUtil.toActionSet(d))(Encoders.tuple(Encoders.STRING, Encoders.STRING))
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// .write.mode(SaveMode.Append).save(s"$workingDirPath/actionSet")
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val d: Dataset[(String, String)] = asDataset.union(asPublication).union(asOrganization).union(asCRelation).union(asRelAffiliation)
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// spark.read.load(s"$workingDirPath/actionSet").as[(String,String)]
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d.rdd.repartition(6000).map(s => (new Text(s._1), new Text(s._2))).saveAsHadoopFile(s"$sequenceFilePath", classOf[Text], classOf[Text], classOf[SequenceFileOutputFormat[Text,Text]], classOf[GzipCodec])
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@ -15,7 +15,7 @@ import scala.collection.JavaConverters._
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import scala.collection.mutable
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import scala.util.matching.Regex
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import eu.dnetlib.dhp.schema.scholexplorer.OafUtils;
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import eu.dnetlib.dhp.schema.scholexplorer.OafUtils
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case class CrossrefDT(doi: String, json:String, timestamp: Long) {}
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@ -182,7 +182,7 @@ case object Crossref2Oaf {
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// Ticket #6281 added pid to Instance
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instance.setPid(result.getPid)
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val has_review = (json \ "relation" \"has-review" \ "id")
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val has_review = json \ "relation" \"has-review" \ "id"
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if(has_review != JNothing) {
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instance.setRefereed(
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@ -208,8 +208,9 @@ case object Crossref2Oaf {
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instance.setUrl(links.asJava)
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result.setId(IdentifierFactory.createDOIBoostIdentifier(result))
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if (result.getId== null)
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return null
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result
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null
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else
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result
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}
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@ -241,9 +242,9 @@ case object Crossref2Oaf {
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val result = generateItemFromType(objectType, objectSubType)
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if (result == null)
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return List()
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val cOBJCategory = mappingCrossrefSubType.getOrElse(objectType, mappingCrossrefSubType.getOrElse(objectSubType, "0038 Other literature type"));
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val cOBJCategory = mappingCrossrefSubType.getOrElse(objectType, mappingCrossrefSubType.getOrElse(objectSubType, "0038 Other literature type"))
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mappingResult(result, json, cOBJCategory)
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if (result == null)
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if (result == null || result.getId == null)
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return List()
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