initial implementation of the promote wf
This commit is contained in:
parent
815d6b25d9
commit
0948536614
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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<parent>
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<artifactId>dhp-workflows</artifactId>
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<groupId>eu.dnetlib.dhp</groupId>
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<version>1.2.4-SNAPSHOT</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<artifactId>dhp-stats-promote</artifactId>
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<dependencies>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-core_2.11</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-sql_2.11</artifactId>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>pl.project13.maven</groupId>
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<artifactId>git-commit-id-plugin</artifactId>
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<version>2.1.11</version>
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<configuration>
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<failOnNoGitDirectory>false</failOnNoGitDirectory>
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</configuration>
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</plugin>
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</plugins>
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</build>
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</project>
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<configuration>
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<property>
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<name>jobTracker</name>
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<value>${jobTracker}</value>
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</property>
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<property>
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<name>nameNode</name>
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<value>${nameNode}</value>
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</property>
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<property>
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<name>oozie.use.system.libpath</name>
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<value>true</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>spark2</value>
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</property>
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<property>
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<name>hive_metastore_uris</name>
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<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
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</property>
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<property>
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<name>hive_jdbc_url</name>
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<value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
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</property>
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<property>
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<name>oozie.wf.workflow.notification.url</name>
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<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
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</property>
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<property>
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<name>stats_tool_api_url</name>
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<value>${stats_tool_api_url}</value>
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</property>
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</configuration>
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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echo "Getting file from " $3
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hdfs dfs -copyToLocal $3
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echo "Running impala shell make the new database visible"
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impala-shell -q "INVALIDATE METADATA;"
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echo "Running impala shell to compute new table stats"
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impala-shell -d $1 -f $2
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echo "Impala shell finished"
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rm $2
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#!/usr/bin/env bash
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curl --request GET $1/cache/promoteCache
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--------------------------------------------------------------
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--------------------------------------------------------------
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-- Stats database creation
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--------------------------------------------------------------
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--------------------------------------------------------------
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DROP database IF EXISTS ${stats_db_name} CASCADE;
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CREATE database ${stats_db_name};
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
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CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
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CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
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CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
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CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
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CREATE OR REPLACE VIEW ${stats_db_name}.context AS SELECT * FROM ${external_stats_db_name}.context;
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CREATE OR REPLACE VIEW ${stats_db_name}.category AS SELECT * FROM ${external_stats_db_name}.category;
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CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_stats_db_name}.concept;
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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-- Creation date of the database
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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create table ${stats_db_name}.creation_date as select date_format(current_date(), 'dd-MM-yyyy') as date;
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----------------------------------------------------------------
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----------------------------------------------------------------
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-- Post processing - Updates on main tables
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----------------------------------------------------------------
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----------------------------------------------------------------
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--Datasource temporary table updates
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UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
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-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
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UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
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DROP TABLE IF EXISTS ${stats_db_name}.project;
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CREATE TABLE ${stats_db_name}.project stored as parquet as
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SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
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CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
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CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
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p.callidentifier, p.code
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FROM ${stats_db_name}.project_tmp p
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LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
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FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
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WHERE r.type='publication'
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GROUP BY pr.id) AS prr1 on prr1.id = p.id
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LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
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FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
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WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
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GROUP BY pp.id) AS prr2
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ON prr2.id = p.id;
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-- Publication temporary table updates
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UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Dataset temporary table updates
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UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Software temporary table updates
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UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Oherresearchproduct temporary table updates
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UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;
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------------------------------------------------------------------------------------------------------
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-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
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------------------------------------------------------------------------------------------------------
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DROP TABLE IF EXISTS ${stats_db_name}.datasource;
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CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.publication;
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CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.dataset;
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CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.software;
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CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
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CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
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DROP TABLE ${stats_db_name}.project_tmp;
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DROP TABLE ${stats_db_name}.datasource_tmp;
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DROP TABLE ${stats_db_name}.publication_tmp;
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DROP TABLE ${stats_db_name}.dataset_tmp;
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DROP TABLE ${stats_db_name}.software_tmp;
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DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
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----------------------------------------------
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-- Re-creating views from final parquet tables
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---------------------------------------------
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-- Result
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CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
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-------------------------------------------------------------------------------
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-- To see with Antonis if the following is needed and where it should be placed
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-------------------------------------------------------------------------------
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CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;
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------------------------------------------------------
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------------------------------------------------------
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-- Additional relations
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--
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-- Sources related tables/views
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------------------------------------------------------
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------------------------------------------------------
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_sources as
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SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
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FROM (
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SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
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from ${openaire_db_name}.publication p lateral view explode(p.collectedfrom.key) c as datasource) p
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LEFT OUTER JOIN
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(
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SELECT substr(d.id, 4) id
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from ${openaire_db_name}.datasource d
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WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_sources as
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SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
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FROM (
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SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
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from ${openaire_db_name}.dataset p lateral view explode(p.collectedfrom.key) c as datasource) p
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LEFT OUTER JOIN
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(
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SELECT substr(d.id, 4) id
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from ${openaire_db_name}.datasource d
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WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_sources as
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SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
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FROM (
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SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
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from ${openaire_db_name}.software p lateral view explode(p.collectedfrom.key) c as datasource) p
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LEFT OUTER JOIN
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(
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SELECT substr(d.id, 4) id
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from ${openaire_db_name}.datasource d
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WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_sources as
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SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
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FROM (
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SELECT substr(p.id, 4) as id, substr(datasource, 4) as datasource
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from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.collectedfrom.key) c as datasource) p
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LEFT OUTER JOIN
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(
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SELECT substr(d.id, 4) id
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from ${openaire_db_name}.datasource d
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WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
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CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_sources AS
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SELECT * FROM ${stats_db_name}.publication_sources
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UNION ALL
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SELECT * FROM ${stats_db_name}.dataset_sources
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UNION ALL
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SELECT * FROM ${stats_db_name}.software_sources
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UNION ALL
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SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
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------------------------------------------------------
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------------------------------------------------------
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-- Additional relations
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--
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-- Licences related tables/views
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------------------------------------------------------
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------------------------------------------------------
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_licenses AS
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SELECT substr(p.id, 4) as id, licenses.value as type
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from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.license) instances as licenses
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where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_licenses AS
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SELECT substr(p.id, 4) as id, licenses.value as type
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from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.license) instances as licenses
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where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_licenses AS
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SELECT substr(p.id, 4) as id, licenses.value as type
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from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.license) instances as licenses
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where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
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CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_licenses AS
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SELECT substr(p.id, 4) as id, licenses.value as type
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from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.license) instances as licenses
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where licenses.value is not null and licenses.value != '' and p.datainfo.deletedbyinference=false;
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CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_licenses AS
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SELECT * FROM ${stats_db_name}.publication_licenses
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UNION ALL
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SELECT * FROM ${stats_db_name}.dataset_licenses
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UNION ALL
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SELECT * FROM ${stats_db_name}.software_licenses
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UNION ALL
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||||||
|
SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_pids AS
|
||||||
|
select substr(o.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid
|
||||||
|
from ${openaire_db_name}.organization o lateral view explode(o.pid) pids as ppid;
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization_sources as
|
||||||
|
SELECT o.id, case when d.id is null then 'other' else o.datasource end as datasource
|
||||||
|
FROM (
|
||||||
|
SELECT substr(o.id, 4) as id, substr(instances.instance.key, 4) as datasource
|
||||||
|
from ${openaire_db_name}.organization o lateral view explode(o.collectedfrom) instances as instance) o
|
||||||
|
LEFT OUTER JOIN (
|
||||||
|
SELECT substr(d.id, 4) id
|
||||||
|
from ${openaire_db_name}.datasource d
|
||||||
|
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;
|
||||||
|
|
@ -0,0 +1,36 @@
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Additional relations
|
||||||
|
--
|
||||||
|
-- Refereed related tables/views
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.publication_refereed as
|
||||||
|
select substr(r.id, 4) as id, inst.refereed.classname as refereed
|
||||||
|
from ${openaire_db_name}.publication r lateral view explode(r.instance) instances as inst
|
||||||
|
where r.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.dataset_refereed as
|
||||||
|
select substr(r.id, 4) as id, inst.refereed.classname as refereed
|
||||||
|
from ${openaire_db_name}.dataset r lateral view explode(r.instance) instances as inst
|
||||||
|
where r.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.software_refereed as
|
||||||
|
select substr(r.id, 4) as id, inst.refereed.classname as refereed
|
||||||
|
from ${openaire_db_name}.software r lateral view explode(r.instance) instances as inst
|
||||||
|
where r.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.otherresearchproduct_refereed as
|
||||||
|
select substr(r.id, 4) as id, inst.refereed.classname as refereed
|
||||||
|
from ${openaire_db_name}.otherresearchproduct r lateral view explode(r.instance) instances as inst
|
||||||
|
where r.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_name}.result_refereed as
|
||||||
|
select * from ${stats_db_name}.publication_refereed
|
||||||
|
union all
|
||||||
|
select * from ${stats_db_name}.dataset_refereed
|
||||||
|
union all
|
||||||
|
select * from ${stats_db_name}.software_refereed
|
||||||
|
union all
|
||||||
|
select * from ${stats_db_name}.otherresearchproduct_refereed;
|
||||||
|
|
@ -0,0 +1,80 @@
|
||||||
|
----------------------------------------------------
|
||||||
|
-- Shortcuts for various definitions in stats db ---
|
||||||
|
----------------------------------------------------
|
||||||
|
|
||||||
|
-- Peer reviewed:
|
||||||
|
-- Results that have been collected from Crossref
|
||||||
|
create table ${stats_db_name}.result_peerreviewed as
|
||||||
|
with peer_reviewed as (
|
||||||
|
select distinct r.id as id
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
join ${stats_db_name}.result_sources rs on rs.id=r.id
|
||||||
|
join ${stats_db_name}.datasource d on d.id=rs.datasource
|
||||||
|
where d.name='Crossref')
|
||||||
|
select distinct peer_reviewed.id as id, true as peer_reviewed
|
||||||
|
from peer_reviewed
|
||||||
|
union all
|
||||||
|
select distinct r.id as id, false as peer_reviewed
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
left outer join peer_reviewed pr on pr.id=r.id
|
||||||
|
where pr.id is null;
|
||||||
|
|
||||||
|
-- Green OA:
|
||||||
|
-- OA results that are hosted by an Institutional repository and have NOT been harvested from a DOAJ journal.
|
||||||
|
create table ${stats_db_name}.result_greenoa as
|
||||||
|
with result_green as (
|
||||||
|
select distinct r.id as id
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
join ${stats_db_name}.result_datasources rd on rd.id=r.id
|
||||||
|
join ${stats_db_name}.datasource d on d.id=rd.datasource
|
||||||
|
left outer join (
|
||||||
|
select rd.id from ${stats_db_name}.result_datasources rd
|
||||||
|
join ${stats_db_name}.datasource d on rd.datasource=d.id
|
||||||
|
join ${stats_db_name}.datasource_sources sds on sds.id=d.id
|
||||||
|
join ${stats_db_name}.datasource sd on sd.id=sds.datasource
|
||||||
|
where sd.name='DOAJ-ARTICLES'
|
||||||
|
) as doaj on doaj.id=r.id
|
||||||
|
where r.bestlicence in ('Open Access', 'Open Source') and d.type='Institutional Repository' and doaj.id is null)
|
||||||
|
select distinct result_green.id, true as green
|
||||||
|
from result_green
|
||||||
|
union all
|
||||||
|
select distinct r.id as id, false as green
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
left outer join result_green rg on rg.id=r.id
|
||||||
|
where rg.id is null;
|
||||||
|
|
||||||
|
-- GOLD OA:
|
||||||
|
-- OA results that have been harvested from a DOAJ journal.
|
||||||
|
create table ${stats_db_name}.result_gold as
|
||||||
|
with result_gold as (
|
||||||
|
select distinct r.id as id
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
join ${stats_db_name}.result_datasources rd on rd.id=r.id
|
||||||
|
join ${stats_db_name}.datasource d on d.id=rd.datasource
|
||||||
|
join ${stats_db_name}.datasource_sources sds on sds.id=d.id
|
||||||
|
join ${stats_db_name}.datasource sd on sd.id=sds.datasource
|
||||||
|
where r.type='publication' and r.bestlicence='Open Access' and sd.name='DOAJ-Articles')
|
||||||
|
select distinct result_gold.id, true as gold
|
||||||
|
from result_gold
|
||||||
|
union all
|
||||||
|
select distinct r.id, false as gold
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
where r.id not in (select id from result_gold);
|
||||||
|
|
||||||
|
-- shortcut result-country through the organization affiliation
|
||||||
|
create table ${stats_db_name}.result_affiliated_country as
|
||||||
|
select r.id as id, o.country as country
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
join ${stats_db_name}.result_organization ro on ro.id=r.id
|
||||||
|
join ${stats_db_name}.organization o on o.id=ro.organization
|
||||||
|
where o.country is not null and o.country!='';
|
||||||
|
|
||||||
|
-- shortcut result-country through datasource of deposition
|
||||||
|
create table ${stats_db_name}.result_deposited_country as
|
||||||
|
select r.id as id, o.country as country
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
join ${stats_db_name}.result_datasources rd on rd.id=r.id
|
||||||
|
join ${stats_db_name}.datasource d on d.id=rd.datasource
|
||||||
|
join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
|
||||||
|
join ${stats_db_name}.organization o on o.id=dor.organization
|
||||||
|
where o.country is not null and o.country!='';
|
||||||
|
|
@ -0,0 +1,55 @@
|
||||||
|
-- replace the creation of the result view to include the boolean fields from the previous tables (green, gold,
|
||||||
|
-- peer reviewed)
|
||||||
|
drop table if exists ${stats_db_name}.result_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.result_tmp (
|
||||||
|
id STRING,
|
||||||
|
title STRING,
|
||||||
|
publisher STRING,
|
||||||
|
journal STRING,
|
||||||
|
`date` STRING,
|
||||||
|
`year` INT,
|
||||||
|
bestlicence STRING,
|
||||||
|
access_mode STRING,
|
||||||
|
embargo_end_date STRING,
|
||||||
|
delayed BOOLEAN,
|
||||||
|
authors INT,
|
||||||
|
source STRING,
|
||||||
|
abstract BOOLEAN,
|
||||||
|
type STRING ,
|
||||||
|
peer_reviewed BOOLEAN,
|
||||||
|
green BOOLEAN,
|
||||||
|
gold BOOLEAN)
|
||||||
|
clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
insert into ${stats_db_name}.result_tmp
|
||||||
|
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
|
||||||
|
FROM ${stats_db_name}.publication r
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
|
||||||
|
|
||||||
|
insert into ${stats_db_name}.result_tmp
|
||||||
|
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
|
||||||
|
FROM ${stats_db_name}.dataset r
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
|
||||||
|
|
||||||
|
insert into ${stats_db_name}.result_tmp
|
||||||
|
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
|
||||||
|
FROM ${stats_db_name}.software r
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
|
||||||
|
|
||||||
|
insert into ${stats_db_name}.result_tmp
|
||||||
|
select r.id, r.title, r.publisher, r.journal, r.`date`, date_format(r.`date`, 'yyyy'), r.bestlicence, r.bestlicence, r.embargo_end_date, r.delayed, r.authors, r.source, r.abstract, r.type, pr.peer_reviewed, green.green, gold.gold
|
||||||
|
FROM ${stats_db_name}.otherresearchproduct r
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_peerreviewed pr on pr.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_greenoa green on green.id=r.id
|
||||||
|
LEFT OUTER JOIN ${stats_db_name}.result_gold gold on gold.id=r.id;
|
||||||
|
|
||||||
|
drop table if exists ${stats_db_name}.result;
|
||||||
|
drop view if exists ${stats_db_name}.result;
|
||||||
|
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
|
||||||
|
drop table ${stats_db_name}.result_tmp;
|
||||||
|
|
@ -0,0 +1,32 @@
|
||||||
|
-------------------------------------------
|
||||||
|
--- Extra tables, mostly used by indicators
|
||||||
|
|
||||||
|
create table ${stats_db_name}.result_projectcount as
|
||||||
|
select r.id, count(distinct p.id) as count
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
|
||||||
|
left outer join ${stats_db_name}.project p on p.id=rp.project
|
||||||
|
group by r.id;
|
||||||
|
|
||||||
|
create table ${stats_db_name}.result_fundercount as
|
||||||
|
select r.id, count(distinct p.funder) as count
|
||||||
|
from ${stats_db_name}.result r
|
||||||
|
left outer join ${stats_db_name}.result_projects rp on rp.id=r.id
|
||||||
|
left outer join ${stats_db_name}.project p on p.id=rp.project
|
||||||
|
group by r.id;
|
||||||
|
|
||||||
|
create table ${stats_db_name}.project_resultcount as
|
||||||
|
with rcount as (
|
||||||
|
select p.id as pid, count(distinct r.id) as `count`, r.type as type
|
||||||
|
from ${stats_db_name}.project p
|
||||||
|
left outer join ${stats_db_name}.result_projects rp on rp.project=p.id
|
||||||
|
left outer join ${stats_db_name}.result r on r.id=rp.id
|
||||||
|
group by r.type, p.id )
|
||||||
|
select rcount.pid, sum(case when rcount.type='publication' then rcount.count else 0 end) as publications,
|
||||||
|
sum(case when rcount.type='dataset' then rcount.count else 0 end) as datasets,
|
||||||
|
sum(case when rcount.type='software' then rcount.count else 0 end) as software,
|
||||||
|
sum(case when rcount.type='other' then rcount.count else 0 end) as other
|
||||||
|
from rcount
|
||||||
|
group by rcount.pid;
|
||||||
|
|
||||||
|
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture
|
||||||
|
|
@ -0,0 +1,207 @@
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Shadow schema table exchange
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
|
||||||
|
-- Dropping old views
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
|
||||||
|
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
|
||||||
|
|
||||||
|
|
||||||
|
-- Creating the shadow database, in case it doesn't exist
|
||||||
|
CREATE database IF NOT EXISTS ${stats_db_shadow_name};
|
||||||
|
|
||||||
|
-- Creating new views
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
|
||||||
|
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;
|
||||||
|
|
@ -0,0 +1,8 @@
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Impala table statistics - Needed to make the tables
|
||||||
|
-- visible for impala
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
|
||||||
|
INVALIDATE METADATA ${stats_db_name};
|
||||||
|
|
@ -0,0 +1,8 @@
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Impala table statistics - Needed to make the tables
|
||||||
|
-- visible for impala
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
|
||||||
|
INVALIDATE METADATA ${stats_db_name};
|
||||||
|
|
@ -0,0 +1,44 @@
|
||||||
|
--------------------------------------------------------------
|
||||||
|
--------------------------------------------------------------
|
||||||
|
-- Publication table/view and Publication related tables/views
|
||||||
|
--------------------------------------------------------------
|
||||||
|
--------------------------------------------------------------
|
||||||
|
|
||||||
|
-- Publication temporary table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal ,
|
||||||
|
p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
|
||||||
|
p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
|
||||||
|
case when size(p.description) > 0 then true else false end as abstract,
|
||||||
|
'publication' as type
|
||||||
|
from ${openaire_db_name}.publication p
|
||||||
|
where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_datasources as
|
||||||
|
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
|
||||||
|
FROM (
|
||||||
|
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
|
||||||
|
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
|
||||||
|
where p.datainfo.deletedbyinference=false ) p
|
||||||
|
LEFT OUTER JOIN (
|
||||||
|
SELECT substr(d.id, 4) id
|
||||||
|
from ${openaire_db_name}.datasource d
|
||||||
|
WHERE d.datainfo.deletedbyinference=false ) d on p.datasource = d.id;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language FROM ${openaire_db_name}.publication p where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
-- Publication_citations
|
||||||
|
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and p.datainfo.deletedbyinference=false;
|
||||||
|
|
@ -0,0 +1,36 @@
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Dataset table/view and Dataset related tables/views
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
|
||||||
|
-- Dataset temporary table supporting updates
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal,
|
||||||
|
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
|
||||||
|
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
|
||||||
|
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
|
||||||
|
'dataset' AS type
|
||||||
|
FROM ${openaire_db_name}.dataset d
|
||||||
|
WHERE d.datainfo.deletedbyinference=FALSE;
|
||||||
|
|
||||||
|
-- Dataset_citations
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and d.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||||
|
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||||
|
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||||
|
|
@ -0,0 +1,36 @@
|
||||||
|
--------------------------------------------------------
|
||||||
|
--------------------------------------------------------
|
||||||
|
-- Software table/view and Software related tables/views
|
||||||
|
--------------------------------------------------------
|
||||||
|
--------------------------------------------------------
|
||||||
|
|
||||||
|
-- Software temporary table supporting updates
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal,
|
||||||
|
s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
|
||||||
|
s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
|
||||||
|
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||||
|
'software' as type
|
||||||
|
from ${openaire_db_name}.software s
|
||||||
|
where s.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
-- Software_citations
|
||||||
|
CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and s.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||||
|
FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||||
|
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||||
|
|
@ -0,0 +1,36 @@
|
||||||
|
--------------------------------------------------------------------------------
|
||||||
|
--------------------------------------------------------------------------------
|
||||||
|
-- Otherresearchproduct table/view and Otherresearchproduct related tables/views
|
||||||
|
--------------------------------------------------------------------------------
|
||||||
|
--------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
-- Otherresearchproduct temporary table supporting updates
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal,
|
||||||
|
o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
|
||||||
|
o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
|
||||||
|
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||||
|
'other' AS type
|
||||||
|
FROM ${openaire_db_name}.otherresearchproduct o
|
||||||
|
WHERE o.datainfo.deletedbyinference=FALSE;
|
||||||
|
|
||||||
|
-- Otherresearchproduct_citations
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and o.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||||
|
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||||
|
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||||
|
|
@ -0,0 +1,30 @@
|
||||||
|
-- noinspection SqlNoDataSourceInspectionForFile
|
||||||
|
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Project table/view and Project related tables/views
|
||||||
|
------------------------------------------------------
|
||||||
|
------------------------------------------------------
|
||||||
|
-- Project_oids Table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
|
||||||
|
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
|
||||||
|
|
||||||
|
-- Project_organizations Table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
|
||||||
|
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';
|
||||||
|
|
||||||
|
-- Project_results Table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.project_results;
|
||||||
|
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject' and r.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
-- Project table
|
||||||
|
----------------
|
||||||
|
-- Creating and populating temporary Project table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year INT, end_year INT, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, year(p.startdate.value) AS start_year, year(p.enddate.value) AS end_year, CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
create table ${stats_db_name}.funder as
|
||||||
|
select distinct xpath_string(fund, '//funder/id') as id, xpath_string(fund, '//funder/name') as name, xpath_string(fund, '//funder/shortname') as shortname
|
||||||
|
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund
|
||||||
|
|
@ -0,0 +1,31 @@
|
||||||
|
----------------------------------------------------
|
||||||
|
----------------------------------------------------
|
||||||
|
-- Result table/view and Result related tables/views
|
||||||
|
----------------------------------------------------
|
||||||
|
----------------------------------------------------
|
||||||
|
|
||||||
|
-- Views on temporary tables that should be re-created in the end
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||||
|
|
||||||
|
-- Views on final tables
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
|
||||||
|
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization';
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
|
||||||
|
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;
|
||||||
|
|
@ -0,0 +1,58 @@
|
||||||
|
-- noinspection SqlNoDataSourceInspectionForFile
|
||||||
|
|
||||||
|
------------------------------------------------------------
|
||||||
|
------------------------------------------------------------
|
||||||
|
-- Datasource table/view and Datasource related tables/views
|
||||||
|
------------------------------------------------------------
|
||||||
|
------------------------------------------------------------
|
||||||
|
|
||||||
|
-- Datasource table creation & update
|
||||||
|
-------------------------------------
|
||||||
|
-- Creating and populating temporary datasource table
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
|
||||||
|
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||||
|
|
||||||
|
-- Insert statement that takes into account the piwik_id of the openAIRE graph
|
||||||
|
INSERT INTO ${stats_db_name}.datasource_tmp
|
||||||
|
SELECT substr(d1.id, 4) AS id, officialname.value AS name,
|
||||||
|
datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d1.dateofvalidation.value,'yyyy') AS yearofvalidation,
|
||||||
|
FALSE AS harvested,
|
||||||
|
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
|
||||||
|
d1.latitude.value AS latitude, d1.longitude.value AS longitude,
|
||||||
|
d1.websiteurl.value AS websiteurl, d1.openairecompatibility.classid AS compatibility
|
||||||
|
FROM ${openaire_db_name}.datasource d1
|
||||||
|
LEFT OUTER JOIN
|
||||||
|
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
|
||||||
|
FROM ${openaire_db_name}.datasource
|
||||||
|
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
|
||||||
|
WHERE originalidd like "piwik:%") AS d2
|
||||||
|
ON d1.id = d2.id
|
||||||
|
WHERE d1.datainfo.deletedbyinference=FALSE;
|
||||||
|
|
||||||
|
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
|
||||||
|
-- Creating a temporary dual table that will be removed after the following insert
|
||||||
|
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
|
||||||
|
INSERT INTO ${stats_db_name}.dual VALUES('X');
|
||||||
|
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
|
||||||
|
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
|
||||||
|
DROP TABLE ${stats_db_name}.dual;
|
||||||
|
|
||||||
|
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
|
||||||
|
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
|
||||||
|
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
|
||||||
|
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
|
||||||
|
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization';
|
||||||
|
|
||||||
|
-- datasource sources:
|
||||||
|
-- where the datasource info have been collected from.
|
||||||
|
create table if not exists ${stats_db_name}.datasource_sources AS select substr(d.id,4) as id, substr(cf.key, 4) as datasource from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf where d.datainfo.deletedbyinference=false;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -0,0 +1,12 @@
|
||||||
|
----------------------------------------------------------------
|
||||||
|
----------------------------------------------------------------
|
||||||
|
-- Organization table/view and Organization related tables/views
|
||||||
|
----------------------------------------------------------------
|
||||||
|
----------------------------------------------------------------
|
||||||
|
DROP TABLE IF EXISTS ${stats_db_name}.organization;
|
||||||
|
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
|
||||||
|
FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
|
||||||
|
|
@ -0,0 +1,302 @@
|
||||||
|
<workflow-app name="Graph Stats" xmlns="uri:oozie:workflow:0.5">
|
||||||
|
<parameters>
|
||||||
|
<property>
|
||||||
|
<name>stats_db_name</name>
|
||||||
|
<description>the target stats database name</description>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>stats_db_shadow_name</name>
|
||||||
|
<description>the name of the shadow schema</description>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>stats_db_production_name</name>
|
||||||
|
<description>the name of the production schema</description>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>hive_metastore_uris</name>
|
||||||
|
<description>hive server metastore URIs</description>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>hive_jdbc_url</name>
|
||||||
|
<description>hive server jdbc url</description>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>hive_timeout</name>
|
||||||
|
<description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
|
||||||
|
</property>
|
||||||
|
</parameters>
|
||||||
|
|
||||||
|
<global>
|
||||||
|
<job-tracker>${jobTracker}</job-tracker>
|
||||||
|
<name-node>${nameNode}</name-node>
|
||||||
|
<configuration>
|
||||||
|
<property>
|
||||||
|
<name>hive.metastore.uris</name>
|
||||||
|
<value>${hive_metastore_uris}</value>
|
||||||
|
</property>
|
||||||
|
<property>
|
||||||
|
<name>hive.txn.timeout</name>
|
||||||
|
<value>${hive_timeout}</value>
|
||||||
|
</property>
|
||||||
|
</configuration>
|
||||||
|
</global>
|
||||||
|
|
||||||
|
<start to="Step1"/>
|
||||||
|
|
||||||
|
<kill name="Kill">
|
||||||
|
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||||
|
</kill>
|
||||||
|
|
||||||
|
<action name="Step1">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step1.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step2"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step2">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step2.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step3"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step3">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step3.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step4"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step4">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step4.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step5"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step5">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step5.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step6"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step6">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step6.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step7"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step7">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step7.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step8"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step8">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step8.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step9"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step9">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step9.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step10"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step10">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step10.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
<param>external_stats_db_name=${external_stats_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step11"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step11">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step11.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
<param>external_stats_db_name=${external_stats_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step12"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step12">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step12.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step13"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step13">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step13.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step14"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step14">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step14.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step15"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step15">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step15.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step16"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step16">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step16.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step16_5"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step16_5">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step16_5.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step16_6"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step16_6">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step16_6.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>openaire_db_name=${openaire_db_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step17"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step17">
|
||||||
|
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||||
|
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||||
|
<script>scripts/step17.sql</script>
|
||||||
|
<param>stats_db_name=${stats_db_name}</param>
|
||||||
|
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
|
||||||
|
</hive2>
|
||||||
|
<ok to="Step18"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step18">
|
||||||
|
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||||
|
<job-tracker>${jobTracker}</job-tracker>
|
||||||
|
<name-node>${nameNode}</name-node>
|
||||||
|
<exec>impala-shell.sh</exec>
|
||||||
|
<argument>${stats_db_name}</argument>
|
||||||
|
<argument>step18.sql</argument>
|
||||||
|
<argument>${wf:appPath()}/scripts/step18.sql</argument>
|
||||||
|
<file>impala-shell.sh</file>
|
||||||
|
</shell>
|
||||||
|
<ok to="Step19"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step19">
|
||||||
|
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||||
|
<job-tracker>${jobTracker}</job-tracker>
|
||||||
|
<name-node>${nameNode}</name-node>
|
||||||
|
<exec>impala-shell.sh</exec>
|
||||||
|
<argument>${stats_db_shadow_name}</argument>
|
||||||
|
<argument>step19.sql</argument>
|
||||||
|
<argument>${wf:appPath()}/scripts/step19.sql</argument>
|
||||||
|
<file>impala-shell.sh</file>
|
||||||
|
</shell>
|
||||||
|
<ok to="Step20"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<action name="Step20">
|
||||||
|
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||||
|
<job-tracker>${jobTracker}</job-tracker>
|
||||||
|
<name-node>${nameNode}</name-node>
|
||||||
|
<exec>updateCache.sh</exec>
|
||||||
|
<argument>${stats_tool_api_url}</argument>
|
||||||
|
<file>updateCache.sh</file>
|
||||||
|
</shell>
|
||||||
|
<ok to="End"/>
|
||||||
|
<error to="Kill"/>
|
||||||
|
</action>
|
||||||
|
|
||||||
|
<end name="End"/>
|
||||||
|
</workflow-app>
|
||||||
Loading…
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